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jalview.git
2023-01-20 Jim ProcterJAL-4114 alphafold now marked as AB-INITIO so adjust... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 additional warnings when PDBe doesn’t return... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 patch REST client for changed JSON schema... commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 formatting commit | commitdiff | tree | snapshot
2023-01-20 Jim ProcterJAL-4114 updated mock tests and responses for v2.0 api commit | commitdiff | tree | snapshot
2022-11-29 Ben SoaresJAL-4101 Updated Rfam* tests commit | commitdiff | tree | snapshot
2022-11-29 Ben SoaresJAL-4101 Updated DEFAULT_RFAM_BASEURL commit | commitdiff | tree | snapshot
2022-10-26 Ben SoaresJAL-3416 (and others) increasing number of STDERR lines... commit | commitdiff | tree | snapshot
2022-10-25 Ben SoaresJAL-3416 Making FlatLaF default for macs due to a probl... commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4065 final fix for 2.11.2.5 - 5pm BST release commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4065 revised to avoid a visit from the apostrophe... commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4073 update tests commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4073 fix PEBCAK failure commit | commitdiff | tree | snapshot
2022-10-11 Ben SoaresJAL-4014 Changed gecos display names to match labels... commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4065 revised whatsNew to make sense ! commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4065 release 2.11.2.5 date is 11th Oct commit | commitdiff | tree | snapshot
2022-10-07 Jim ProcterJAL-4065 update citations for Pfam and Rfam and added... commit | commitdiff | tree | snapshot
2022-10-07 Jim ProcterJAL-4065 2.11.2.5 release version bump commit | commitdiff | tree | snapshot
2022-10-07 Jim ProcterJAL-4065 release notes and updated release date for... commit | commitdiff | tree | snapshot
2022-10-06 Jim Procterstable url for PFAM retrieval via interpro api :) JAL... commit | commitdiff | tree | snapshot
2022-10-06 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2022-10-06 Jim ProcterJAL-4065 release notes for JAL-4073 JAL-4074 commit | commitdiff | tree | snapshot
2022-10-06 Jim ProcterJAL-4073 Pfam retrieval now works via a template includ... commit | commitdiff | tree | snapshot
2022-10-06 Jim ProcterPatch for JAL-4074 - any content ending in ‘gzip’ recog... commit | commitdiff | tree | snapshot
2022-09-15 Jim ProcterJAL-4065 release notes for JAL-4014 and JAL-4063 in... commit | commitdiff | tree | snapshot
2022-09-15 Jim ProcterJAL-4065 - new release notes featuring JAL-3612 fix commit | commitdiff | tree | snapshot
2022-09-14 Jim ProcterMerge branch 'bug/JAL-3612_overviewFeatureOrdering... commit | commitdiff | tree | snapshot
2022-08-23 Ben SoaresJAL-4014 JAL-4063 Added gecos colourScheme names (INFO... commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterJAL-4046 release on 9th August 2022 commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterJAL-4046 JAL-3993 imports reformatting commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterJAL-4046 JAL-3993 patch for 2.11.2.4 release commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterJAL-4046 release notes for JAL-3991 commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterMerge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a... commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterJAL-4046 release notes for JAL-4014 - gecos colourschemes commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterMerge branch 'improvement/JAL-4014_gecos_colour_schemes... commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterJAL-4056 documented in release notes for JAL-4043 commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterMerge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoin... commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterJAL-4043 what’s new, updated help images and release... commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterJAL-4034 show the loading spinner when switching betwee... commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterMerge branch 'features/JAL-4034_improve_3dbeacons_butto... commit | commitdiff | tree | snapshot
2022-08-01 Ben SoaresJAL-4056 fixed tl;dr section of doc/building.md commit | commitdiff | tree | snapshot
2022-07-26 Ben SoaresJAL-4036 Fixed the virus_host_id query field commit | commitdiff | tree | snapshot
2022-07-26 Ben SoaresJAL-4036 Added text to help about different number... commit | commitdiff | tree | snapshot
2022-07-25 Ben SoaresJAL-4036 updated help about new UniProt API commit | commitdiff | tree | snapshot
2022-07-25 Ben SoaresJAL-4036 moved a comment block commit | commitdiff | tree | snapshot
2022-07-25 Ben SoaresJAL-4034 button looks better also on other OSes with... commit | commitdiff | tree | snapshot
2022-07-24 Ben SoaresJAL-4034 add round corners to 3DB confirmation button... commit | commitdiff | tree | snapshot
2022-07-22 Ben SoaresJAL-4036 Changes made from code review CR-JAL-265 commit | commitdiff | tree | snapshot
2022-07-22 Ben SoaresJAL-4036 Add getDbName to the GFTSPanelI and add an... commit | commitdiff | tree | snapshot
2022-07-22 Ben SoaresJAL-4036 removing the query field code from the dropdow... commit | commitdiff | tree | snapshot
2022-07-21 Ben SoaresJAL-4036 Don't autosearch changing index when autosearc... commit | commitdiff | tree | snapshot
2022-07-21 Ben SoaresJAL-4036 add search fieldname to dropdown list commit | commitdiff | tree | snapshot
2022-07-21 Ben SoaresJAL-4036 removed often duplicated pluralisation in... commit | commitdiff | tree | snapshot
2022-07-21 Ben SoaresJAL-4036 New configuration, target and pagination proce... commit | commitdiff | tree | snapshot
2022-07-20 Jim ProcterJAL-4046 started release notes for 2.11.2.4 patch release commit | commitdiff | tree | snapshot
2022-07-20 Jim ProcterJAL-4045 - don't apply distribution dependent scale... commit | commitdiff | tree | snapshot
2022-07-15 Ben SoaresJAL-4034 Use the new non-modal JDialog for 3DBeacons... commit | commitdiff | tree | snapshot
2022-07-15 Ben SoaresJAL-4034 Allow request for non-modal JDialog, which... commit | commitdiff | tree | snapshot
2022-07-12 Ben SoaresJAL-4034 change to jalview property name commit | commitdiff | tree | snapshot
2022-07-12 Ben SoaresJAL-4034 showConfirmDialog works for both desktop and... commit | commitdiff | tree | snapshot
2022-07-11 Ben SoaresJAL-4034 Non-blocking 3D Beacons query after warning... commit | commitdiff | tree | snapshot
2022-07-11 Ben SoaresJAL-4034 allow a jalview_property to set the threshold... commit | commitdiff | tree | snapshot
2022-07-05 Jim ProcterJAL-4012 release date bump and JAL-4004 tweak to includ... commit | commitdiff | tree | snapshot
2022-07-04 Jim ProcterJAL-4034 fix #3 change uniprot ref fetch dialog to... commit | commitdiff | tree | snapshot
2022-07-04 Jim ProcterJAL-4034 Fix #2 show an icon and a button to press... commit | commitdiff | tree | snapshot
2022-07-04 Jim ProcterJAL-4034 fix 1 - reword button commit | commitdiff | tree | snapshot
2022-07-04 Jim ProcterJAL-4012 updated release date and whats new for 2.11.2.3 commit | commitdiff | tree | snapshot
2022-07-01 Jim ProcterJAL-4012 tweak release notes wording for legacy.uniprot commit | commitdiff | tree | snapshot
2022-07-01 Jim ProcterMerge branch 'patch/JAL-4036_uniprot_fts_legacy_endpoin... commit | commitdiff | tree | snapshot
2022-07-01 Jim ProcterJAL-4036 JAL-4012 note about Uniprot FTS workaround... commit | commitdiff | tree | snapshot
2022-06-30 Jim ProcterJAL-4036 use the legacy endpoint (and report the FTS... commit | commitdiff | tree | snapshot
2022-06-28 Ben SoaresMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... commit | commitdiff | tree | snapshot
2022-06-28 Ben SoaresJAL-1988 Don't put Quit in the File menu if there's... commit | commitdiff | tree | snapshot
2022-06-23 Ben SoaresMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... commit | commitdiff | tree | snapshot
2022-06-23 Ben SoaresJAL-1988 Check for setHandler capability to avoid About... commit | commitdiff | tree | snapshot
2022-06-17 Ben SoaresJAL-3027 Avoid FlatLAF Desktop class is JalviewJS commit | commitdiff | tree | snapshot
2022-06-15 Jim ProcterJAL-4012 release notes for JAL-1988,JAL-3416 commit | commitdiff | tree | snapshot
2022-06-15 Jim ProcterJAL-1988 JAL-3416 avoid unnecessary static flag commit | commitdiff | tree | snapshot
2022-06-15 Jim ProcterJAL-3418 JAL-1988 don’t need java version check anymore commit | commitdiff | tree | snapshot
2022-06-15 Jim ProcterMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... commit | commitdiff | tree | snapshot
2022-06-13 Ben SoaresJAL-1988 Hack to ensure Quit dialog box is moved to... commit | commitdiff | tree | snapshot
2022-06-13 Ben SoaresJAL-1988 Moved APQHandlers to jalview.jbgui and called... commit | commitdiff | tree | snapshot
2022-06-13 Ben SoaresMerge branch 'develop' into improvement/JAL-1988+JAL... commit | commitdiff | tree | snapshot
2022-06-13 Ben SoaresJAL-4004 Fix missing whatsNew.html when not building... commit | commitdiff | tree | snapshot
2022-06-13 Jim ProcterMerge branch 'improvement/JAL-1988+JAL-3416_flatlaf_osx... commit | commitdiff | tree | snapshot
2022-06-13 Jim ProcterMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... commit | commitdiff | tree | snapshot
2022-06-13 Ben SoaresJAL-3416 remove flat as default for linux commit | commitdiff | tree | snapshot
2022-06-13 Ben SoaresJAL-1988 JAL-3416 Using the flatlaf-extras About, Prefe... commit | commitdiff | tree | snapshot
2022-06-13 Ben SoaresJAL-3416 Added some mac specific FlatLAF settings.... commit | commitdiff | tree | snapshot
2022-06-13 Ben SoaresJAL-3416 updated FlatLAF libraries to 2.3. Added the... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4012 - JAL-4020 release notes and a bit of ‘trouble... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterMerge branch 'bug/JAL-4020_add_pymolwin_paths' into... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4004 add the autogenerated whatsNew.html and releas... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4014 release notes for JAL-4026 patches commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4026 increase timeouts for command line ops commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4026 ignore StructureSelectionManager events if... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4026 always wait 50ms before checking if the calcul... commit | commitdiff | tree | snapshot
2022-06-09 Jim ProcterJAL-4026 update the viewport’s wrapped width after... commit | commitdiff | tree | snapshot
2022-06-08 Jim ProcterJAL-4014 release notes for JAL-4023 and JAL-4024 commit | commitdiff | tree | snapshot
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