source.jalview.org Git - vamsas.git/shortlog

git://source.jalview.org / vamsas.git / shortlog

2006-01-13	jprocter	added getOriginalRoots() method for current archive.	commit \| commitdiff \| tree \| snapshot
2006-01-13	jprocter	synchronizing commit	commit \| commitdiff \| tree \| snapshot
2006-01-13	jprocter	refactored standard static 'ArchiveReports' into their...	commit \| commitdiff \| tree \| snapshot
2006-01-13	jprocter	extracted serial command processing for use by other...	commit \| commitdiff \| tree \| snapshot
2006-01-13	jprocter	synchronized AppData parsing stuff with new AppData...	commit \| commitdiff \| tree \| snapshot
2006-01-13	jprocter	added a couple of TODO: entries.	commit \| commitdiff \| tree \| snapshot
2006-01-13	jprocter	partially implemented ArchiveWriter test class (routine...	commit \| commitdiff \| tree \| snapshot
2005-11-30	jprocter	added OriginalArchiveReader access method and helper...	commit \| commitdiff \| tree \| snapshot
2005-11-30	jprocter	wrapper class to prevent client from closing JarOutputS...	commit \| commitdiff \| tree \| snapshot
2005-11-30	jprocter	Switched xs:base64encoded and xs:String for type of...	commit \| commitdiff \| tree \| snapshot
2005-11-29	jprocter	probably deprecating this class.	commit \| commitdiff \| tree \| snapshot
2005-11-29	jprocter	small updates.	commit \| commitdiff \| tree \| snapshot
2005-11-29	jprocter	untested vamsasArchive class with additional method...	commit \| commitdiff \| tree \| snapshot
2005-11-23	jprocter	basic logging configs.	commit \| commitdiff \| tree \| snapshot
2005-11-23	jprocter	using commons-logging for hierarchial control of logger.	commit \| commitdiff \| tree \| snapshot
2005-11-23	jprocter	use SessionFile constructor and added todo about java...	commit \| commitdiff \| tree \| snapshot
2005-11-21	jprocter	reorganising vamsasArchive (write to temp file, rather...	commit \| commitdiff \| tree \| snapshot
2005-11-11	jprocter	lost from new schema	commit \| commitdiff \| tree \| snapshot
2005-11-11	jprocter	basics of arhiveWriter	commit \| commitdiff \| tree \| snapshot
2005-11-11	jprocter	access for vamsas.xml style vamsas archive	commit \| commitdiff \| tree \| snapshot
2005-11-11	jprocter	extended report of archive contents.	commit \| commitdiff \| tree \| snapshot
2005-11-10	jprocter	synchronized with last schema revision.	commit \| commitdiff \| tree \| snapshot
2005-11-10	jprocter	synchronized with last schema revision.	commit \| commitdiff \| tree \| snapshot
2005-11-03	jprocter	Vamsas Archive Reader and simple test class.	commit \| commitdiff \| tree \| snapshot
2005-11-03	amwaterhouse	Application data has choice of data or dataRef	commit \| commitdiff \| tree \| snapshot
2005-11-02	jprocter	refactored common locked IO methods from ClientsFile...	commit \| commitdiff \| tree \| snapshot
2005-11-02	jprocter	doc comment about lock holding across session client...	commit \| commitdiff \| tree \| snapshot
2005-11-02	jprocter	propagate changes from schema update.	commit \| commitdiff \| tree \| snapshot
2005-11-01	jprocter	creates and holds all the watcher/io objects for a...	commit \| commitdiff \| tree \| snapshot
2005-11-01	jprocter	partially updated comments (and repurposing of class).	commit \| commitdiff \| tree \| snapshot
2005-10-28	jprocter	refactored documentHandler to VamsasFile to indicate...	commit \| commitdiff \| tree \| snapshot
2005-10-28	amwaterhouse	DatasetAnnotations begin and end set as integers	commit \| commitdiff \| tree \| snapshot
2005-10-27	jprocter	javadoc typo	commit \| commitdiff \| tree \| snapshot
2005-10-25	jprocter	added more extantLock methods and test for clientList...	commit \| commitdiff \| tree \| snapshot
2005-10-24	jprocter	typo fix.	commit \| commitdiff \| tree \| snapshot
2005-10-24	jprocter	new fileWatcher method passes lock for changed file...	commit \| commitdiff \| tree \| snapshot
2005-10-24	jprocter	added automatic channel closure for failed locks. ...	commit \| commitdiff \| tree \| snapshot
2005-10-24	jprocter	forgot to release a trial lock that failed.	commit \| commitdiff \| tree \| snapshot
2005-10-22	jprocter	debugged fileWatcher logic and Lock release function.	commit \| commitdiff \| tree \| snapshot
2005-10-20	jprocter	better time delay in command execution.	commit \| commitdiff \| tree \| snapshot
2005-10-20	jprocter	fixed change test.	commit \| commitdiff \| tree \| snapshot
2005-10-20	jprocter	better builder	commit \| commitdiff \| tree \| snapshot
2005-10-20	jprocter	added better check for file change (length + last modified)	commit \| commitdiff \| tree \| snapshot
2005-10-20	jprocter	slackened lock_release success requirement.	commit \| commitdiff \| tree \| snapshot
2005-10-14	amwaterhouse	Dataset should not contain gaps	commit \| commitdiff \| tree \| snapshot
2005-10-12	jprocter	franks data and topali analysis	commit \| commitdiff \| tree \| snapshot
2005-10-12	jprocter	updated core objects from latest schema (dbRef)	commit \| commitdiff \| tree \| snapshot
2005-10-12	amwaterhouse	Dbref attributes are of type string	commit \| commitdiff \| tree \| snapshot
2005-10-12	jprocter	modified FileWatcher to only register file change after...	commit \| commitdiff \| tree \| snapshot
2005-10-11	jprocter	ClientsFileTest debugged and verified.	commit \| commitdiff \| tree \| snapshot
2005-10-11	jprocter	added test config for eclipse	commit \| commitdiff \| tree \| snapshot
2005-10-11	jprocter	test clientsFile handlers.	commit \| commitdiff \| tree \| snapshot
2005-10-11	jprocter	quick update	commit \| commitdiff \| tree \| snapshot
2005-10-11	jprocter	quick update	commit \| commitdiff \| tree \| snapshot
2005-10-08	jprocter	accidental deletion of vamsas Client build config ...	commit \| commitdiff \| tree \| snapshot
2005-10-07	jprocter	random bits and pieces whilst in hamburg - beginnings...	commit \| commitdiff \| tree \| snapshot
2005-10-06	amwaterhouse	Provenance must contain 1 entry, Alignment may have...	commit \| commitdiff \| tree \| snapshot
2005-09-25	jprocter	implemented state flags and automatic call to VorbaIdFa...	commit \| commitdiff \| tree \| snapshot
2005-09-23	jprocter	refactored schema (SequenceSet to DataSet and SequenceS...	commit \| commitdiff \| tree \| snapshot
2005-09-23	jprocter	added a pollUpdate method to kick the vamsas Document...	commit \| commitdiff \| tree \| snapshot
2005-09-22	jprocter	event handler.	commit \| commitdiff \| tree \| snapshot
2005-09-22	jprocter	refactored Client to simpleClient. Implemented many...	commit \| commitdiff \| tree \| snapshot
2005-09-22	jprocter	part implementation of simpleClient and refactoring...	commit \| commitdiff \| tree \| snapshot
2005-09-22	jprocter	added sourcegen entry for the vamsasDocument.xsd objects.	commit \| commitdiff \| tree \| snapshot
2005-09-22	jprocter	created new schema to define the document XML file...	commit \| commitdiff \| tree \| snapshot
2005-09-20	jprocter	made vamsas a proper root element in schema and added...	commit \| commitdiff \| tree \| snapshot
2005-09-20	amwaterhouse	Optional instead of min/max	commit \| commitdiff \| tree \| snapshot
2005-09-20	jprocter	builder for eclipse	commit \| commitdiff \| tree \| snapshot
2005-09-20	jprocter	changed vamsas.xsd filename.	commit \| commitdiff \| tree \| snapshot
2005-09-20	jprocter	transient file.	commit \| commitdiff \| tree \| snapshot
2005-09-20	jprocter	refactored to vamsas.xsd	commit \| commitdiff \| tree \| snapshot
2005-09-20	jprocter	renamed.	commit \| commitdiff \| tree \| snapshot
2005-09-20	jprocter	latest schema.	commit \| commitdiff \| tree \| snapshot
2005-09-20	jprocter	objects from refactored schema.	commit \| commitdiff \| tree \| snapshot
2005-09-20	jprocter	move to new eclipse version.	commit \| commitdiff \| tree \| snapshot
2005-09-20	jprocter	updated builders	commit \| commitdiff \| tree \| snapshot
2005-09-20	jprocter	more comments.	commit \| commitdiff \| tree \| snapshot
2005-09-20	jprocter	refactored tree type to avoid conflicts.	commit \| commitdiff \| tree \| snapshot
2005-09-20	jprocter	added source generator and builder	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	updated to castor-0.9.9M2 and added some comments	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	tried to resolve some namespace clashes and add xs...	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	updated to castor-0.9.9M2	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	making more relocatable.	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	regenerate core objects	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	renamed getId to avoid clashes.	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	changed sourcegenerator destination package	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	refactored core objects and regenerated.	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	needed for castor sourcegenerator.	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	added castor sourcegenerator task.	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	default generation using sourcegen schema.	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	directory for runtime dependencies and non-java class...	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	ant based sourcegen task	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	log4j	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	first attempt at object build.	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	latestish vamsas schema	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	added a few more dependencies	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	added comments concerning provenance	commit \| commitdiff \| tree \| snapshot
2005-09-19	jprocter	added for generation of vamsas classes	commit \| commitdiff \| tree \| snapshot
2005-09-16	jprocter	basic example application skeleton and SimpleClientFact...	commit \| commitdiff \| tree \| snapshot
2005-09-16	jprocter	LGPL from FSF site.	commit \| commitdiff \| tree \| snapshot
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