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jalview.git
2020-02-04 gmungocJAL-2422 remove temporary debug code commit | commitdiff | tree | snapshot
2020-02-04 gmungocJAL-2422 fixed stopProgressBar (broken in pull up refac... commit | commitdiff | tree | snapshot
2020-02-04 gmungocJAL-2422 pull up refactoring in preparation for Chimera... commit | commitdiff | tree | snapshot
2020-01-31 gmungocJAL-2422 temporary hacks removed; use hex colours for... commit | commitdiff | tree | snapshot
2020-01-31 gmungocJAL-2422 more responsive Chimera/X path prompts in... commit | commitdiff | tree | snapshot
2020-01-30 gmungocJAL-2422 save/restore ChimeraX session commit | commitdiff | tree | snapshot
2020-01-28 gmungocJAL-2422 ChimeraX added to Preferences commit | commitdiff | tree | snapshot
2020-01-14 gmungocJAL-2422 proof of concept adaptations for ChimeraX... commit | commitdiff | tree | snapshot
2019-12-13 gmungocJAL-2422 'label' command to highlight ChimeraX residue... commit | commitdiff | tree | snapshot
2019-12-13 gmungocJAL-2422 write Jalview features to ChimeraX via command... commit | commitdiff | tree | snapshot
2019-12-13 gmungocJAL-2422 basic proof of concept of ChimeraX opened... commit | commitdiff | tree | snapshot
2019-10-15 Jim ProcterJAL-3407 update release date for Jalview 2.11.1 commit | commitdiff | tree | snapshot
2019-10-11 Jim ProcterMerge branch 'develop' into documentation/JAL-3407_2... commit | commitdiff | tree | snapshot
2019-09-26 gmungocJAL-2481 remove code duplication left by merge commit | commitdiff | tree | snapshot
2019-09-26 gmungocJAL-3441 action double-click in Feature Type column... commit | commitdiff | tree | snapshot
2019-08-23 gmungocJAL-3141 correct cast of spinner value commit | commitdiff | tree | snapshot
2019-08-22 gmungocJAL-3187 case-insensitive codon variant calculation commit | commitdiff | tree | snapshot
2019-08-21 gmungocJAL-3187 minor code tidying, todo removal commit | commitdiff | tree | snapshot
2019-08-12 Jim ProcterJAL-2987 release notes commit | commitdiff | tree | snapshot
2019-08-12 Jim ProcterJAL-3407 update RELEASE and cut new release notes in... commit | commitdiff | tree | snapshot
2019-08-12 Jim ProcterJAL-3407 JAL-3406 update credits in Jalview 2.11.1 commit | commitdiff | tree | snapshot
2019-08-09 gmungocJAL-3187 removal of variant feature (non-virtual) trans... commit | commitdiff | tree | snapshot
2019-08-07 gmungocJAL-3187 (fudge) look in both alignments for stored... feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-08-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-07-31 gmungocJAL-3389 add .py to restored Chimera session filename... commit | commitdiff | tree | snapshot
2019-07-31 gmungocMerge branch 'bug/JAL-3388structureChooserSorting'... commit | commitdiff | tree | snapshot
2019-07-30 gmungocJAL-3198 more efficient Sequence.getDisplayId() commit | commitdiff | tree | snapshot
2019-07-30 gmungocJAL-3388 correct class for column 0 Ref Sequence bug/JAL-3388structureChooserSorting commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3386 correct wrapped width calculation for headless... commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 more reused of SeqCanvas.computeWrappedGeometry commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 add seq-annotations gap to cheight not to... commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 Javadoc added for getWrappedHeight() commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 corrected wrapped widths height for IdCanvas commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 include seq-annotation spacing in getWrappedHe... commit | commitdiff | tree | snapshot
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into commit | commitdiff | tree | snapshot
2019-07-26 gmungocJAL-1793 only decode specific special characters in... commit | commitdiff | tree | snapshot
2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation commit | commitdiff | tree | snapshot
2019-07-26 gmungocJAL-3375 format validate VCF Integer and Float fields commit | commitdiff | tree | snapshot
2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data commit | commitdiff | tree | snapshot
2019-07-16 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-07-16 gmungocJAL-2987 tolerate null double values when formatting... commit | commitdiff | tree | snapshot
2019-07-10 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-07-10 Jim ProcterJAL-3289 bamboo properties for ‘BUILD’ getdown channel... commit | commitdiff | tree | snapshot
2019-07-10 Jim ProcterJAL-3289 bamboo properties for ‘BUILD’ getdown channel commit | commitdiff | tree | snapshot
2019-07-08 gmungocJAL-3187 derived peptide variants tweaks and tests commit | commitdiff | tree | snapshot
2019-07-05 gmungocJAL-3187 initial refactoring towards peptide variant... commit | commitdiff | tree | snapshot
2019-07-05 Ben SoaresJAL-1544 fixed a html encoding of '<' (%lt; -> &lt... commit | commitdiff | tree | snapshot
2019-07-05 gmungocJAL-1793 apply URL decoding when saving VCF attribute... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3111 correct JVL appbase for 2.10.5 via getdown commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterMerge branch 'task/JAL-3337-rm-lib-update-sourceDist... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3337 round-and-round the process source files again commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3337 more includes and excludes commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3337 remove the old lib directory ! task/JAL-3337-rm-lib-update-sourceDist commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3337 rejig the source distribution generation to... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3111 replace year in header for help pages and... commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresJAL-3225 try/catch for non-deprecated/deprecated proper... commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresJAL-3353 Change to build.gradle to use the file://... commit | commitdiff | tree | snapshot
2019-07-04 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2019-07-04 gmungocJAL-3111 help pages minor corrections commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresJAL-3348 fixed an internal href in help to allow building commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresJAL-3337 adjusted building doc as sourceDist uses gradl... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterMerge branch 'task/JAL-3348_document_cli_memory_setting... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3111 JAL-3348 JVL file documentation commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3348 revised bsoares memory settings documentation... commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresMerge branch 'develop' into task/JAL-3348_document_cli_... commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 memory.html documentation finished for 2.11.0 commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 jvmmempc in jvl file now works in linux commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 jvmmempc multiple values shouldn't be merged commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterJAL-3111 tidy up lists/indentation for release notes commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterJAL-3111 Java 11 only and 'onwards' commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterJAL-3111 more whatsNew tweaks commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterMerge branch 'task/JAL-3337_gradle_tasks_sourceDist_and... commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterJAL-3111 more whats new commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 start of new memory setting text commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 jvmmempc allowed in jvl file commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresMerge branch 'develop' into task/JAL-3348_document_cli_... commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterMerge branch 'documentation/JAL-2843_featureFiltersForm... commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 prepping getdown to pass JVM command line... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 updated what’s new… still more to come ! commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 updated privacy statement to remove mention... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 JAL-3150 revised Jalview archive documentation... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 JAL-3348 removed pre 2.11 instructions on... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 JAL-3280 hide the version check preference... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 tidied up preferences dialog documentation commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 fix broken helpTOC link commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterMerge branch 'tasks/JAL-3311_removeVamsasMenu' into... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterMerge branch 'develop' into tasks/JAL-3311_removeVamsasMenu commit | commitdiff | tree | snapshot
2019-07-02 Ben SoaresMerge branch 'develop' into task/JAL-3337_gradle_tasks_... commit | commitdiff | tree | snapshot
2019-07-02 Ben SoaresJAL-3337 Tidied up j8libs in THIRDPARTYLIBS. Replaced... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 release date now 4th July 2019 - codename... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterMerge branch 'documentation/JAL-3111_release_211' into... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 formatting commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 new known defect from JAL-797 commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 release notes for JAL-2789 JAL-2744 JAL-1889... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 whats new and JAL-2738 JAL-2743 expanded help... commit | commitdiff | tree | snapshot
2019-07-02 Ben SoaresMerge branch 'develop' into task/JAL-3337_gradle_tasks_... commit | commitdiff | tree | snapshot
2019-07-02 Ben SoaresJAL-3337 Excluding j11modDir from source distribution... commit | commitdiff | tree | snapshot
2019-07-02 Ben SoaresJAL-3337 Updated the j11lib jars (don't need to be... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3337 gradle.properties for publish help as html... commit | commitdiff | tree | snapshot
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