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jalview.git
2011-11-07 jprocter(JAL-974) - remove sun-internal class and use message... commit | commitdiff | tree | snapshot
2011-11-07 jprocterMerge branch 'JAL-976_jabaws2supp' into develop commit | commitdiff | tree | snapshot
2011-11-07 jprocter(JAL-976,JAL-975) disorder client menu items and check... commit | commitdiff | tree | snapshot
2011-11-07 jprocter(JAL-974,JAL-975) refactor common code for a JABAWS... commit | commitdiff | tree | snapshot
2011-11-07 jprocter(JAL-975) formatting commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-975) ensure AACons is only run on protein sequence... commit | commitdiff | tree | snapshot
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into develop commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-980) patch netbeans and installAnywhere builds commit | commitdiff | tree | snapshot
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into develop commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-980) use proper release number for Jmol libs ... commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-980,JAL-982) - applet console only allows console... commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-980) update binding for refactored Jmol constants... commit | commitdiff | tree | snapshot
2011-11-04 jprocter(JAL-980) update Jmol library to 12.2.16452 (built... commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-976) JABAWSv2 client for InstallAnywhere build commit | commitdiff | tree | snapshot
2011-11-03 jproctercleanup imports commit | commitdiff | tree | snapshot
2011-11-03 jprocterMerge branch 'JAL-976_jabaws2supp' into develop commit | commitdiff | tree | snapshot
2011-11-03 jprocterupdate build notes commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-975) client for amino acid conservation service... commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-974,JAL-975) new handler for JABAWS sequence and... commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-976) refactored common code for JABAWS v2 service... commit | commitdiff | tree | snapshot
2011-11-03 jproctertidy imports commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-978) discover JABA1 and JABA2 services and generat... commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-978) refactored JABAWS2 service handle class to... commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-976) upgrade to jabaws-2.0 min-client library commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-812,JAL-811) - generic test for 'calculation invol... commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-811) - workers hold references to generated annota... commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-812) javadoc and api method to relayout annotation... commit | commitdiff | tree | snapshot
2011-11-03 jprocter(JAL-811) new 'annotation type' field for marking annot... commit | commitdiff | tree | snapshot
2011-11-03 jprocterensure we have valid fontMetrics - (NPE was raised... commit | commitdiff | tree | snapshot
2011-10-28 jprocterMerge branch 'updaternasecstr_JAL-889' into develop commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-885) RNA helix and purine pyrimidine colouring... commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-885 - catch race condition when rna structure width... commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-969 - refactor initialisation of automatic annotati... commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-885 more efficient calculation and robust for misma... commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-885 JAL-580) ignore invalid RNA structure lines commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-902 structure conservation row for applet commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-970) interactive editing of RNA helix annotation... commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-966) efficiency commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-889) ensure annotation row is revalidated after... commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-885,JAL-580) structure consensus should only be... commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-889) ensure latest version of RNA pairlist is... commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-580 - display position where wuss parsing error... commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-580 ensure WUSS annotation string is up to date... commit | commitdiff | tree | snapshot
2011-10-28 jprocteruse stack rather than vector and throw parse exceptions commit | commitdiff | tree | snapshot
2011-10-28 jprocterJAL-580 ensure WUSS annotation is reparsed if necessary... commit | commitdiff | tree | snapshot
2011-10-28 jprocterNPE exception if annotation manually edited commit | commitdiff | tree | snapshot
2011-10-28 jprocterextend API commit | commitdiff | tree | snapshot
2011-10-28 jprocterrefactor to use model API commit | commitdiff | tree | snapshot
2011-10-28 jprocter(JAL-963) refactor RNA helix helper class to schemes commit | commitdiff | tree | snapshot
2011-10-27 jprocterMerge branch 'refactor_aligcalcs' into develop commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-969) efficiency commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-969) fix logic bug introduced during refactoring commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-969) removed TODOs commit | commitdiff | tree | snapshot
2011-10-27 jprocterrenamed menu entry to avoid field name clash commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-969) todo test re refactoring and possible change... commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to... commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-961) refactored consensus and rna structure consen... commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-961) use simplified notification logic to test... commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-961) methods for checking calculation status commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-961) more calculation annotation and result object... commit | commitdiff | tree | snapshot
2011-10-27 jprocter(JAL-967) ensure annotation panel is rendered with... commit | commitdiff | tree | snapshot
2011-10-21 jprocterRefactored alignment viewport to use common base, exten... commit | commitdiff | tree | snapshot
2011-10-21 jprocternew base class to hold core visualization settings... commit | commitdiff | tree | snapshot
2011-10-21 jproctertodo commit | commitdiff | tree | snapshot
2011-10-21 jprocterstatic convenience methods for constructing and calcula... commit | commitdiff | tree | snapshot
2011-10-21 jprocteruse List rather than Vector commit | commitdiff | tree | snapshot
2011-10-21 jprocterextend alignPanel api with OOMHandler call to raise... commit | commitdiff | tree | snapshot
2011-10-21 jprocterremove unnecessary import commit | commitdiff | tree | snapshot
2011-10-21 jprocterIntroduced new AlignCalcWorker/manager interface. commit | commitdiff | tree | snapshot
2011-10-21 jprocterMerge branch 'Release_2_7_Branch_hotfix_JAL-962' into... commit | commitdiff | tree | snapshot
2011-10-21 jprocterMerge branch 'Release_2_7_Branch_hotfix_JAL-962' into... commit | commitdiff | tree | snapshot
2011-10-21 jprocter(JAL-965) new api methods to allow features to be loade... commit | commitdiff | tree | snapshot
2011-10-21 jprocter(JAL-962) rejig parameter processing order so groups... commit | commitdiff | tree | snapshot
2011-10-21 jprocter(JAL-962) allow group visibility to be specified before... commit | commitdiff | tree | snapshot
2011-10-20 jprocter(JAL-963) jalviewLite RNA alignment example (reusing... commit | commitdiff | tree | snapshot
2011-10-18 jprocterMerge branch 'logo_feature_JAL-958' into develop commit | commitdiff | tree | snapshot
2011-10-18 jprocterbackout parts of the interface from another development... commit | commitdiff | tree | snapshot
2011-10-18 jprocterMerge branch 'logo_feature_JAL-958' into develop commit | commitdiff | tree | snapshot
2011-10-18 jprocter(Jalview 3) refactored Graphics2D annotation rendering... commit | commitdiff | tree | snapshot
2011-10-17 jprocterMerge branch 'logo_feature_JAL-958' into develop commit | commitdiff | tree | snapshot
2011-10-17 jprocter(ahem) new renderer package containing api and renderin... commit | commitdiff | tree | snapshot
2011-10-14 jprocterMerge branch 'logo_feature_JAL-958' into develop commit | commitdiff | tree | snapshot
2011-10-14 jprocter(JAL-958) documented normalised sequence logo parameter commit | commitdiff | tree | snapshot
2011-10-14 jprocter(JAL-958) - normalised sequence logo for applet commit | commitdiff | tree | snapshot
2011-10-11 jprocternormalised logo rendering (JAL-958) commit | commitdiff | tree | snapshot
2011-10-10 jprocter(JAL-957) change splash screen and about to HTML text... commit | commitdiff | tree | snapshot
2011-10-10 jprocterupdate author list in license for (JAL-826) commit | commitdiff | tree | snapshot
2011-10-07 jproctermerge Jan and Lauren's RNA GUI changes into develop... commit | commitdiff | tree | snapshot
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_... commit | commitdiff | tree | snapshot
2011-10-03 jprocterMerge branch 'Release_2_7_Branch' commit | commitdiff | tree | snapshot
2011-10-03 jprocterredact previous commit - fileassociation tag not allowe... commit | commitdiff | tree | snapshot
2011-10-03 jprocterremoved unnecessary parameters and changed alignment... commit | commitdiff | tree | snapshot
2011-10-03 jproctercompile swingreader component for java 1.5 (JAL-948) commit | commitdiff | tree | snapshot
2011-09-28 jprocterMerge branch 'Release_2_7_Branch' Release_2_7 commit | commitdiff | tree | snapshot
2011-09-28 jprocterjnlps with and without file associations for default... commit | commitdiff | tree | snapshot
2011-09-28 jprocterbroken link. rearranged opening pg commit | commitdiff | tree | snapshot
2011-09-27 jproctertypo commit | commitdiff | tree | snapshot
2011-09-27 jprocterswitch to git release building commit | commitdiff | tree | snapshot
2011-09-27 jprocterpatch name, reference and URL for Multi-Harmony : JAL-724 commit | commitdiff | tree | snapshot
2011-09-27 jprocterensure server errors return a URL and response document... commit | commitdiff | tree | snapshot
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