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jalview.git
2005-03-08
amwaterhouse
dont color gaps in sequence features
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2005-03-08
amwaterhouse
if resIndex > 19 return color.white
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2005-03-01
jprocter
Obsolete. Explanation within the conservation coloursch...
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2005-02-28
jprocter
added uniquify sequence id assertion.
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2005-02-28
jprocter
partial implementation of JNet server prediction.
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2005-02-28
jprocter
first stab at a JPredClient.
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2005-02-23
jprocter
basic jpred concise prediction reader.
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2005-02-23
jprocter
new resources location.
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2005-02-23
jprocter
rearranged project structure
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2005-02-23
jprocter
making Jemboss client more configurable.
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2005-02-23
jprocter
bug fix for unaligned sequence sets and clustal colours...
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2005-02-23
jprocter
rearranged project structure
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2005-02-23
jprocter
new ant build for Jalview.
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2005-02-22
amwaterhouse
add titles
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2005-02-22
amwaterhouse
add history for cut and paste
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2005-02-22
amwaterhouse
updated help files
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2005-02-21
amwaterhouse
images moved
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2005-02-21
amwaterhouse
note of user_defined_colours added
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2005-02-21
amwaterhouse
image moved
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2005-02-21
amwaterhouse
Sets USER_DEFINED_COLOUR as property
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2005-02-21
amwaterhouse
images in image folder
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2005-02-21
amwaterhouse
Updated help pages
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2005-02-18
amwaterhouse
treepanel is now internalframe, has a menu
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2005-02-18
amwaterhouse
show sequence features is false by default
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2005-02-18
amwaterhouse
tree is printable
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2005-02-18
amwaterhouse
treepanel is now internalframe
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2005-02-18
amwaterhouse
featuresAdded = false
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2005-02-16
amwaterhouse
wrap alignment id drawing bug fixed
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2005-02-16
amwaterhouse
Save as jpg added
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2005-02-15
amwaterhouse
Fix bug when creating treepanel
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2005-02-15
amwaterhouse
abovePIDThreshold added to viewport
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2005-02-15
amwaterhouse
no action if supplied colour isnull
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2005-02-15
amwaterhouse
catch any pid or conservation related bugs here
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2005-02-15
amwaterhouse
add applytoallgroups colouring option
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2005-02-11
amwaterhouse
must add all features even if start and end res are...
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2005-02-11
amwaterhouse
move sequences up and down
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2005-02-11
amwaterhouse
add VK_F key, up down
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2005-02-11
amwaterhouse
end of seq adjustments
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2005-02-11
amwaterhouse
dont add new seqs to group
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2005-02-11
amwaterhouse
watch out for end of seq in findposition
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2005-02-11
amwaterhouse
update start and end res when copying
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2005-02-11
amwaterhouse
add control a key to select all
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2005-02-11
amwaterhouse
bug fixed if featureEnd is beyond end of sequence
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2005-02-10
amwaterhouse
watch end of sequence when asking for (start, end)
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2005-02-10
amwaterhouse
dont add new sequences to null groups!
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2005-02-10
amwaterhouse
change of label text
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2005-02-10
amwaterhouse
cut and paste now in main menu
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2005-02-10
amwaterhouse
trimmed down
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2005-02-10
amwaterhouse
Key listener works!!
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2005-02-10
amwaterhouse
Cut and paste implemented
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2005-02-10
amwaterhouse
check that we're not off the end of a sequence
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2005-02-10
amwaterhouse
check that mouse is over sequence if unaligned
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2005-02-10
amwaterhouse
edit sequence name method
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2005-02-10
amwaterhouse
remove try catch loop
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2005-02-10
amwaterhouse
isAligned method added, check before making tree
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2005-02-10
amwaterhouse
isAligned method added
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2005-02-10
amwaterhouse
removed
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2005-02-09
amwaterhouse
Start the thread
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2005-02-09
amwaterhouse
Display tooltip updated
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2005-02-09
amwaterhouse
Correct number of ids is drawn
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2005-02-09
amwaterhouse
Fixed display bugs when feature is off the screen
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2005-02-09
amwaterhouse
Blasts asynchronously
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2005-02-08
amwaterhouse
Set property returns key
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2005-02-08
amwaterhouse
Looks for missing ids using BlastClient
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2005-02-08
amwaterhouse
new class
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2005-02-08
jprocter
formatting imports.
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2005-02-07
amwaterhouse
Properties bug fixed
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2005-02-07
amwaterhouse
New class
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2005-02-07
amwaterhouse
Use Cache.getProperty
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2005-02-07
amwaterhouse
Settooltip for sequence feature
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2005-02-07
amwaterhouse
load properties on startup
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2005-02-07
amwaterhouse
Properties added
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2005-02-07
amwaterhouse
Now displays sequence features
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2005-02-07
amwaterhouse
New class for fetching sequence features
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2005-02-04
amwaterhouse
SequenceFeature display added
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2005-02-02
amwaterhouse
Modified for wrapAlignement
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2005-02-02
amwaterhouse
Remove test image
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2005-02-02
amwaterhouse
Modified for wrappingAlignment
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2005-02-01
amwaterhouse
Apply to all groups method added
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2005-02-01
amwaterhouse
Update PID or conservationSlider if necessary
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2005-02-01
amwaterhouse
Bugs in column selection fixed
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2005-02-01
amwaterhouse
Conservation and PID colouring methods updated, also...
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2005-02-01
amwaterhouse
Conservation and PID colouring methods updated
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2005-02-01
amwaterhouse
Secondary panel is hidden for the moment
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2005-02-01
amwaterhouse
Enable wrap menu item
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2005-02-01
amwaterhouse
Ability to apply to all groups added
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2005-02-01
amwaterhouse
No need for drawableSequence
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2005-02-01
amwaterhouse
Clustal colours now work
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2005-01-28
amwaterhouse
New layout, works 1.4 and 1.5
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2005-01-27
amwaterhouse
correct border width
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2005-01-27
amwaterhouse
JavaHelp files added
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2005-01-27
amwaterhouse
ColourSchemeKey now in documentation
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2005-01-25
amwaterhouse
system.exit or destroy if applet or app
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2005-01-25
amwaterhouse
change order of menuitems
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2005-01-25
amwaterhouse
don't system.ext
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2005-01-25
amwaterhouse
now has key listener
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2005-01-25
amwaterhouse
clustalColour bug fixed, clear selection
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2005-01-25
amwaterhouse
extends Applet
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2005-01-24
amwaterhouse
Adds regex.jar to classpath
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2005-01-24
amwaterhouse
warning! this is obfuscated
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