jalview.git
2011-11-08 jprocterMerge branch 'JAL-976_jabaws2supp' into develop
2011-11-08 jprocterfix NPE when no annotation workers present ...
2011-11-07 jprocter(JAL-974) - remove sun-internal class and use message...
2011-11-07 jprocterMerge branch 'JAL-976_jabaws2supp' into develop
2011-11-07 jprocter(JAL-976,JAL-975) disorder client menu items and check...
2011-11-07 jprocter(JAL-974,JAL-975) refactor common code for a JABAWS...
2011-11-07 jprocter(JAL-975) formatting
2011-11-04 jprocter(JAL-975) ensure AACons is only run on protein sequence...
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into develop
2011-11-04 jprocter(JAL-980) patch netbeans and installAnywhere builds
2011-11-04 jprocterMerge branch 'JAL-980_jmol_patch' into develop
2011-11-04 jprocter(JAL-980) use proper release number for Jmol libs ...
2011-11-04 jprocter(JAL-980,JAL-982) - applet console only allows console...
2011-11-04 jprocter(JAL-980) update binding for refactored Jmol constants...
2011-11-04 jprocter(JAL-980) update Jmol library to 12.2.16452 (built...
2011-11-03 jprocter(JAL-976) JABAWSv2 client for InstallAnywhere build
2011-11-03 jproctercleanup imports
2011-11-03 jprocterMerge branch 'JAL-976_jabaws2supp' into develop
2011-11-03 jprocterupdate build notes
2011-11-03 jprocter(JAL-975) client for amino acid conservation service...
2011-11-03 jprocter(JAL-974,JAL-975) new handler for JABAWS sequence and...
2011-11-03 jprocter(JAL-976) refactored common code for JABAWS v2 service...
2011-11-03 jproctertidy imports
2011-11-03 jprocter(JAL-978) discover JABA1 and JABA2 services and generat...
2011-11-03 jprocter(JAL-978) refactored JABAWS2 service handle class to...
2011-11-03 jprocter(JAL-976) upgrade to jabaws-2.0 min-client library
2011-11-03 jprocter(JAL-812,JAL-811) - generic test for 'calculation invol...
2011-11-03 jprocter(JAL-811) - workers hold references to generated annota...
2011-11-03 jprocter(JAL-812) javadoc and api method to relayout annotation...
2011-11-03 jprocter(JAL-811) new 'annotation type' field for marking annot...
2011-11-03 jprocterensure we have valid fontMetrics - (NPE was raised...
2011-10-28 jprocterMerge branch 'updaternasecstr_JAL-889' into develop
2011-10-28 jprocter(JAL-885) RNA helix and purine pyrimidine colouring...
2011-10-28 jprocterJAL-885 - catch race condition when rna structure width...
2011-10-28 jprocterJAL-969 - refactor initialisation of automatic annotati...
2011-10-28 jprocterJAL-885 more efficient calculation and robust for misma...
2011-10-28 jprocter(JAL-885 JAL-580) ignore invalid RNA structure lines
2011-10-28 jprocterJAL-902 structure conservation row for applet
2011-10-28 jprocter(JAL-970) interactive editing of RNA helix annotation...
2011-10-28 jprocter(JAL-966) efficiency
2011-10-28 jprocter(JAL-889) ensure annotation row is revalidated after...
2011-10-28 jprocter(JAL-885,JAL-580) structure consensus should only be...
2011-10-28 jprocter(JAL-889) ensure latest version of RNA pairlist is...
2011-10-28 jprocterJAL-580 - display position where wuss parsing error...
2011-10-28 jprocterJAL-580 ensure WUSS annotation string is up to date...
2011-10-28 jprocteruse stack rather than vector and throw parse exceptions
2011-10-28 jprocterJAL-580 ensure WUSS annotation is reparsed if necessary...
2011-10-28 jprocterNPE exception if annotation manually edited
2011-10-28 jprocterextend API
2011-10-28 jprocterrefactor to use model API
2011-10-28 jprocter(JAL-963) refactor RNA helix helper class to schemes
2011-10-27 jprocterMerge branch 'refactor_aligcalcs' into develop
2011-10-27 jprocter(JAL-969) efficiency
2011-10-27 jprocter(JAL-969) fix logic bug introduced during refactoring
2011-10-27 jprocter(JAL-969) removed TODOs
2011-10-27 jprocterrenamed menu entry to avoid field name clash
2011-10-27 jprocter(JAL-969) todo test re refactoring and possible change...
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to...
2011-10-27 jprocter(JAL-961) refactored consensus and rna structure consen...
2011-10-27 jprocter(JAL-961) use simplified notification logic to test...
2011-10-27 jprocter(JAL-961) methods for checking calculation status
2011-10-27 jprocter(JAL-961) more calculation annotation and result object...
2011-10-27 jprocter(JAL-967) ensure annotation panel is rendered with...
2011-10-21 jprocterRefactored alignment viewport to use common base, exten...
2011-10-21 jprocternew base class to hold core visualization settings...
2011-10-21 jproctertodo
2011-10-21 jprocterstatic convenience methods for constructing and calcula...
2011-10-21 jprocteruse List rather than Vector
2011-10-21 jprocterextend alignPanel api with OOMHandler call to raise...
2011-10-21 jprocterremove unnecessary import
2011-10-21 jprocterIntroduced new AlignCalcWorker/manager interface.
2011-10-21 jprocterMerge branch 'Release_2_7_Branch_hotfix_JAL-962' into...
2011-10-21 jprocterMerge branch 'Release_2_7_Branch_hotfix_JAL-962' into...
2011-10-21 jprocter(JAL-965) new api methods to allow features to be loade...
2011-10-21 jprocter(JAL-962) rejig parameter processing order so groups...
2011-10-21 jprocter(JAL-962) allow group visibility to be specified before...
2011-10-20 jprocter(JAL-963) jalviewLite RNA alignment example (reusing...
2011-10-18 jprocterMerge branch 'logo_feature_JAL-958' into develop
2011-10-18 jprocterbackout parts of the interface from another development...
2011-10-18 jprocterMerge branch 'logo_feature_JAL-958' into develop
2011-10-18 jprocter(Jalview 3) refactored Graphics2D annotation rendering...
2011-10-17 jprocterMerge branch 'logo_feature_JAL-958' into develop
2011-10-17 jprocter(ahem) new renderer package containing api and renderin...
2011-10-14 jprocterMerge branch 'logo_feature_JAL-958' into develop
2011-10-14 jprocter(JAL-958) documented normalised sequence logo parameter
2011-10-14 jprocter(JAL-958) - normalised sequence logo for applet
2011-10-11 jprocternormalised logo rendering (JAL-958)
2011-10-10 jprocter(JAL-957) change splash screen and about to HTML text...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-10-07 jproctermerge Jan and Lauren's RNA GUI changes into develop...
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_...
2011-10-03 jprocterMerge branch 'Release_2_7_Branch'
2011-10-03 jprocterredact previous commit - fileassociation tag not allowe...
2011-10-03 jprocterremoved unnecessary parameters and changed alignment...
2011-10-03 jproctercompile swingreader component for java 1.5 (JAL-948)
2011-09-28 jprocterMerge branch 'Release_2_7_Branch' Release_2_7
2011-09-28 jprocterjnlps with and without file associations for default...
2011-09-28 jprocterbroken link. rearranged opening pg
2011-09-27 jproctertypo
2011-09-27 jprocterswitch to git release building
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