A B C D E F G H I K L M N O P Q R S T U V W X Y Z _

L

l - Variable in class fr.orsay.lri.varna.views.VueLoadColorMapValues
 
labelDist - Variable in class fr.orsay.lri.varna.models.treealign.TreeAlign
The distance function between labels.
leftBasePosition - Variable in class fr.orsay.lri.varna.models.treealign.RNANodeValue
 
leftNode - Variable in class fr.orsay.lri.varna.models.treealign.AlignedNode
 
leftNucleotide - Variable in class fr.orsay.lri.varna.models.treealign.RNANodeValue
 
lencut - Variable in class fr.orsay.lri.varna.models.naView.NAView
 
length - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser.HelixTemp
 
length - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateHelix
Number of base pairs in the helix.
length - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateUnpairedSequence
Number of (non-paired) bases.
lengths - Variable in class fr.orsay.lri.varna.models.CubicBezierCurve
Array of length n.
LEONTIS_WESTHOF_BP_STYLE - Static variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
levelPosition - Variable in class fr.orsay.lri.varna.models.rna.ModeleStrand
 
limited - Variable in class fr.orsay.lri.varna.views.VueAnnotation
 
LineCommand - Class in fr.orsay.lri.varna.models.export
 
LineCommand(Point2D.Double, Point2D.Double, double) - Constructor for class fr.orsay.lri.varna.models.export.LineCommand
 
lineLength(Point2D.Double, Point2D.Double) - Method in class fr.orsay.lri.varna.models.CubicBezierCurve
 
list - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.MakeEdgeList
 
listBasePair() - Method in class fr.orsay.lri.varna.models.rna.Motif
Create an arrayList which contain all bases which are involved in a base pair.
listStrand() - Method in class fr.orsay.lri.varna.models.rna.Motif
Find all the strands and store them in an arrayList.
load() - Method in class fr.orsay.lri.varna.models.templates.RNATemplate.LoadFromXml
 
load - Variable in class fr.orsay.lri.varna.views.VueLoadColorMapValues
 
loadFile(String) - Method in class fr.orsay.lri.varna.VARNAPanel
 
loadFile(String, boolean) - Method in class fr.orsay.lri.varna.VARNAPanel
 
loadPath(JFileChooser) - Method in class fr.orsay.lri.varna.views.VueUI
 
loadSecStr(Reader) - Method in class fr.orsay.lri.varna.models.rna.RNA
 
loadSecStr(Reader, int) - Method in class fr.orsay.lri.varna.models.rna.RNA
 
loadSecStr(String) - Method in class fr.orsay.lri.varna.models.rna.RNA
 
loadSecStrBPSEQ(Reader) - Method in class fr.orsay.lri.varna.models.rna.RNA
 
loadSecStrCT(Reader) - Method in class fr.orsay.lri.varna.models.rna.RNA
 
loadSecStrDBN(Reader) - Method in class fr.orsay.lri.varna.models.rna.RNA
 
loadSecStrRNAML(Reader) - Method in class fr.orsay.lri.varna.models.rna.RNA
 
loadSession(String) - Method in class fr.orsay.lri.varna.VARNAPanel
 
localObjectFlavor - Static variable in class fr.orsay.lri.varna.components.ReorderableJList
 
locateOrAddList(String) - Method in class fr.orsay.lri.varna.views.VueBases
 
locateSelectedIndex(int, int) - Method in class fr.orsay.lri.varna.components.GradientEditorPanel
 
lockScrolling() - Method in class fr.orsay.lri.varna.VARNAPanel
 
logicToPanel(Point2D.Double) - Method in class fr.orsay.lri.varna.VARNAPanel
 
LOOP - Static variable in class fr.orsay.lri.varna.models.annotations.TextAnnotation
if the annoted text is fixed to a loop;
loop - Variable in class fr.orsay.lri.varna.models.naView.Connection
 
Loop - Class in fr.orsay.lri.varna.models.naView
 
Loop() - Constructor for class fr.orsay.lri.varna.models.naView.Loop
 
loop_count - Variable in class fr.orsay.lri.varna.models.naView.NAView
 
LOOP_DISTANCE - Static variable in class fr.orsay.lri.varna.models.rna.RNA
 
loopnumber - Variable in class fr.orsay.lri.varna.models.naView.Radloop
 
loops - Variable in class fr.orsay.lri.varna.models.naView.NAView
 

A B C D E F G H I K L M N O P Q R S T U V W X Y Z _