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Packages that use RNATemplate | |
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fr.orsay.lri.varna.models.rna | |
fr.orsay.lri.varna.models.templates |
Uses of RNATemplate in fr.orsay.lri.varna.models.rna |
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Methods in fr.orsay.lri.varna.models.rna with parameters of type RNATemplate | |
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RNATemplateMapping |
RNA.drawRNATemplate(RNATemplate template)
Same as below, with default helixLengthAdjustmentMethod. |
RNATemplateMapping |
RNA.drawRNATemplate(RNATemplate template,
int helixLengthAdjustmentMethod)
Draw this RNA like the given template. |
Uses of RNATemplate in fr.orsay.lri.varna.models.templates |
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Fields in fr.orsay.lri.varna.models.templates declared as RNATemplate | |
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private RNATemplate |
RNATemplate.template
Variable containing "this", used by the internal class to access this object. |
Methods in fr.orsay.lri.varna.models.templates that return RNATemplate | |
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static RNATemplate |
RNATemplate.fromXMLDocument(Document xmlDocument)
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static RNATemplate |
RNATemplate.fromXMLFile(File file)
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RNATemplate |
RNATemplate.RNATemplateElement.getParentTemplate()
Returns the template to which this endpoint belongs. |
Methods in fr.orsay.lri.varna.models.templates with parameters of type RNATemplate | |
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static TreeAlignResult<RNANodeValue2,RNANodeValueTemplate> |
RNATemplateAlign.alignRNAWithTemplate(RNA rna,
RNATemplate template)
Align the given RNA with the given RNA template. |
static RNATemplateMapping |
RNATemplateAlign.mapRNAWithTemplate(RNA rna,
RNATemplate template)
Map an RNA with an RNATemplate using tree alignment. |
static void |
RNATemplateAlign.printMapping(RNATemplateMapping mapping,
RNATemplate template,
String sequence)
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