Uses of Package
fr.orsay.lri.varna.models.templates

Packages that use fr.orsay.lri.varna.models.templates
fr.orsay.lri.varna.models.rna   
fr.orsay.lri.varna.models.templates   
 

Classes in fr.orsay.lri.varna.models.templates used by fr.orsay.lri.varna.models.rna
RNANodeValueTemplate
          An node from an RNA template is either a sequence of non-paired bases, a base pair originally belonging to an helix, or a single base originally belonging to an helix but which was broken in order to remove pseudoknots.
RNATemplate
          A model for RNA templates.
RNATemplate.RNATemplateElement.EdgeEndPoint
          An edge endpoint is where an edge can connect.
RNATemplate.RNATemplateHelix
          An helix in an RNA template.
RNATemplateDrawingAlgorithmException
          Exception thrown in case of failure of the template-based RNA drawing algorithm.
RNATemplateMapping
          A RNATemplateMapping is a mapping between bases in an RNA sequence and elements in a RNA template.
 

Classes in fr.orsay.lri.varna.models.templates used by fr.orsay.lri.varna.models.templates
RNANodeValueTemplate
          An node from an RNA template is either a sequence of non-paired bases, a base pair originally belonging to an helix, or a single base originally belonging to an helix but which was broken in order to remove pseudoknots.
RNATemplate
          A model for RNA templates.
RNATemplate.EdgeEndPointPosition
          Position of an endpoint on an endpoint.
RNATemplate.In1Is
          For an helix, tells us whether IN1/OUT1 is the 5' strand (the first strand we meet if we follow the RNA sequence) or the 3' strand (the second we meet if we follow the RNA sequence).
RNATemplate.RNATemplateElement
          An endpoint of an RNA template, it can be an helix or a sequence of non-paired bases.
RNATemplate.RNATemplateElement.EdgeEndPoint
          An edge endpoint is where an edge can connect.
RNATemplate.RNATemplateHelix
          An helix in an RNA template.
RNATemplate.RNATemplateUnpairedSequence
          A sequence of non-paired bases in an RNA template.
RNATemplateDrawingAlgorithmException
          Exception thrown in case of failure of the template-based RNA drawing algorithm.
RNATemplateMapping
          A RNATemplateMapping is a mapping between bases in an RNA sequence and elements in a RNA template.
RNATemplateMappingException
          This exception is thrown when we discover that a template is invalid (it contains impossible connections between elements).