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Packages that use Mapping | |
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fr.orsay.lri.varna | |
fr.orsay.lri.varna.models.rna | |
fr.orsay.lri.varna.models.treealign |
Uses of Mapping in fr.orsay.lri.varna |
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Methods in fr.orsay.lri.varna with parameters of type Mapping | |
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void |
VARNAPanel.drawRNAInterpolated(RNA target,
int drawMode,
Mapping m)
Draws a secondary structure of RNA using a given drawing algorithm and displays it, using an interpolated transition between the previous one and the new one. |
void |
VARNAPanel.drawRNAInterpolated(RNA target,
Mapping m)
Draws a secondary structure of RNA using the default drawing algorithm and displays it, using an interpolated transition between the previous one and the new one. |
void |
VARNAPanel.drawRNAInterpolated(String seq,
String str,
int drawMode,
Mapping m)
Draws a secondary structure of RNA using a given drawing algorithm and displays it, using an interpolated transition between the previous one and the new one. |
void |
VARNAPanel.drawRNAInterpolated(String seq,
String str,
Mapping m)
Draws a secondary structure of RNA using the default drawing algorithm and displays it, using an interpolated transition between the previous one and the new one. |
void |
VARNAPanel.showRNAInterpolated(RNA target,
Mapping m)
Simply displays (does not redraw) a secondary structure , using an interpolated transition between the previous one and the new one. |
void |
VARNAPanel.showRNAInterpolated(RNA target,
VARNAConfig cfg,
Mapping m)
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Uses of Mapping in fr.orsay.lri.varna.models.rna |
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Methods in fr.orsay.lri.varna.models.rna that return Mapping | |
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static Mapping |
Mapping.DefaultMapping(int n,
int m)
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static Mapping |
Mapping.DefaultOutermostMapping(int n,
int m)
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static Mapping |
Mapping.readMappingFromAlignment(String m,
String n)
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Uses of Mapping in fr.orsay.lri.varna.models.treealign |
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Fields in fr.orsay.lri.varna.models.treealign declared as Mapping | |
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private Mapping |
RNATree2.ConvertToMapping.m
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private Mapping |
RNATree.ConvertToMapping.m
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Methods in fr.orsay.lri.varna.models.treealign that return Mapping | |
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Mapping |
RNATree2.ConvertToMapping.convert(Tree<AlignedNode<RNANodeValue2,RNANodeValue2>> tree)
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Mapping |
RNATree.ConvertToMapping.convert(Tree<AlignedNode<RNANodeValue,RNANodeValue>> tree)
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static Mapping |
RNATree2.mappingFromAlignment(Tree<AlignedNode<RNANodeValue2,RNANodeValue2>> alignment)
Convert an RNA tree (with RNANodeValue2) alignment into a Mapping. |
static Mapping |
RNATree.mappingFromAlignment(Tree<AlignedNode<RNANodeValue,RNANodeValue>> alignment)
Convert an RNA tree alignment into a Mapping. |
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