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hasBeenPlaced
- Variable in class fr.orsay.lri.varna.models.rna.
ModeleStrand
hasBeenPlaced()
- Method in class fr.orsay.lri.varna.models.rna.
ModeleStrand
hasCaption()
- Method in class fr.orsay.lri.varna.models.templates.
RNATemplate.RNATemplateHelix
hasNext()
- Method in class fr.orsay.lri.varna.models.templates.
RNATemplate.RNAIterator
hasNext()
- Method in class fr.orsay.lri.varna.models.templates.
RNATemplate.VertexIterator
hasNext()
- Method in class fr.orsay.lri.varna.models.treealign.
Tree.DFSPrefixIterator
hasVirtualLoops()
- Method in class fr.orsay.lri.varna.models.rna.
RNA
headerS(Rectangle2D.Double)
- Method in class fr.orsay.lri.varna.models.export.
PSExport
headerS(Rectangle2D.Double)
- Method in class fr.orsay.lri.varna.models.export.
SecStrDrawingProducer
headerS(Rectangle2D.Double)
- Method in class fr.orsay.lri.varna.models.export.
SVGExport
headerS(Rectangle2D.Double)
- Method in class fr.orsay.lri.varna.models.export.
XFIGExport
heatColorMap()
- Static method in class fr.orsay.lri.varna.models.rna.
ModeleColorMap
height
- Variable in class fr.orsay.lri.varna.models.export.
ArcCommand
HEIGHT
- Static variable in class fr.orsay.lri.varna.views.
PrintTestFrame
HELIX
- Static variable in class fr.orsay.lri.varna.models.annotations.
TextAnnotation
if the annoted text is fixed to a helix;
helix
- Variable in class fr.orsay.lri.varna.models.templates.
RNANodeValueTemplateBasePair
The original template element this node came from.
helix
- Variable in class fr.orsay.lri.varna.models.templates.
RNANodeValueTemplateBrokenBasePair
The original template element this node came from.
HELIX_FACTOR
- Variable in class fr.orsay.lri.varna.models.naView.
NAView
helixesSeq
- Variable in class fr.orsay.lri.varna.models.templates.
RNATemplate.RemovePseudoKnots
The elements of the template as an array, in the order of the RNA sequence.
helixesStruct
- Variable in class fr.orsay.lri.varna.models.templates.
RNATemplate.RemovePseudoKnots
For any i, j = helixesStruct[i] is the index in helixesSeq where the same helix also appears.
helixesStructWithoutPseudoKnots
- Variable in class fr.orsay.lri.varna.models.templates.
RNATemplate.RemovePseudoKnots
The same as helixesStruct, but without the pseudoknots, ie.
HELIXTRANSLATE
- Static variable in class fr.orsay.lri.varna.models.rna.
RNA.DrawRNATemplateMethod
highlightFilter(int, Color, Color, Color)
- Method in class fr.orsay.lri.varna.
VARNAPanel
HighlightRegionAnnotation
- Class in
fr.orsay.lri.varna.models.annotations
HighlightRegionAnnotation(RNA, int, int)
- Constructor for class fr.orsay.lri.varna.models.annotations.
HighlightRegionAnnotation
HighlightRegionAnnotation(ArrayList<ModeleBase>)
- Constructor for class fr.orsay.lri.varna.models.annotations.
HighlightRegionAnnotation
HighlightRegionAnnotation(ArrayList<ModeleBase>, Color, Color, double)
- Constructor for class fr.orsay.lri.varna.models.annotations.
HighlightRegionAnnotation
highlightRegionOpt
- Static variable in class fr.orsay.lri.varna.models.
VARNAConfigLoader
highlightSelectedAnnotation()
- Method in class fr.orsay.lri.varna.
VARNAPanel
highlightSelectedBase(ModeleBase)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Starts highlighting the selected base.
highlightSelectedStem(ModeleBase)
- Method in class fr.orsay.lri.varna.
VARNAPanel
Starts highlighting the selected base.
Overview
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