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Packages that use Loop | |
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fr.orsay.lri.varna.models.naView |
Uses of Loop in fr.orsay.lri.varna.models.naView |
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Fields in fr.orsay.lri.varna.models.naView declared as Loop | |
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private Loop |
Connection.loop
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private Loop |
NAView.root
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Fields in fr.orsay.lri.varna.models.naView with type parameters of type Loop | |
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private ArrayList<Loop> |
NAView.loops
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Methods in fr.orsay.lri.varna.models.naView that return Loop | |
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private Loop |
NAView.construct_loop(int ibase)
Starting at residue ibase, recursively constructs the loop containing said base and all deeper bases. |
Loop |
Connection.getLoop()
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Methods in fr.orsay.lri.varna.models.naView with parameters of type Loop | |
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private int |
NAView.depth(Loop lp)
Determines the depth of loop, lp. |
private void |
NAView.determine_radius(Loop lp,
double lencut)
For the loop pointed to by lp, determine the radius of the loop that will ensure that each base around the loop will have a separation of at least lencut around the circle. |
private int |
NAView.find_ic_middle(int icstart,
int icend,
Connection anchor_connection,
Connection acp,
Loop lp)
Finds the middle of a set of connected connectors. |
void |
Connection.setLoop(Loop loop)
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private void |
NAView.traverse_loop(Loop lp,
Connection anchor_connection)
This is the workhorse of the display program. |
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