A B C D E F G H I K L M N O P Q R S T U V W X Y Z _

U

UIAbout() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAddBP(int, int, ModeleBP) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAnnotationAddFromStructure(int, ArrayList<Integer>) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAnnotationEditFromAnnotation(TextAnnotation) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAnnotationEditFromStructure(int, ArrayList<Integer>) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAnnotationRemoveFromAnnotation(TextAnnotation) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAnnotationRemoveFromStructure(int, ArrayList<Integer>) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAnnotationsAdd() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAnnotationsAddBase(int, int) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAnnotationsAddChemProb(int, int) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAnnotationsAddHelix(int, int) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAnnotationsAddLoop(int, int) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAnnotationsAddPosition(int, int) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAnnotationsAddRegion(int, int) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAnnotationsEdit() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAnnotationsRemove() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAutoAnnotateHelices() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAutoAnnotateInteriorLoops() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAutoAnnotateStrandEnds() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIAutoAnnotateTerminalLoops() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIBaseAllColor() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIBasePairTypeColor() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIBaseTypeColor() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIChooseOutputFile(FileNameExtensionFilter) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIChooseOutputFile(ArrayList<FileNameExtensionFilter>) - Method in class fr.orsay.lri.varna.views.VueUI
Opens a save dialog with right extensions and return the absolute path
UICircular() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIColorBasePair() - Method in class fr.orsay.lri.varna.views.VueUI
 
UICustomZoom() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIEditAllBasePairs() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIEditBasePair() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIExport() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIExportEPS() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIExportJPEG() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIExportPNG() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIExportSVG() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIExportXFIG() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIFile() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIFlipHelix(Point) - Method in class fr.orsay.lri.varna.views.VueUI
Flip an helix around its supporting base
UIGlobalRotation() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIGlobalRotation(double) - Method in class fr.orsay.lri.varna.views.VueUI
 
UILine() - Method in class fr.orsay.lri.varna.views.VueUI
 
UILoadColorMapValues() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIManualInput() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIMOTIFView() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIMoveHelixAtom(int, Point2D.Double) - Method in class fr.orsay.lri.varna.views.VueUI
Move a helix of the rna
UIMoveSingleBase(int, double, double) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIMoveSingleBase(int, Point2D.Double) - Method in class fr.orsay.lri.varna.views.VueUI
 
UINAView() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIPickGapsBasesColor() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIPickSpecialBasesColor() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIPrint() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIRadiate() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIRedo() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIRemoveBP(ModeleBP) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIReset() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIRotateEverything(double, double, double, double, Point, Point) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIRotateHelixAtom(int, Point2D.Double) - Method in class fr.orsay.lri.varna.views.VueUI
 
UISaveAs() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISaveAsBPSEQ() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISaveAsCT() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISaveAsDBN() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISetBackboneColor() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISetBackground() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISetBaseCenter(int, double, double) - Method in class fr.orsay.lri.varna.views.VueUI
 
UISetBaseCenter(int, Point2D.Double) - Method in class fr.orsay.lri.varna.views.VueUI
 
UISetBaseCharacter() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISetBorder() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISetBPHeightIncrement() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISetBPStyle() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISetColorMapCaption() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISetColorMapStyle() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISetColorMapValues() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISetNumPeriod() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISetSpaceBetweenBases() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISetTitle() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISetTitleColor() - Method in class fr.orsay.lri.varna.views.VueUI
 
UISetTitleFont() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIShiftBaseCoord(ArrayList<Integer>, double, double) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIShiftBaseCoord(ArrayList<Integer>, Point2D.Double) - Method in class fr.orsay.lri.varna.views.VueUI
 
UIThicknessBasePair() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIToggleColorGapsBases() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIToggleColorMap() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIToggleColorSpecialBases() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIToggleFlatExteriorLoop() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIToggleGaspinMode() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIToggleModifiable() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIToggleShowNCBP() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIToggleShowNonPlanar() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIToggleShowWarnings() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIUndo() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIVARNAView() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIvueBases() - Method in class fr.orsay.lri.varna.views.VueBases
Create the GUI and show it.
UIvueListeAnnotations() - Method in class fr.orsay.lri.varna.views.VueListeAnnotations
Create the GUI and show it.
UIZoomIn() - Method in class fr.orsay.lri.varna.views.VueUI
 
UIZoomOut() - Method in class fr.orsay.lri.varna.views.VueUI
 
undo() - Method in class fr.orsay.lri.varna.models.VARNAEdits.AddBPEdit
 
undo() - Method in class fr.orsay.lri.varna.models.VARNAEdits.BasesShiftEdit
 
undo() - Method in class fr.orsay.lri.varna.models.VARNAEdits.HelixFlipEdit
 
undo() - Method in class fr.orsay.lri.varna.models.VARNAEdits.HelixRotateEdit
 
undo() - Method in class fr.orsay.lri.varna.models.VARNAEdits.RedrawEdit
 
undo() - Method in class fr.orsay.lri.varna.models.VARNAEdits.RemoveBPEdit
 
undo() - Method in class fr.orsay.lri.varna.models.VARNAEdits.RotateRNAEdit
 
undo() - Method in class fr.orsay.lri.varna.models.VARNAEdits.SingleBaseMoveEdit
 
undo() - Method in class fr.orsay.lri.varna.VARNAPanel
 
uniformParam(double[]) - Method in class fr.orsay.lri.varna.models.CubicBezierCurve
Uniform approximated parametrization.
unitVectors - Variable in class fr.orsay.lri.varna.models.CubicBezierCurve
Array of length n.
UNKNOWN - Static variable in class fr.orsay.lri.varna.models.rna.Mapping
 
unlockScrolling() - Method in class fr.orsay.lri.varna.VARNAPanel
 
unselectedBorder - Variable in class fr.orsay.lri.varna.components.ColorRenderer
 
update() - Method in class fr.orsay.lri.varna.views.VueAnnotation
update the annoted text on the VARNAPanel
updateBoundingBox(double, double) - Method in class fr.orsay.lri.varna.models.export.SecStrDrawingProducer
 
updateColor(Color) - Method in class fr.orsay.lri.varna.views.VueAnnotation
 
updateDialog() - Method in class fr.orsay.lri.varna.views.VueMenu
 
updateTitleHeight() - Method in class fr.orsay.lri.varna.VARNAPanel
 
UPPER_BOUND_COLOR_CODE - Static variable in class fr.orsay.lri.varna.models.export.XFIGExport
 
urlAux - Variable in class fr.orsay.lri.varna.views.VueLoadColorMapValues
 
urlCB - Variable in class fr.orsay.lri.varna.views.VueLoadColorMapValues
 
URLOpt - Static variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
urlTxt - Variable in class fr.orsay.lri.varna.views.VueLoadColorMapValues
 
useDefaultColor() - Method in class fr.orsay.lri.varna.models.rna.ModeleBPStyle
 

A B C D E F G H I K L M N O P Q R S T U V W X Y Z _