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Packages that use fr.orsay.lri.varna.models.templates | |
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fr.orsay.lri.varna.models.rna | |
fr.orsay.lri.varna.models.templates |
Classes in fr.orsay.lri.varna.models.templates used by fr.orsay.lri.varna.models.rna | |
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RNANodeValueTemplate
An node from an RNA template is either a sequence of non-paired bases, a base pair originally belonging to an helix, or a single base originally belonging to an helix but which was broken in order to remove pseudoknots. |
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RNATemplate
A model for RNA templates. |
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RNATemplate.RNATemplateElement.EdgeEndPoint
An edge endpoint is where an edge can connect. |
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RNATemplate.RNATemplateHelix
An helix in an RNA template. |
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RNATemplateDrawingAlgorithmException
Exception thrown in case of failure of the template-based RNA drawing algorithm. |
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RNATemplateMapping
A RNATemplateMapping is a mapping between bases in an RNA sequence and elements in a RNA template. |
Classes in fr.orsay.lri.varna.models.templates used by fr.orsay.lri.varna.models.templates | |
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RNANodeValueTemplate
An node from an RNA template is either a sequence of non-paired bases, a base pair originally belonging to an helix, or a single base originally belonging to an helix but which was broken in order to remove pseudoknots. |
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RNATemplate
A model for RNA templates. |
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RNATemplate.EdgeEndPointPosition
Position of an endpoint on an endpoint. |
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RNATemplate.In1Is
For an helix, tells us whether IN1/OUT1 is the 5' strand (the first strand we meet if we follow the RNA sequence) or the 3' strand (the second we meet if we follow the RNA sequence). |
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RNATemplate.RNATemplateElement
An endpoint of an RNA template, it can be an helix or a sequence of non-paired bases. |
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RNATemplate.RNATemplateElement.EdgeEndPoint
An edge endpoint is where an edge can connect. |
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RNATemplate.RNATemplateHelix
An helix in an RNA template. |
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RNATemplate.RNATemplateUnpairedSequence
A sequence of non-paired bases in an RNA template. |
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RNATemplateDrawingAlgorithmException
Exception thrown in case of failure of the template-based RNA drawing algorithm. |
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RNATemplateMapping
A RNATemplateMapping is a mapping between bases in an RNA sequence and elements in a RNA template. |
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RNATemplateMappingException
This exception is thrown when we discover that a template is invalid (it contains impossible connections between elements). |
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