fr.orsay.lri.varna.models.rna
Class RNA.DrawRNATemplateMethod

java.lang.Object
  extended by fr.orsay.lri.varna.models.rna.RNA.DrawRNATemplateMethod
Enclosing class:
RNA

public static class RNA.DrawRNATemplateMethod
extends Object

What to do in case some helices are of a different length in the template and the actual helix. Possibles values are: 0 - No adjustment is done. A longer than expected helix might bump into an other helix. 1 - Scaling factors (actual length / template length) are calculated, the maximum scaling factor L is extracted, then all helix positions are multiplied by L. 2 - Same as 1, but L is computed as the minimum value such that there are no backbone intersections.


Field Summary
static int HELIXTRANSLATE
           
static int MAXSCALINGFACTOR
           
static int NOADJUST
           
static int NOINTERSECT
           
 
Constructor Summary
RNA.DrawRNATemplateMethod()
           
 
Method Summary
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

NOADJUST

public static int NOADJUST

MAXSCALINGFACTOR

public static int MAXSCALINGFACTOR

NOINTERSECT

public static int NOINTERSECT

HELIXTRANSLATE

public static int HELIXTRANSLATE
Constructor Detail

RNA.DrawRNATemplateMethod

public RNA.DrawRNATemplateMethod()