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Packages that use GraphvizDrawableNodeValue | |
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fr.orsay.lri.varna.models.templates | |
fr.orsay.lri.varna.models.treealign |
Uses of GraphvizDrawableNodeValue in fr.orsay.lri.varna.models.templates |
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Classes in fr.orsay.lri.varna.models.templates that implement GraphvizDrawableNodeValue | |
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class |
RNANodeValueTemplate
An node from an RNA template is either a sequence of non-paired bases, a base pair originally belonging to an helix, or a single base originally belonging to an helix but which was broken in order to remove pseudoknots. |
class |
RNANodeValueTemplateBasePair
See RNANodeValueTemplate. |
class |
RNANodeValueTemplateBrokenBasePair
See RNANodeValueTemplate. |
class |
RNANodeValueTemplateSequence
See RNANodeValueTemplate. |
Uses of GraphvizDrawableNodeValue in fr.orsay.lri.varna.models.treealign |
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Classes in fr.orsay.lri.varna.models.treealign that implement GraphvizDrawableNodeValue | |
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class |
AlignedNode<OriginalNodeValueType1,OriginalNodeValueType2>
The type of node values in an alignment. |
class |
RNANodeValue
We use the following convention: If the node is marked by a couple (n,m) these integers are stored in leftBasePosition and rightBasePosition (ie. |
class |
RNANodeValue2
In this model, nodes are either: 1. |
Method parameters in fr.orsay.lri.varna.models.treealign with type arguments of type GraphvizDrawableNodeValue | |
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private String |
AlignedNode.maybeNodeToGraphvizNodeName(Tree<? extends GraphvizDrawableNodeValue> tree)
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private static String |
TreeGraphviz.subtreeToGraphviz(Tree<? extends GraphvizDrawableNodeValue> tree)
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static String |
TreeGraphviz.treeToGraphviz(Tree<? extends GraphvizDrawableNodeValue> tree,
String title)
Creates a graphviz source from a Tree. |
static void |
TreeGraphviz.treeToGraphvizFile(Tree<? extends GraphvizDrawableNodeValue> tree,
String filename)
Like treeToGraphvizFile(Tree,String,String) but with the title equal to the filename. |
static void |
TreeGraphviz.treeToGraphvizFile(Tree<? extends GraphvizDrawableNodeValue> tree,
String filename,
String title)
Creates a graphviz source file from a Tree. |
static void |
TreeGraphviz.treeToGraphvizPostscript(Tree<? extends GraphvizDrawableNodeValue> tree,
String filename)
Like treeToGraphvizPostscript(Tree,String,String) but with the title equal to the filename. |
static void |
TreeGraphviz.treeToGraphvizPostscript(Tree<? extends GraphvizDrawableNodeValue> tree,
String filename,
String title)
Generates a PostScript file using graphviz. |
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