Uses of Package
fr.orsay.lri.varna.models.treealign

Packages that use fr.orsay.lri.varna.models.treealign
fr.orsay.lri.varna.models.rna   
fr.orsay.lri.varna.models.templates   
fr.orsay.lri.varna.models.treealign   
 

Classes in fr.orsay.lri.varna.models.treealign used by fr.orsay.lri.varna.models.rna
Tree
          An object of this class is a rooted tree, where children are ordered.
 

Classes in fr.orsay.lri.varna.models.treealign used by fr.orsay.lri.varna.models.templates
GraphvizDrawableNodeValue
          A tree can be displayed using graphviz (using class TreeGraphviz) if the node values in the tree implement this interface.
RNANodeValue2
          In this model, nodes are either: 1.
Tree
          An object of this class is a rooted tree, where children are ordered.
TreeAlignLabelDistanceAsymmetric
           
TreeAlignResult
          The result of aligning a tree T1 with a tree T2.
 

Classes in fr.orsay.lri.varna.models.treealign used by fr.orsay.lri.varna.models.treealign
AlignedNode
          The type of node values in an alignment.
ExampleDistance3
           
ExampleDistance3.SequenceAlignResult
           
GraphvizDrawableNodeValue
          A tree can be displayed using graphviz (using class TreeGraphviz) if the node values in the tree implement this interface.
RNANodeValue
          We use the following convention: If the node is marked by a couple (n,m) these integers are stored in leftBasePosition and rightBasePosition (ie.
RNANodeValue.Origin
           
RNANodeValue2
          In this model, nodes are either: 1.
RNATree2Exception
           
Tree
          An object of this class is a rooted tree, where children are ordered.
TreeAlign.TreeData
           
TreeAlignException
           
TreeAlignLabelDistanceAsymmetric
           
TreeAlignLabelDistanceSymmetric
          Same as TreeAlignLabelDistanceAsymmetric, but elements on both trees are of the same type, and the function is symmetric, ie.
TreeAlignResult
          The result of aligning a tree T1 with a tree T2.