Uses of Class
fr.orsay.lri.varna.models.VARNAConfig

Packages that use VARNAConfig
fr.orsay.lri.varna   
fr.orsay.lri.varna.interfaces   
fr.orsay.lri.varna.models   
fr.orsay.lri.varna.models.rna   
 

Uses of VARNAConfig in fr.orsay.lri.varna
 

Fields in fr.orsay.lri.varna declared as VARNAConfig
private  VARNAConfig VARNAPanel._conf
           
 

Methods in fr.orsay.lri.varna that return VARNAConfig
 VARNAConfig VARNAPanel.getConfig()
          Returns the current VARNA Panel configuration.
 

Methods in fr.orsay.lri.varna with parameters of type VARNAConfig
 void VARNAPanel.setConfig(VARNAConfig cfg)
           
 void VARNAPanel.showRNA(RNA t, VARNAConfig cfg)
           
 void VARNAPanel.showRNAInterpolated(RNA target, VARNAConfig cfg, Mapping m)
           
 

Uses of VARNAConfig in fr.orsay.lri.varna.interfaces
 

Methods in fr.orsay.lri.varna.interfaces with parameters of type VARNAConfig
 void InterfaceVARNAListener.onUINewStructure(VARNAConfig v, RNA r)
           
 

Uses of VARNAConfig in fr.orsay.lri.varna.models
 

Fields in fr.orsay.lri.varna.models declared as VARNAConfig
 VARNAConfig FullBackup.config
           
 

Methods in fr.orsay.lri.varna.models that return VARNAConfig
 VARNAConfig VARNAConfig.clone()
           
 

Constructors in fr.orsay.lri.varna.models with parameters of type VARNAConfig
FullBackup(VARNAConfig c, RNA r, String n)
           
 

Uses of VARNAConfig in fr.orsay.lri.varna.models.rna
 

Methods in fr.orsay.lri.varna.models.rna with parameters of type VARNAConfig
(package private)  Point2D.Double RNA.buildCaptionPosition(ModeleBase mb, double heightEstimate, VARNAConfig conf)
           
private  void RNA.drawBasePair(SecStrDrawingProducer out, Point2D.Double orig, Point2D.Double dest, ModeleBP style, VARNAConfig conf)
           
private  void RNA.drawColorMap(VARNAConfig _conf, SecStrDrawingProducer out)
           
 void RNA.drawRNA(int mode, VARNAConfig conf)
           
 void RNA.drawRNA(VARNAConfig conf)
           
 void RNA.drawRNARadiate(VARNAConfig conf)
           
 Color RNA.getBaseInnerColor(int i, VARNAConfig conf)
           
 Color RNA.getBaseNameColor(int i, VARNAConfig conf)
           
 Color RNA.getBaseOuterColor(int i, VARNAConfig conf)
           
 Color RNA.getBasePairColor(ModeleBP bp, VARNAConfig conf)
           
 double RNA.getBasePairThickness(ModeleBP bp, VARNAConfig conf)
           
private  void RNA.renderAnnotations(SecStrDrawingProducer out, double minX, double minY, VARNAConfig conf)
           
private  void RNA.saveRNA(String path, VARNAConfig conf, double scale, SecStrDrawingProducer out)
           
 void RNA.saveRNAEPS(String path, VARNAConfig conf)
           
 void RNA.saveRNASVG(String path, VARNAConfig conf)
           
 void RNA.saveRNAXFIG(String path, VARNAConfig conf)