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B

BACKBONE_DISTANCE - Variable in class fr.orsay.lri.varna.models.naView.NAView
 
backboneColorOpt - Static variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
backgroundColorOpt - Static variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
backupAllCoords() - Method in class fr.orsay.lri.varna.views.VueUI
 
backupThicknesses() - Method in class fr.orsay.lri.varna.views.VueBPThickness
 
BASE - Static variable in class fr.orsay.lri.varna.models.annotations.TextAnnotation
if the annoted text is fixed to a base;
Base - Class in fr.orsay.lri.varna.models.naView
 
Base() - Constructor for class fr.orsay.lri.varna.models.naView.Base
 
BASE_INNER_COLOR_DEFAULT - Static variable in class fr.orsay.lri.varna.models.VARNAConfig
 
BASE_NAME_COLOR_DEFAULT - Static variable in class fr.orsay.lri.varna.models.VARNAConfig
 
BASE_NUMBER_COLOR_DEFAULT - Static variable in class fr.orsay.lri.varna.models.VARNAConfig
 
BASE_OUTLINE_COLOR_DEFAULT - Static variable in class fr.orsay.lri.varna.models.VARNAConfig
 
BASE_PAIR_DISTANCE - Static variable in class fr.orsay.lri.varna.models.rna.RNA
 
BASE_RADIUS - Variable in class fr.orsay.lri.varna.models.rna.RNA
 
baseColor - Variable in class fr.orsay.lri.varna.components.BaseTableModel
 
baseInnerColorOpt - Static variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
BaseList - Class in fr.orsay.lri.varna.models
 
BaseList(BaseList) - Constructor for class fr.orsay.lri.varna.models.BaseList
 
BaseList(String) - Constructor for class fr.orsay.lri.varna.models.BaseList
 
BaseList(String, ModeleBase) - Constructor for class fr.orsay.lri.varna.models.BaseList
 
baseNameColorOpt - Static variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
baseNumbersColorOpt - Static variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
baseOutlineColorOpt - Static variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
bases - Variable in class fr.orsay.lri.varna.models.naView.NAView
 
BaseSpecialColorEditor - Class in fr.orsay.lri.varna.components
 
BaseSpecialColorEditor(VueBases) - Constructor for class fr.orsay.lri.varna.components.BaseSpecialColorEditor
 
basesStyleOpt - Static variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
BaseTableModel - Class in fr.orsay.lri.varna.components
 
BaseTableModel(ArrayList<BaseList>) - Constructor for class fr.orsay.lri.varna.components.BaseTableModel
 
blueColorMap() - Static method in class fr.orsay.lri.varna.models.rna.ModeleColorMap
 
bondColorOpt - Static variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
borderHeightSlider - Variable in class fr.orsay.lri.varna.views.VueBorder
 
borderOpt - Static variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
borderWidthSlider - Variable in class fr.orsay.lri.varna.views.VueBorder
 
BOTH_RNA_COLOR - Static variable in class fr.orsay.lri.varna.models.rna.ModeleBasesComparison
 
boxPolice - Variable in class fr.orsay.lri.varna.views.VueFont
 
bpIncrementOpt - Static variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
bpStyleOpt - Static variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
broken - Variable in class fr.orsay.lri.varna.models.naView.Connection
 
buf - Variable in class fr.orsay.lri.varna.models.export.XFIGExport
 
buildCaptionPosition(ModeleBase, double, VARNAConfig) - Method in class fr.orsay.lri.varna.models.rna.RNA
 
buildCaptionPosition(ModeleBase, double, double) - Method in class fr.orsay.lri.varna.VARNAPanel
 
buildPopupMenu() - Method in class fr.orsay.lri.varna.views.VueMenu
Builds the popup menu
buildTree(int, int, VARNASecDraw.RNATree, RNA) - Method in class fr.orsay.lri.varna.models.rna.VARNASecDraw
 
buildView() - Method in class fr.orsay.lri.varna.views.VueManualInput
 
buildViewFont() - Method in class fr.orsay.lri.varna.views.VueFont
 
buildViewVPTitle() - Method in class fr.orsay.lri.varna.views.VueFont
 
button - Variable in class fr.orsay.lri.varna.components.BaseSpecialColorEditor
 
BUTTONS - Variable in class fr.orsay.lri.varna.components.GradientEditorPanel
 
bwColorMap() - Static method in class fr.orsay.lri.varna.models.rna.ModeleColorMap
 

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