Uses of Class
fr.orsay.lri.varna.VARNAPanel

Packages that use VARNAPanel
fr.orsay.lri.varna.components   
fr.orsay.lri.varna.models   
fr.orsay.lri.varna.models.annotations   
fr.orsay.lri.varna.models.rna   
fr.orsay.lri.varna.views   
 

Uses of VARNAPanel in fr.orsay.lri.varna.components
 

Fields in fr.orsay.lri.varna.components declared as VARNAPanel
private  VARNAPanel VARNAConsole._vp
           
 

Constructors in fr.orsay.lri.varna.components with parameters of type VARNAPanel
VARNAConsole(VARNAPanel vp)
           
 

Uses of VARNAPanel in fr.orsay.lri.varna.models
 

Fields in fr.orsay.lri.varna.models declared as VARNAPanel
private  VARNAPanel VARNAConfigLoader._mainSurface
           
private  VARNAPanel VARNAEdits.BasesShiftEdit._vp
           
private  VARNAPanel VARNAEdits.HelixRotateEdit._vp
           
private  VARNAPanel VARNAEdits.SingleBaseMoveEdit._vp
           
private  VARNAPanel VARNAEdits.HelixFlipEdit._vp
           
private  VARNAPanel VARNAEdits.AddBPEdit._vp
           
private  VARNAPanel VARNAEdits.RemoveBPEdit._vp
           
private  VARNAPanel VARNAEdits.RotateRNAEdit._vp
           
private  VARNAPanel VARNAEdits.RedrawEdit._vp
           
 

Fields in fr.orsay.lri.varna.models with type parameters of type VARNAPanel
protected  ArrayList<VARNAPanel> VARNAConfigLoader._VARNAPanelList
           
 

Methods in fr.orsay.lri.varna.models that return types with arguments of type VARNAPanel
 ArrayList<VARNAPanel> VARNAConfigLoader.createVARNAPanels()
           
 

Methods in fr.orsay.lri.varna.models with parameters of type VARNAPanel
private  void VARNAConfigLoader.applyAnnotations(VARNAPanel vp)
          Format: string:[type=[H|B|L|P]|x=double|y=double|anchor=int|size=int|color=Color];
private  void VARNAConfigLoader.applyAuxBPs(VARNAPanel vp)
           
private  void VARNAConfigLoader.applyBasesCustomStyles(VARNAPanel vp)
           
private  void VARNAConfigLoader.applyBPsCustomStyles(VARNAPanel vp)
           
private  void VARNAConfigLoader.applyChemProbs(VARNAPanel vp)
           
private  void VARNAConfigLoader.applyColorMapStyle(VARNAPanel vp)
           
private  void VARNAConfigLoader.applyColorMapValues(VARNAPanel vp)
           
private  void VARNAConfigLoader.applyHighlightRegion(VARNAPanel vp)
           
 

Constructors in fr.orsay.lri.varna.models with parameters of type VARNAPanel
VARNAEdits.AddBPEdit(int i, int j, ModeleBP msbp, VARNAPanel vp)
           
VARNAEdits.BasesShiftEdit(ArrayList<Integer> indices, double dx, double dy, VARNAPanel p)
           
VARNAEdits.HelixFlipEdit(Point h, VARNAPanel vp)
           
VARNAEdits.HelixRotateEdit(double delta, double base, double pLimL, double pLimR, Point h, Point ml, VARNAPanel vp)
           
VARNAEdits.RedrawEdit(int newMode, VARNAPanel vp)
           
VARNAEdits.RedrawEdit(int newMode, VARNAPanel vp, boolean newFlat)
           
VARNAEdits.RedrawEdit(VARNAPanel vp, boolean newFlat)
           
VARNAEdits.RemoveBPEdit(int i, int j, ModeleBP msbp, VARNAPanel vp)
           
VARNAEdits.RotateRNAEdit(double angle, VARNAPanel vp)
           
VARNAEdits.SingleBaseMoveEdit(int index, double nx, double ny, VARNAPanel p)
           
 

Uses of VARNAPanel in fr.orsay.lri.varna.models.annotations
 

Methods in fr.orsay.lri.varna.models.annotations with parameters of type VARNAPanel
static HighlightRegionAnnotation HighlightRegionAnnotation.parseHighlightRegionAnnotation(String txt, VARNAPanel vp)
           
 

Uses of VARNAPanel in fr.orsay.lri.varna.models.rna
 

Fields in fr.orsay.lri.varna.models.rna declared as VARNAPanel
static VARNAPanel VARNASecDraw._vp
           
 

Uses of VARNAPanel in fr.orsay.lri.varna.views
 

Fields in fr.orsay.lri.varna.views declared as VARNAPanel
private  VARNAPanel VueZoom._vp
           
private  VARNAPanel VueUI._vp
           
private  VARNAPanel VueStyleBP._vp
           
private  VARNAPanel VueSpaceBetweenBases._vp
           
private  VARNAPanel VueNumPeriod._vp
           
private  VARNAPanel VueMenu._vp
           
private  VARNAPanel VueManualInput._vp
           
(package private)  VARNAPanel VueLoadColorMapValues._vp
           
private  VARNAPanel VueListeAnnotations._vp
           
private  VARNAPanel VueHighlightRegionEdit._vp
           
private  VARNAPanel VueGlobalRotation._vp
           
private  VARNAPanel VueFont._vp
           
private  VARNAPanel VueColorMapStyle._vp
           
private  VARNAPanel VueChemProbAnnotation._vp
           
private  VARNAPanel VueBPType._vp
           
private  VARNAPanel VueBPThickness._vp
           
private  VARNAPanel VueBPList._vp
           
private  VARNAPanel VueBPHeightIncrement._vp
           
private  VARNAPanel VueBorder._vp
           
private  VARNAPanel VueBaseValues._vp
           
private  VARNAPanel VueBases._vp
           
private  VARNAPanel VueAnnotation._vp
           
(package private)  VARNAPanel VueAboutPanel.AboutAnimator._vp
           
 

Methods in fr.orsay.lri.varna.views that return VARNAPanel
 VARNAPanel VueZoom.get_vp()
           
 VARNAPanel VueStyleBP.get_vp()
           
 VARNAPanel VueSpaceBetweenBases.get_vp()
           
 VARNAPanel VueNumPeriod.get_vp()
           
 VARNAPanel VueMenu.get_vp()
           
 VARNAPanel VueListeAnnotations.get_vp()
           
 VARNAPanel VueHighlightRegionEdit.get_vp()
           
 VARNAPanel VueGlobalRotation.get_vp()
           
 VARNAPanel VueChemProbAnnotation.get_vp()
           
 VARNAPanel VueBPType.get_vp()
           
 VARNAPanel VueBPThickness.get_vp()
           
 VARNAPanel VueBPHeightIncrement.get_vp()
           
 VARNAPanel VueBorder.get_vp()
           
 VARNAPanel VueBases.get_vp()
           
 VARNAPanel VueAnnotation.get_vp()
           
 

Constructors in fr.orsay.lri.varna.views with parameters of type VARNAPanel
VueAboutPanel.AboutAnimator(VARNAPanel vp)
           
VueAnnotation(VARNAPanel vp)
          creates a view for a new annoted text, without limited option
VueAnnotation(VARNAPanel vp, boolean limited)
          creates a view for a new annoted text
VueAnnotation(VARNAPanel vp, int x, int y)
          creates a view for a new annoted text at a given position, without limited option
VueAnnotation(VARNAPanel vp, int x, int y, boolean limited)
          creates a view for a new annoted text at a given position, without limited option
VueAnnotation(VARNAPanel vp, TextAnnotation textAnnot, boolean newAnnotation)
          creates a view for an annoted text, without limited option
VueAnnotation(VARNAPanel vp, TextAnnotation textAnnot, boolean reduite, boolean newAnnotation)
          creates a view for an annoted text
VueBases(VARNAPanel vp, int mode)
           
VueBaseValues(VARNAPanel vp)
           
VueBorder(VARNAPanel vp)
           
VueBPHeightIncrement(VARNAPanel vp)
           
VueBPList(VARNAPanel vp)
           
VueBPThickness(VARNAPanel vp, ArrayList<ModeleBP> msbp)
           
VueBPType(VARNAPanel vp, ModeleBP msbp)
           
VueChemProbAnnotation(VARNAPanel vp, ChemProbAnnotation an)
           
VueColorMapStyle(VARNAPanel vp)
           
VueFont(VARNAPanel vp)
           
VueGlobalRotation(VARNAPanel vp)
           
VueHighlightRegionEdit(VARNAPanel vp, HighlightRegionAnnotation an)
           
VueListeAnnotations(VARNAPanel vp, int type)
          creates the view
VueLoadColorMapValues(VARNAPanel vp)
           
VueManualInput(VARNAPanel vp)
           
VueMenu(VARNAPanel vp)
           
VueNumPeriod(VARNAPanel vp)
           
VueSpaceBetweenBases(VARNAPanel vp)
           
VueStyleBP(VARNAPanel vp)
           
VueUI(VARNAPanel vp)
           
VueZoom(VARNAPanel vp)