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Packages that use Connection | |
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fr.orsay.lri.varna.models.naView |
Uses of Connection in fr.orsay.lri.varna.models.naView |
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Fields in fr.orsay.lri.varna.models.naView with type parameters of type Connection | |
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private Hashtable<Integer,Connection> |
Loop._connections
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private ArrayList<Connection> |
Loop.connections
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Methods in fr.orsay.lri.varna.models.naView that return Connection | |
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Connection |
Loop.getConnection(int i)
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Methods in fr.orsay.lri.varna.models.naView with parameters of type Connection | |
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void |
Loop.addConnection(int i,
Connection c)
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private boolean |
NAView.connected_connection(Connection cp,
Connection cpnext)
Determines if the connections cp and cpnext are connected |
private void |
NAView.construct_extruded_segment(Connection cp,
Connection cpnext)
Constructs the segment between cp and cpnext as a circle if possible. |
private int |
NAView.find_ic_middle(int icstart,
int icend,
Connection anchor_connection,
Connection acp,
Loop lp)
Finds the middle of a set of connected connectors. |
private void |
NAView.generate_region(Connection cp)
Generates the coordinates for the base pairing region of a connection given the position of the starting base pair. |
void |
Loop.setConnection(int i,
Connection c)
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private void |
NAView.traverse_loop(Loop lp,
Connection anchor_connection)
This is the workhorse of the display program. |
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