Constant Field Values


Contents
fr.orsay.*

fr.orsay.lri.varna.VARNAPanel
private static final long serialVersionUID 8194421570308956001L

fr.orsay.lri.varna.components.ActionRenderer
private static final long serialVersionUID 1L

fr.orsay.lri.varna.components.AnnotationTableModel
private static final long serialVersionUID 1L

fr.orsay.lri.varna.components.BaseSpecialColorEditor
protected static final String EDIT "edit"
private static final long serialVersionUID 1L

fr.orsay.lri.varna.components.BaseTableModel
private static final long serialVersionUID 1L

fr.orsay.lri.varna.components.ColorRenderer
private static final long serialVersionUID 1L

fr.orsay.lri.varna.components.GradientEditorPanel
private static final int GAP 4
private static final int PALETTE_HEIGHT 11
private static final int REMOVE_HEIGHT 11
private static final int TOLERANCE 5
private static final int TRIGGERS_SEMI_WIDTH 2

fr.orsay.lri.varna.models.FullBackup
private static final long serialVersionUID -5468893731117925140L

fr.orsay.lri.varna.models.VARNAConfig
public static final double DEFAULT_AMOUNT 1.2
public static final double DEFAULT_BASE_OUTLINE_THICKNESS 1.5
public static final double DEFAULT_BP_INCREMENT 0.65
public static final double DEFAULT_BP_THICKNESS 1.0
public static final double DEFAULT_DIST_NUMBERS 3.0
public static final int DEFAULT_PERIOD 10
public static final double DEFAULT_ZOOM 1.0
public static final int MAJOR_VERSION 3
public static final double MAX_AMOUNT 2.0
public static final double MAX_ZOOM 60.0
public static final double MIN_AMOUNT 1.01
public static final double MIN_ZOOM 0.5
public static final int MINOR_VERSION 8
private static final long serialVersionUID 2853916694420964233L

fr.orsay.lri.varna.models.VARNAConfigLoader
public static final String ALGORITHM_CIRCULAR "circular"
public static final String ALGORITHM_LINE "line"
public static final String ALGORITHM_MOTIF_VIEW "motifview"
public static final String ALGORITHM_NAVIEW "naview"
public static final String ALGORITHM_RADIATE "radiate"
public static final String ALGORITHM_VARNA_VIEW "varnaview"
public static final String LEONTIS_WESTHOF_BP_STYLE "lw"
private static final int MAXSTYLE 50
public static final String NONE_BP_STYLE "none"
public static final String RNAVIZ_BP_STYLE "rnaviz"
public static final String SIMPLE_BP_STYLE "simple"

fr.orsay.lri.varna.models.VARNAEdits
public static final double MAX_DISTANCE 55.0

fr.orsay.lri.varna.models.annotations.ChemProbAnnotation
private static final long serialVersionUID 5833315460145031242L

fr.orsay.lri.varna.models.annotations.HighlightRegionAnnotation
public static final double DEFAULT_RADIUS 16.0
public static final int NUM_STEPS_ROUNDED_CORNERS 10
private static final long serialVersionUID 7087014168028684775L

fr.orsay.lri.varna.models.annotations.TextAnnotation
public static final int BASE 1
public static final int HELIX 2
public static final int LOOP 3
public static final int POSITION 0
private static final long serialVersionUID 465236085501860747L

fr.orsay.lri.varna.models.export.SecStrDrawingProducer
public static final int FONT_COURIER 12
public static final int FONT_COURIER_BOLD 13
public static final int FONT_COURIER_BOLD_OBLIQUE 15
public static final int FONT_COURIER_OBLIQUE 14
public static final int FONT_HELVETICA 16
public static final int FONT_HELVETICA_BOLD 18
public static final int FONT_HELVETICA_BOLD_OBLIQUE 19
public static final int FONT_HELVETICA_OBLIQUE 17
public static final int FONT_TIMES_BOLD 1
public static final int FONT_TIMES_BOLD_ITALIC 3
public static final int FONT_TIMES_ITALIC 2
public static final int FONT_TIMES_ROMAN 0

fr.orsay.lri.varna.models.export.XFIGExport
private static final int UPPER_BOUND_COLOR_CODE 543

fr.orsay.lri.varna.models.naView.NAView
private final double ANUM 9999.0
private final int MAXITER 500
private final double RADIUS_REDUCTION_FACTOR 1.4

fr.orsay.lri.varna.models.rna.Mapping
private static final long serialVersionUID -3031358968555310380L
public static final int UNKNOWN -1

fr.orsay.lri.varna.models.rna.ModeleBaseNucleotide
private static final long serialVersionUID -5493938366569588113L

fr.orsay.lri.varna.models.rna.ModeleBasesComparison
private static final long serialVersionUID -2733063250714562463L

fr.orsay.lri.varna.models.rna.ModeleBP
public static final String PARAM_COLOR "color"
public static final String PARAM_EDGE3 "edge3"
public static final String PARAM_EDGE5 "edge5"
public static final String PARAM_STERICITY "stericity"
public static final String PARAM_THICKNESS "thickness"
private static final long serialVersionUID -1344722280822711931L
public static final String VALUE_CIS "cis"
public static final String VALUE_HOOGSTEEN "h"
public static final String VALUE_SUGAR "s"
public static final String VALUE_TRANS "trans"
public static final String VALUE_WATSON_CRICK "wc"

fr.orsay.lri.varna.models.rna.ModeleBPStyle
private static final long serialVersionUID 3006493290669550139L

fr.orsay.lri.varna.models.rna.ModeleColorMap
private static final long serialVersionUID 4055062096061553106L

fr.orsay.lri.varna.models.rna.ModeleStyleBase
public static final String PARAM_INNER_COLOR "fill"
public static final String PARAM_NUMBER_COLOR "number"
public static final String PARAM_OUTLINE_COLOR "outline"
public static final String PARAM_TEXT_COLOR "label"
private static final long serialVersionUID -4331494086323517208L

fr.orsay.lri.varna.models.rna.RNA
public static final double BASE_PAIR_DISTANCE 65.0
public static final int DEFAULT_DRAW_MODE 2
public static final int DRAW_MODE_CIRCULAR 1
public static final int DRAW_MODE_LINEAR 4
public static final int DRAW_MODE_MOTIFVIEW 6
public static final int DRAW_MODE_NAVIEW 3
public static final int DRAW_MODE_RADIATE 2
public static final int DRAW_MODE_TEMPLATE 7
public static final int DRAW_MODE_VARNA_VIEW 5
public static final int FILE_TYPE_BPSEQ 1
public static final int FILE_TYPE_CT 2
public static final int FILE_TYPE_DBN 3
public static final int FILE_TYPE_RNAML 4
public static final int FILE_TYPE_UNKNOWN 5
public static final double LOOP_DISTANCE 40.0
public static final double MULTILOOP_DISTANCE 35.0
private static final long serialVersionUID 7541274455751497303L
public static final double VIRTUAL_LOOP_RADIUS 40.0

fr.orsay.lri.varna.models.rna.StructureTemp
private static final long serialVersionUID -436852923461989105L

fr.orsay.lri.varna.models.rna.VARNAPoint
private static final long serialVersionUID 8815373295131046029L

fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateUnpairedSequence
private static final double defaultTangentVectorAngle 1.5707963267948966
private static final double defaultTangentVectorLength 100.0

fr.orsay.lri.varna.models.templates.RNATemplateDrawingAlgorithmException
private static final long serialVersionUID 1701307036024533400L

fr.orsay.lri.varna.models.templates.RNATemplateMappingException
private static final long serialVersionUID -201638492590138354L

fr.orsay.lri.varna.models.treealign.RNANodeValue2WrongTypeException
private static final long serialVersionUID -2709057098523675088L

fr.orsay.lri.varna.models.treealign.RNATree2Exception
private static final long serialVersionUID 2034802149835891010L

fr.orsay.lri.varna.models.treealign.TreeAlignException
private static final long serialVersionUID 7782935062930780231L

fr.orsay.lri.varna.views.fr.orsay.lri.varna.views.PrintTestFrame
private static final int HEIGHT 300
private static final int WIDTH 300

fr.orsay.lri.varna.views.VueAboutPanel
private static final long serialVersionUID 4525998278180950602L

fr.orsay.lri.varna.views.VueBases
public static final int ALL_MODE 2
public static final int COUPLE_MODE 3
public static final int KIND_MODE 1
private static final long serialVersionUID 1L

fr.orsay.lri.varna.views.fr.orsay.lri.varna.views.VueBPList.BPTableModel
private static final long serialVersionUID 1L

fr.orsay.lri.varna.views.VueListeAnnotations
public static final int EDIT 1
public static final int REMOVE 0
private static final long serialVersionUID 1L

fr.orsay.lri.varna.views.VueLoadColorMapValues
private static final long serialVersionUID -1648400107478203724L

fr.orsay.lri.varna.views.VueMenu
private static final long serialVersionUID 1L