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Packages that use RNATemplateMapping | |
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fr.orsay.lri.varna.models.rna | |
fr.orsay.lri.varna.models.templates |
Uses of RNATemplateMapping in fr.orsay.lri.varna.models.rna |
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Methods in fr.orsay.lri.varna.models.rna that return RNATemplateMapping | |
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RNATemplateMapping |
RNA.drawRNATemplate(RNATemplate template)
Same as below, with default helixLengthAdjustmentMethod. |
RNATemplateMapping |
RNA.drawRNATemplate(RNATemplate template,
int helixLengthAdjustmentMethod)
Draw this RNA like the given template. |
Methods in fr.orsay.lri.varna.models.rna with parameters of type RNATemplateMapping | |
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private void |
RNA.computeHelixTranslations(Tree<RNANodeValueTemplate> tree,
Map<RNATemplate.RNATemplateHelix,Point2D.Double> translateVectors,
RNATemplateMapping mapping,
Point2D.Double parentDeltaVector)
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private Map<RNATemplate.RNATemplateHelix,Point2D.Double> |
RNA.computeHelixTranslations(Tree<RNANodeValueTemplate> tree,
RNATemplateMapping mapping)
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Uses of RNATemplateMapping in fr.orsay.lri.varna.models.templates |
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Methods in fr.orsay.lri.varna.models.templates that return RNATemplateMapping | |
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static RNATemplateMapping |
RNATemplateAlign.makeTemplateMapping(TreeAlignResult<RNANodeValue2,RNANodeValueTemplate> alignResult,
RNA rna)
This method takes an alignment between a tree of RNANodeValue2 of RNANodeValue and a tree of RNANodeValue2 of RNANodeValueTemplate, and the original RNA object that was used to create the first tree in the alignment. |
static RNATemplateMapping |
RNATemplateAlign.mapRNAWithTemplate(RNA rna,
RNATemplate template)
Map an RNA with an RNATemplate using tree alignment. |
Methods in fr.orsay.lri.varna.models.templates with parameters of type RNATemplateMapping | |
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static void |
RNATemplateAlign.printMapping(RNATemplateMapping mapping,
RNATemplate template,
String sequence)
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