A B C D E F G H I K L M N O P Q R S T U V W X Y Z _

H

hasBeenPlaced - Variable in class fr.orsay.lri.varna.models.rna.ModeleStrand
 
hasBeenPlaced() - Method in class fr.orsay.lri.varna.models.rna.ModeleStrand
 
hasCaption() - Method in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateHelix
 
hasNext() - Method in class fr.orsay.lri.varna.models.templates.RNATemplate.RNAIterator
 
hasNext() - Method in class fr.orsay.lri.varna.models.templates.RNATemplate.VertexIterator
 
hasNext() - Method in class fr.orsay.lri.varna.models.treealign.Tree.DFSPrefixIterator
 
hasVirtualLoops() - Method in class fr.orsay.lri.varna.models.rna.RNA
 
headerS(Rectangle2D.Double) - Method in class fr.orsay.lri.varna.models.export.PSExport
 
headerS(Rectangle2D.Double) - Method in class fr.orsay.lri.varna.models.export.SecStrDrawingProducer
 
headerS(Rectangle2D.Double) - Method in class fr.orsay.lri.varna.models.export.SVGExport
 
headerS(Rectangle2D.Double) - Method in class fr.orsay.lri.varna.models.export.XFIGExport
 
heatColorMap() - Static method in class fr.orsay.lri.varna.models.rna.ModeleColorMap
 
height - Variable in class fr.orsay.lri.varna.models.export.ArcCommand
 
HEIGHT - Static variable in class fr.orsay.lri.varna.views.PrintTestFrame
 
HELIX - Static variable in class fr.orsay.lri.varna.models.annotations.TextAnnotation
if the annoted text is fixed to a helix;
helix - Variable in class fr.orsay.lri.varna.models.templates.RNANodeValueTemplateBasePair
The original template element this node came from.
helix - Variable in class fr.orsay.lri.varna.models.templates.RNANodeValueTemplateBrokenBasePair
The original template element this node came from.
HELIX_FACTOR - Variable in class fr.orsay.lri.varna.models.naView.NAView
 
helixesSeq - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RemovePseudoKnots
The elements of the template as an array, in the order of the RNA sequence.
helixesStruct - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RemovePseudoKnots
For any i, j = helixesStruct[i] is the index in helixesSeq where the same helix also appears.
helixesStructWithoutPseudoKnots - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RemovePseudoKnots
The same as helixesStruct, but without the pseudoknots, ie.
HELIXTRANSLATE - Static variable in class fr.orsay.lri.varna.models.rna.RNA.DrawRNATemplateMethod
 
highlightFilter(int, Color, Color, Color) - Method in class fr.orsay.lri.varna.VARNAPanel
 
HighlightRegionAnnotation - Class in fr.orsay.lri.varna.models.annotations
 
HighlightRegionAnnotation(RNA, int, int) - Constructor for class fr.orsay.lri.varna.models.annotations.HighlightRegionAnnotation
 
HighlightRegionAnnotation(ArrayList<ModeleBase>) - Constructor for class fr.orsay.lri.varna.models.annotations.HighlightRegionAnnotation
 
HighlightRegionAnnotation(ArrayList<ModeleBase>, Color, Color, double) - Constructor for class fr.orsay.lri.varna.models.annotations.HighlightRegionAnnotation
 
highlightRegionOpt - Static variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
highlightSelectedAnnotation() - Method in class fr.orsay.lri.varna.VARNAPanel
 
highlightSelectedBase(ModeleBase) - Method in class fr.orsay.lri.varna.VARNAPanel
Starts highlighting the selected base.
highlightSelectedStem(ModeleBase) - Method in class fr.orsay.lri.varna.VARNAPanel
Starts highlighting the selected base.

A B C D E F G H I K L M N O P Q R S T U V W X Y Z _