fr.orsay.lri.varna.models.treealign
Class RNATree2.ConvertToMapping

java.lang.Object
  extended by fr.orsay.lri.varna.models.treealign.RNATree2.ConvertToMapping
Enclosing class:
RNATree2

private static class RNATree2.ConvertToMapping
extends Object


Field Summary
private  Mapping m
           
(package private)  ExampleDistance3 sequenceAligner
           
 
Constructor Summary
private RNATree2.ConvertToMapping()
           
 
Method Summary
 Mapping convert(Tree<AlignedNode<RNANodeValue2,RNANodeValue2>> tree)
           
private  void convertSubTree(Tree<AlignedNode<RNANodeValue2,RNANodeValue2>> tree)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

m

private Mapping m

sequenceAligner

ExampleDistance3 sequenceAligner
Constructor Detail

RNATree2.ConvertToMapping

private RNATree2.ConvertToMapping()
Method Detail

convert

public Mapping convert(Tree<AlignedNode<RNANodeValue2,RNANodeValue2>> tree)
                throws fr.orsay.lri.varna.exceptions.MappingException
Throws:
fr.orsay.lri.varna.exceptions.MappingException

convertSubTree

private void convertSubTree(Tree<AlignedNode<RNANodeValue2,RNANodeValue2>> tree)
                     throws fr.orsay.lri.varna.exceptions.MappingException
Throws:
fr.orsay.lri.varna.exceptions.MappingException