A B C D E F G H I K L M N O P Q R S T U V W X Y Z _

_

_ajustement - Variable in class fr.orsay.lri.varna.models.rna.Motif
 
_algo - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_an - Variable in class fr.orsay.lri.varna.views.VueChemProbAnnotation
 
_an - Variable in class fr.orsay.lri.varna.views.VueHighlightRegionEdit
 
_ancrage - Variable in class fr.orsay.lri.varna.models.annotations.TextAnnotation
 
_angle - Variable in class fr.orsay.lri.varna.models.annotations.TextAnnotation
 
_angle - Variable in class fr.orsay.lri.varna.models.VARNAEdits.RotateRNAEdit
 
_anim - Variable in class fr.orsay.lri.varna.views.VueAboutPanel
 
_annotations - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_appartenance - Variable in class fr.orsay.lri.varna.models.rna.ModeleBasesComparison
This ModeleBasesComparison owning statement.
_autoCenter - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_autoFit - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_autoHelices - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_autoInteriorLoops - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_autoTerminalLoops - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_auxBPs - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_backboneColor - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_backboneColor - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_backgroundColor - Variable in class fr.orsay.lri.varna.models.export.SecStrDrawingProducer
 
_backgroundColor - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_backgroundColor - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_backup - Variable in class fr.orsay.lri.varna.views.VueBaseValues
 
_backup - Variable in class fr.orsay.lri.varna.views.VueBPList
 
_backup - Variable in class fr.orsay.lri.varna.views.VueChemProbAnnotation
 
_backup - Variable in class fr.orsay.lri.varna.views.VueColorMapStyle
 
_backup - Variable in class fr.orsay.lri.varna.views.VueHighlightRegionEdit
 
_backupCenters - Variable in class fr.orsay.lri.varna.models.VARNAEdits.RedrawEdit
 
_backupCoords - Variable in class fr.orsay.lri.varna.models.VARNAEdits.RedrawEdit
 
_backupSelection - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_backupThicknesses - Variable in class fr.orsay.lri.varna.views.VueBPThickness
 
_base - Variable in class fr.orsay.lri.varna.models.export.CircleCommand
 
_base - Variable in class fr.orsay.lri.varna.models.export.FillCircleCommand
 
_base - Variable in class fr.orsay.lri.varna.models.export.TextCommand
 
_base - Variable in class fr.orsay.lri.varna.models.VARNAEdits.HelixRotateEdit
 
_base1 - Variable in class fr.orsay.lri.varna.models.rna.ModeleBasesComparison
The base of the first RNA associated with the base of the second RNA.
_base2 - Variable in class fr.orsay.lri.varna.models.rna.ModeleBasesComparison
The base of the second RNA associated with the base of the first RNA.
_base_inner_color - Variable in class fr.orsay.lri.varna.models.rna.ModeleStyleBase
 
_base_name_color - Variable in class fr.orsay.lri.varna.models.rna.ModeleStyleBase
 
_base_number_color - Variable in class fr.orsay.lri.varna.models.rna.ModeleStyleBase
 
_base_outline_color - Variable in class fr.orsay.lri.varna.models.rna.ModeleStyleBase
 
_baseInnerColor - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_baseNameColor - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_baseNumColor - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_baseOutlineColor - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_bases - Variable in class fr.orsay.lri.varna.models.annotations.HighlightRegionAnnotation
 
_bases - Variable in class fr.orsay.lri.varna.models.BaseList
 
_basesStyleList - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_baseThickness - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_bb - Variable in class fr.orsay.lri.varna.models.export.SVGExport
 
_bent - Variable in class fr.orsay.lri.varna.models.rna.ModeleBPStyle
 
_blink - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_bondColor - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_bondColor - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_border - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_border - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_BP - Variable in class fr.orsay.lri.varna.models.rna.ModeleBase
 
_bpHeightIncrement - Variable in class fr.orsay.lri.varna.models.rna.RNA
 
_bpHeightIncrement - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_bpIncrement - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_bpseqFilter - Variable in class fr.orsay.lri.varna.views.VueUI
 
_bpStyle - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_bpThickness - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_btn - Variable in class fr.orsay.lri.varna.components.ActionEditor
 
_buffer - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_c - Variable in class fr.orsay.lri.varna.models.rna.ModeleBaseNucleotide
 
_caption - Variable in class fr.orsay.lri.varna.models.BaseList
 
_cb - Variable in class fr.orsay.lri.varna.views.VueColorMapStyle
 
_center - Variable in class fr.orsay.lri.varna.models.rna.ModeleBase
The nearest loop center of this InterfaceBase.
_checked - Variable in class fr.orsay.lri.varna.models.rna.ModeleBase
 
_ChemProbAnnotations - Variable in class fr.orsay.lri.varna.models.rna.RNA
 
_chemProbs - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_children - Variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw.HelixEmbedding
 
_clip - Variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw.HelixEmbedding
 
_cm - Variable in enum fr.orsay.lri.varna.models.rna.ModeleColorMap.NamedColorMapTypes
 
_cm - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_cmb - Variable in class fr.orsay.lri.varna.views.VueStyleBP
 
_code - Variable in class fr.orsay.lri.varna.views.VueColorMapStyle
 
_color - Variable in class fr.orsay.lri.varna.models.annotations.ChemProbAnnotation
 
_color - Variable in class fr.orsay.lri.varna.models.annotations.TextAnnotation
 
_color - Variable in class fr.orsay.lri.varna.models.export.ColorCommand
 
_color - Variable in class fr.orsay.lri.varna.models.export.FillCircleCommand
 
_color - Variable in class fr.orsay.lri.varna.models.export.FillPolygonCommand
 
_color - Variable in class fr.orsay.lri.varna.models.export.SecStrProducerGraphics
 
_color - Variable in class fr.orsay.lri.varna.models.rna.ModeleBPStyle
 
_colorDashBases - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_colorie - Variable in class fr.orsay.lri.varna.models.rna.ModeleBase
TRUE if this InterfaceBase has to be colored, else FALSE.
_colorMapCaption - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_colorMapCaption - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_colorMapHeight - Variable in class fr.orsay.lri.varna.models.VARNAConfig
Various options.
_colorMapStyle - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_colorMapValues - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_colorMapWidth - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_colorMapXOffset - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_colorMapYOffset - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_colorSpecialBases - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_commands - Variable in class fr.orsay.lri.varna.models.export.SecStrDrawingProducer
 
_commands - Static variable in class fr.orsay.lri.varna.models.rna.ModeleBaseNucleotide
 
_comparisonMode - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_comparisonMode - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_conf - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_connections - Variable in class fr.orsay.lri.varna.models.naView.Loop
 
_contentPanel - Variable in class fr.orsay.lri.varna.components.VARNAConsole
 
_controlerMenu - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_controleurSpecialColorEditor - Variable in class fr.orsay.lri.varna.components.BaseSpecialColorEditor
 
_controleurVueAnnotation - Variable in class fr.orsay.lri.varna.views.VueAnnotation
 
_coords - Variable in class fr.orsay.lri.varna.models.rna.ModeleBase
The coordinate representation of this InterfaceBase on the final graphic.
_ctFilter - Variable in class fr.orsay.lri.varna.views.VueUI
 
_curColor - Variable in class fr.orsay.lri.varna.models.export.SecStrDrawingProducer
 
_currentModel - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_customBases - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_customBPs - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_dashBasesColor - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_dashBasesColor - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_dashedStroke - Variable in class fr.orsay.lri.varna.models.export.SwingGraphics
 
_dbnFilter - Variable in class fr.orsay.lri.varna.views.VueUI
 
_debug - Variable in class fr.orsay.lri.varna.models.export.SwingGraphics
 
_debug - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_debugShape - Variable in class fr.orsay.lri.varna.models.rna.RNA
 
_decalage - Variable in class fr.orsay.lri.varna.models.rna.Motif
 
_defaultRNA - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_definedCols - Variable in class fr.orsay.lri.varna.models.export.XFIGExport
 
_delta - Variable in class fr.orsay.lri.varna.models.VARNAEdits.HelixRotateEdit
 
_depth - Variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw
 
_dest - Variable in class fr.orsay.lri.varna.models.export.LineCommand
 
_dims - Variable in class fr.orsay.lri.varna.models.export.RectangleCommand
 
_disabled - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_distNumbers - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_drawBackbone - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_drawBackbone - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_drawBackground - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_drawBBox - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_drawBorder - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_drawColorMap - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_drawColorMap - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_drawMode - Variable in class fr.orsay.lri.varna.models.rna.RNA
The draw algorithm mode
_drawn - Variable in class fr.orsay.lri.varna.models.rna.RNA
 
_drawNC - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_drawnNonCanonicalBP - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_drawnNonPlanarBP - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_drawOutlineBase - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_drawTertiary - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_dx - Variable in class fr.orsay.lri.varna.models.VARNAEdits.BasesShiftEdit
 
_dy - Variable in class fr.orsay.lri.varna.models.VARNAEdits.BasesShiftEdit
 
_edge3 - Variable in class fr.orsay.lri.varna.models.rna.ModeleBP
 
_edge3 - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_edge3 - Variable in class fr.orsay.lri.varna.views.VueBPType
 
_edge5 - Variable in class fr.orsay.lri.varna.models.rna.ModeleBP
 
_edge5 - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_edge5 - Variable in class fr.orsay.lri.varna.views.VueBPType
 
_elementStructure - Variable in class fr.orsay.lri.varna.models.rna.ModeleBase
The structure information associated with this InterfaceBase.
_end1 - Variable in class fr.orsay.lri.varna.models.naView.Region
 
_end2 - Variable in class fr.orsay.lri.varna.models.naView.Region
 
_epsFilter - Variable in class fr.orsay.lri.varna.views.VueUI
 
_error - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_errorsOn - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_fileChooserDirectory - Variable in class fr.orsay.lri.varna.views.VueUI
 
_fillBase - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_fillColor - Variable in class fr.orsay.lri.varna.models.annotations.HighlightRegionAnnotation
 
_firstFocus - Variable in class fr.orsay.lri.varna.components.VARNAConsole
 
_firstModel - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_firstSequence - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_firstStructure - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_flatExteriorLoop - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_flatExteriorLoop - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_font - Variable in class fr.orsay.lri.varna.models.annotations.TextAnnotation
 
_font - Variable in class fr.orsay.lri.varna.models.export.FontCommand
 
_font - Variable in class fr.orsay.lri.varna.models.export.SecStrDrawingProducer
 
_font - Variable in class fr.orsay.lri.varna.models.export.XFIGExport
 
_fontBasesGeneral - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_fontsize - Variable in class fr.orsay.lri.varna.models.export.SecStrDrawingProducer
 
_fontsize - Variable in class fr.orsay.lri.varna.models.export.SVGExport
 
_fromSlider - Variable in class fr.orsay.lri.varna.views.VueHighlightRegionEdit
 
_g2d - Variable in class fr.orsay.lri.varna.models.export.SwingGraphics
 
_gapsColor - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_gp - Variable in class fr.orsay.lri.varna.views.VueColorMapStyle
 
_h - Variable in class fr.orsay.lri.varna.models.naView.NAView
 
_h - Variable in class fr.orsay.lri.varna.models.VARNAEdits.HelixFlipEdit
 
_h - Variable in class fr.orsay.lri.varna.models.VARNAEdits.HelixRotateEdit
 
_helices - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_helixID - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_highlightAnnotation - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_highlightRegion - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_horsCadre - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_hoverColor - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_hoveredBase - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_i - Variable in class fr.orsay.lri.varna.models.VARNAEdits.AddBPEdit
 
_i - Variable in class fr.orsay.lri.varna.models.VARNAEdits.RemoveBPEdit
 
_id - Variable in enum fr.orsay.lri.varna.models.rna.ModeleColorMap.NamedColorMapTypes
 
_id - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateElement
 
_id3 - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_id5 - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_inBondOrientation - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_inBP - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_inBP3 - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_inBP5 - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_index - Variable in class fr.orsay.lri.varna.models.rna.ModeleBaseNucleotide
 
_index - Variable in class fr.orsay.lri.varna.models.rna.ModeleBasesComparison
This base's offset in the sequence
_index - Variable in class fr.orsay.lri.varna.models.VARNAEdits.SingleBaseMoveEdit
 
_indices - Variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw.HelixEmbedding
 
_indices - Variable in class fr.orsay.lri.varna.models.VARNAEdits.BasesShiftEdit
 
_inEdge3 - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_inEdge5 - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_inHelix - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_inLength - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_inPosition - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_input - Variable in class fr.orsay.lri.varna.components.VARNAConsole
 
_inSequence - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_inSequenceIDs - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_inStrAnnotation - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_intensity - Variable in class fr.orsay.lri.varna.models.annotations.ChemProbAnnotation
 
_interpolator - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_invMapping - Variable in class fr.orsay.lri.varna.models.rna.Mapping
 
_isCustomColored - Variable in class fr.orsay.lri.varna.models.rna.ModeleBPStyle
 
_isNull - Variable in class fr.orsay.lri.varna.models.naView.Connection
 
_itemFlatExteriorLoop - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_itemOptionBondsColored - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_itemOptionGapsBaseColored - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_itemOptionSpecialBaseColored - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_itemShowColorMap - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_itemShowNCBP - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_itemShowOnlyPlanar - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_itemShowWarnings - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_j - Variable in class fr.orsay.lri.varna.models.VARNAEdits.AddBPEdit
 
_j - Variable in class fr.orsay.lri.varna.models.VARNAEdits.RemoveBPEdit
 
_jpgFilter - Variable in class fr.orsay.lri.varna.views.VueUI
 
_lastSelectedCoord - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_len - Variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw.PairedPortion
 
_len - Variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw.UnpairedPortion
 
_length - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_linkDestination - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_linkOrigin - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_listeAnnotations - Variable in class fr.orsay.lri.varna.models.rna.RNA
 
_listeBases - Variable in class fr.orsay.lri.varna.models.rna.RNA
the base list
_listeBasesM - Variable in class fr.orsay.lri.varna.models.rna.Motif
 
_listeRegionHighlights - Variable in class fr.orsay.lri.varna.models.rna.RNA
 
_listeVARNAListener - Variable in class fr.orsay.lri.varna.models.naView.NAView
 
_listeVARNAListener - Variable in class fr.orsay.lri.varna.models.rna.RNA
 
_listStrands - Variable in class fr.orsay.lri.varna.models.rna.Motif
 
_listStrands - Variable in class fr.orsay.lri.varna.models.rna.RNA
the strand list
_mainBPStyle - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_mainSurface - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_manager - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_map - Variable in class fr.orsay.lri.varna.models.rna.ModeleColorMap
 
_mapping - Variable in class fr.orsay.lri.varna.models.rna.Mapping
 
_mbfst - Variable in class fr.orsay.lri.varna.models.annotations.ChemProbAnnotation
 
_mbsnd - Variable in class fr.orsay.lri.varna.models.annotations.ChemProbAnnotation
 
_mcm - Variable in class fr.orsay.lri.varna.components.GradientEditorPanel
 
_ml - Variable in class fr.orsay.lri.varna.models.VARNAEdits.HelixRotateEdit
 
_mode - Variable in class fr.orsay.lri.varna.views.VueBases
 
_modifiable - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_modifiable - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_msbp - Variable in class fr.orsay.lri.varna.models.VARNAEdits.AddBPEdit
 
_msbp - Variable in class fr.orsay.lri.varna.models.VARNAEdits.RemoveBPEdit
 
_msbp - Variable in class fr.orsay.lri.varna.views.VueBPThickness
 
_msbp - Variable in class fr.orsay.lri.varna.views.VueBPType
 
_name - Variable in class fr.orsay.lri.varna.models.rna.RNA
 
_name - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateHelix
 
_name - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateUnpairedSequence
 
_nearestBase - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_newFlat - Variable in class fr.orsay.lri.varna.models.VARNAEdits.RedrawEdit
 
_newMode - Variable in class fr.orsay.lri.varna.models.VARNAEdits.RedrawEdit
 
_nextColCode - Variable in class fr.orsay.lri.varna.models.export.XFIGExport
 
_nonStandardColor - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_normalBases - Static variable in class fr.orsay.lri.varna.models.rna.RNA
 
_numbersFont - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_numColumns - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_numPairedPortions - Variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw.RNATree
 
_numPeriod - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_numRows - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_numStrand - Variable in class fr.orsay.lri.varna.models.rna.ModeleBase
Numero du brin auquel la base appartient.
_nx - Variable in class fr.orsay.lri.varna.models.VARNAEdits.SingleBaseMoveEdit
 
_ny - Variable in class fr.orsay.lri.varna.models.VARNAEdits.SingleBaseMoveEdit
 
_offsetPanel - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_offsetRNA - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_offX - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_offY - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_optionProducer - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_orientation - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_orientation - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_orig - Variable in class fr.orsay.lri.varna.models.export.LineCommand
 
_orig - Variable in class fr.orsay.lri.varna.models.export.RectangleCommand
 
_out - Variable in class fr.orsay.lri.varna.models.annotations.ChemProbAnnotation
 
_outlineColor - Variable in class fr.orsay.lri.varna.models.annotations.HighlightRegionAnnotation
 
_output - Variable in class fr.orsay.lri.varna.components.VARNAConsole
 
_over - Variable in class fr.orsay.lri.varna.views.VueAboutPanel.AboutAnimator
 
_ox - Variable in class fr.orsay.lri.varna.models.VARNAEdits.SingleBaseMoveEdit
 
_oy - Variable in class fr.orsay.lri.varna.models.VARNAEdits.SingleBaseMoveEdit
 
_p - Variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw.HelixEmbedding
 
_parent - Variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw.HelixEmbedding
 
_partner3 - Variable in class fr.orsay.lri.varna.models.rna.ModeleBP
 
_partner5 - Variable in class fr.orsay.lri.varna.models.rna.ModeleBP
 
_period - Variable in class fr.orsay.lri.varna.views.VueAboutPanel.AboutAnimator
 
_periodResNum - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_plainStroke - Variable in class fr.orsay.lri.varna.models.export.SwingGraphics
 
_pLimL - Variable in class fr.orsay.lri.varna.models.VARNAEdits.HelixRotateEdit
 
_pLimR - Variable in class fr.orsay.lri.varna.models.VARNAEdits.HelixRotateEdit
 
_pngFilter - Variable in class fr.orsay.lri.varna.views.VueUI
 
_points - Variable in class fr.orsay.lri.varna.models.export.FillPolygonCommand
 
_points - Variable in class fr.orsay.lri.varna.models.export.PolygonCommand
 
_popup - Variable in class fr.orsay.lri.varna.VARNAPanel
If comparison mode is TRUE (ON), then the application will be used to display a super-structure resulting on an RNA secondary structure comparison.
_portions - Variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw.RNATree
 
_pos - Variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw.UnpairedPortion
 
_pos1 - Variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw.PairedPortion
 
_pos2 - Variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw.PairedPortion
 
_premierAffichage - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_prevFlat - Variable in class fr.orsay.lri.varna.models.VARNAEdits.RedrawEdit
 
_prevMode - Variable in class fr.orsay.lri.varna.models.VARNAEdits.RedrawEdit
 
_quitButton - Variable in class fr.orsay.lri.varna.components.VARNAConsole
 
_quitPanel - Variable in class fr.orsay.lri.varna.components.VARNAConsole
 
_r - Variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw.HelixEmbedding
 
_r - Variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw.PairedPortion
 
_radius - Variable in class fr.orsay.lri.varna.models.annotations.HighlightRegionAnnotation
 
_radius - Variable in class fr.orsay.lri.varna.models.export.CircleCommand
 
_radius - Variable in class fr.orsay.lri.varna.models.export.FillCircleCommand
 
_realCenters - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_realCoords - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_realIndex - Variable in class fr.orsay.lri.varna.models.rna.ModeleBase
 
_rna - Variable in class fr.orsay.lri.varna.models.rna.Motif
 
_RNA - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_RNAListeners - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_rnd - Static variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw
 
_rotation - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_rotation - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_scale - Variable in class fr.orsay.lri.varna.models.export.SecStrDrawingProducer
 
_scaleFactor - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_scrolls - Variable in class fr.orsay.lri.varna.components.VARNAConsole
 
_secondSequence - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_secondStructure - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_selected - Variable in class fr.orsay.lri.varna.models.rna.ModeleStyleBase
 
_selectedAnnotation - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_selectedBases - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_selectedIndex - Variable in class fr.orsay.lri.varna.components.GradientEditorPanel
 
_selectionListeners - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_selectionMenuIndex - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_selectionRectangle - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_sequence - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_sequenceIDs - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_sequences - Variable in class fr.orsay.lri.varna.views.VueAboutPanel.AboutAnimator
 
_showWarnings - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_size - Variable in class fr.orsay.lri.varna.models.export.FontCommand
 
_spaceBetweenBases - Variable in class fr.orsay.lri.varna.models.rna.Motif
 
_spaceBetweenBases - Variable in class fr.orsay.lri.varna.models.rna.RNA
 
_spawnOrigin - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_specialBasesColor - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_ss - Variable in class fr.orsay.lri.varna.models.export.SecStrProducerGraphics
 
_sseq - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_sstruct - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_start1 - Variable in class fr.orsay.lri.varna.models.naView.Region
 
_start2 - Variable in class fr.orsay.lri.varna.models.naView.Region
 
_stericity - Variable in class fr.orsay.lri.varna.models.rna.ModeleBP
 
_stericity - Variable in class fr.orsay.lri.varna.views.VueBPType
 
_strand - Variable in class fr.orsay.lri.varna.models.rna.ModeleStrand
 
_strandEndsAnnotated - Variable in class fr.orsay.lri.varna.models.rna.RNA
 
_struct - Variable in class fr.orsay.lri.varna.models.rna.StructureTemp
 
_structure - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
_structureAux - Variable in class fr.orsay.lri.varna.models.rna.RNA
Additional bonds and info can be specified here.
_structures - Variable in class fr.orsay.lri.varna.views.VueAboutPanel.AboutAnimator
 
_style - Variable in class fr.orsay.lri.varna.models.rna.ModeleBP
 
_styleBase - Variable in class fr.orsay.lri.varna.models.rna.ModeleBase
The base style.
_subMenuBases - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_subscripts - Static variable in class fr.orsay.lri.varna.models.rna.ModeleBaseNucleotide
 
_superscripts - Static variable in class fr.orsay.lri.varna.models.rna.ModeleBaseNucleotide
 
_support - Variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw.HelixEmbedding
 
_svgFilter - Variable in class fr.orsay.lri.varna.views.VueUI
 
_textArea - Variable in class fr.orsay.lri.varna.views.VueAboutPanel
 
_texte - Variable in class fr.orsay.lri.varna.models.annotations.TextAnnotation
 
_textPanel - Variable in class fr.orsay.lri.varna.views.VueAboutPanel
 
_thickness - Variable in class fr.orsay.lri.varna.models.export.CircleCommand
 
_thickness - Variable in class fr.orsay.lri.varna.models.export.FillCircleCommand
 
_thickness - Variable in class fr.orsay.lri.varna.models.export.LineCommand
 
_thickness - Variable in class fr.orsay.lri.varna.models.export.PolygonCommand
 
_thickness - Variable in class fr.orsay.lri.varna.models.export.RectangleCommand
 
_thickness - Variable in class fr.orsay.lri.varna.models.export.SecStrProducerGraphics
 
_thickness - Variable in class fr.orsay.lri.varna.models.export.SVGExport
 
_thickness - Variable in class fr.orsay.lri.varna.models.rna.ModeleBPStyle
 
_thicknessSlider - Variable in class fr.orsay.lri.varna.views.VueBPThickness
 
_title - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_title - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_titleColor - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_titleColor - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_titleFont - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_titleHeight - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_titleSize - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_tm - Variable in class fr.orsay.lri.varna.views.VueBaseValues
 
_tm - Variable in class fr.orsay.lri.varna.views.VueBPList
 
_toSlider - Variable in class fr.orsay.lri.varna.views.VueHighlightRegionEdit
 
_translation - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_txt - Variable in class fr.orsay.lri.varna.models.export.TextCommand
 
_type - Variable in class fr.orsay.lri.varna.models.annotations.ChemProbAnnotation
 
_typeAncrage - Variable in class fr.orsay.lri.varna.models.annotations.TextAnnotation
 
_UI - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_undoableEditSupport - Variable in class fr.orsay.lri.varna.views.VueUI
 
_URL - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_useBaseColorsForBPs - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_useBaseNameColor - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_useBaseNumbersColor - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_useBaseOutlineColor - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_useGapsColor - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_useInnerBaseColor - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_useNonStandardColor - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_value - Variable in class fr.orsay.lri.varna.models.rna.ModeleBase
 
_values - Variable in class fr.orsay.lri.varna.models.rna.ModeleColorMap
 
_varnaFilter - Variable in class fr.orsay.lri.varna.views.VueUI
 
_VARNAListeners - Variable in class fr.orsay.lri.varna.VARNAPanel
 
_VARNAPanelList - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_vp - Variable in class fr.orsay.lri.varna.components.VARNAConsole
 
_vp - Static variable in class fr.orsay.lri.varna.models.rna.VARNASecDraw
 
_vp - Variable in class fr.orsay.lri.varna.models.VARNAEdits.AddBPEdit
 
_vp - Variable in class fr.orsay.lri.varna.models.VARNAEdits.BasesShiftEdit
 
_vp - Variable in class fr.orsay.lri.varna.models.VARNAEdits.HelixFlipEdit
 
_vp - Variable in class fr.orsay.lri.varna.models.VARNAEdits.HelixRotateEdit
 
_vp - Variable in class fr.orsay.lri.varna.models.VARNAEdits.RedrawEdit
 
_vp - Variable in class fr.orsay.lri.varna.models.VARNAEdits.RemoveBPEdit
 
_vp - Variable in class fr.orsay.lri.varna.models.VARNAEdits.RotateRNAEdit
 
_vp - Variable in class fr.orsay.lri.varna.models.VARNAEdits.SingleBaseMoveEdit
 
_vp - Variable in class fr.orsay.lri.varna.views.VueAboutPanel.AboutAnimator
 
_vp - Variable in class fr.orsay.lri.varna.views.VueAnnotation
 
_vp - Variable in class fr.orsay.lri.varna.views.VueBases
 
_vp - Variable in class fr.orsay.lri.varna.views.VueBaseValues
 
_vp - Variable in class fr.orsay.lri.varna.views.VueBorder
 
_vp - Variable in class fr.orsay.lri.varna.views.VueBPHeightIncrement
 
_vp - Variable in class fr.orsay.lri.varna.views.VueBPList
 
_vp - Variable in class fr.orsay.lri.varna.views.VueBPThickness
 
_vp - Variable in class fr.orsay.lri.varna.views.VueBPType
 
_vp - Variable in class fr.orsay.lri.varna.views.VueChemProbAnnotation
 
_vp - Variable in class fr.orsay.lri.varna.views.VueColorMapStyle
 
_vp - Variable in class fr.orsay.lri.varna.views.VueFont
 
_vp - Variable in class fr.orsay.lri.varna.views.VueGlobalRotation
 
_vp - Variable in class fr.orsay.lri.varna.views.VueHighlightRegionEdit
 
_vp - Variable in class fr.orsay.lri.varna.views.VueListeAnnotations
 
_vp - Variable in class fr.orsay.lri.varna.views.VueLoadColorMapValues
 
_vp - Variable in class fr.orsay.lri.varna.views.VueManualInput
 
_vp - Variable in class fr.orsay.lri.varna.views.VueMenu
 
_vp - Variable in class fr.orsay.lri.varna.views.VueNumPeriod
 
_vp - Variable in class fr.orsay.lri.varna.views.VueSpaceBetweenBases
 
_vp - Variable in class fr.orsay.lri.varna.views.VueStyleBP
 
_vp - Variable in class fr.orsay.lri.varna.views.VueUI
 
_vp - Variable in class fr.orsay.lri.varna.views.VueZoom
 
_vueBases - Variable in class fr.orsay.lri.varna.components.BaseSpecialColorEditor
 
_warning - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_xfigFilter - Variable in class fr.orsay.lri.varna.views.VueUI
 
_xmax - Variable in class fr.orsay.lri.varna.models.export.SecStrDrawingProducer
 
_xmin - Variable in class fr.orsay.lri.varna.models.export.SecStrDrawingProducer
 
_ymax - Variable in class fr.orsay.lri.varna.models.export.SecStrDrawingProducer
 
_ymin - Variable in class fr.orsay.lri.varna.models.export.SecStrDrawingProducer
 
_zoom - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_zoom - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
_zoomAmount - Variable in class fr.orsay.lri.varna.models.VARNAConfig
 
_zoomAmount - Variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 

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