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Packages that use AlignedNode | |
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fr.orsay.lri.varna.models.treealign |
Uses of AlignedNode in fr.orsay.lri.varna.models.treealign |
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Fields in fr.orsay.lri.varna.models.treealign with type parameters of type AlignedNode | |
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private Tree<AlignedNode<ValueType1,ValueType2>> |
TreeAlignResult.alignment
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Methods in fr.orsay.lri.varna.models.treealign that return types with arguments of type AlignedNode | |
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Tree<AlignedNode<ValueType1,ValueType2>> |
TreeAlign.Aligner.computeAlignment()
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private List<Tree<AlignedNode<ValueType1,ValueType2>>> |
TreeAlign.Aligner.computeForestAlignment(int i,
int s,
int p,
int j,
int t,
int q)
Align F1[i_s,i_p] with F2[j_t,j_q]. |
private Tree<AlignedNode<ValueType1,ValueType2>> |
TreeAlign.Aligner.computeTreeAlignment(int i,
int j)
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Tree<AlignedNode<ValueType1,ValueType2>> |
TreeAlignResult.getAlignment()
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private Tree<AlignedNode<ValueType1,ValueType2>> |
TreeAlign.Aligner.treeDeleted(int i)
Align T1[i] with the empty tree. |
private Tree<AlignedNode<ValueType1,ValueType2>> |
TreeAlign.Aligner.treeInserted(int j)
Align the empty tree with T2[j]. |
Method parameters in fr.orsay.lri.varna.models.treealign with type arguments of type AlignedNode | |
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Mapping |
RNATree2.ConvertToMapping.convert(Tree<AlignedNode<RNANodeValue2,RNANodeValue2>> tree)
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Mapping |
RNATree.ConvertToMapping.convert(Tree<AlignedNode<RNANodeValue,RNANodeValue>> tree)
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private void |
RNATree2.ConvertToMapping.convertSubTree(Tree<AlignedNode<RNANodeValue2,RNANodeValue2>> tree)
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private void |
RNATree.ConvertToMapping.convertSubTree(Tree<AlignedNode<RNANodeValue,RNANodeValue>> tree)
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float |
TreeAlign.distanceFromAlignment(Tree<AlignedNode<ValueType1,ValueType2>> alignment)
Takes a alignment, and compute the distance between the two original trees. |
static Mapping |
RNATree2.mappingFromAlignment(Tree<AlignedNode<RNANodeValue2,RNANodeValue2>> alignment)
Convert an RNA tree (with RNANodeValue2) alignment into a Mapping. |
static Mapping |
RNATree.mappingFromAlignment(Tree<AlignedNode<RNANodeValue,RNANodeValue>> alignment)
Convert an RNA tree alignment into a Mapping. |
void |
TreeAlignResult.setAlignment(Tree<AlignedNode<ValueType1,ValueType2>> alignment)
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