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Packages that use RNANodeValueTemplate | |
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fr.orsay.lri.varna.models.rna | |
fr.orsay.lri.varna.models.templates |
Uses of RNANodeValueTemplate in fr.orsay.lri.varna.models.rna |
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Method parameters in fr.orsay.lri.varna.models.rna with type arguments of type RNANodeValueTemplate | |
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private void |
RNA.computeHelixTranslations(Tree<RNANodeValueTemplate> tree,
Map<RNATemplate.RNATemplateHelix,Point2D.Double> translateVectors,
RNATemplateMapping mapping,
Point2D.Double parentDeltaVector)
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private Map<RNATemplate.RNATemplateHelix,Point2D.Double> |
RNA.computeHelixTranslations(Tree<RNANodeValueTemplate> tree,
RNATemplateMapping mapping)
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Uses of RNANodeValueTemplate in fr.orsay.lri.varna.models.templates |
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Subclasses of RNANodeValueTemplate in fr.orsay.lri.varna.models.templates | |
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class |
RNANodeValueTemplateBasePair
See RNANodeValueTemplate. |
class |
RNANodeValueTemplateBrokenBasePair
See RNANodeValueTemplate. |
class |
RNANodeValueTemplateSequence
See RNANodeValueTemplate. |
Methods in fr.orsay.lri.varna.models.templates that return types with arguments of type RNANodeValueTemplate | |
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static TreeAlignResult<RNANodeValue2,RNANodeValueTemplate> |
RNATemplateAlign.alignRNAWithTemplate(RNA rna,
RNATemplate template)
Align the given RNA with the given RNA template. |
Tree<RNANodeValueTemplate> |
RNATemplate.ConvertToTree.convert()
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Tree<RNANodeValueTemplate> |
RNATemplate.toTree()
Make a tree of the template. |
Methods in fr.orsay.lri.varna.models.templates with parameters of type RNANodeValueTemplate | |
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double |
RNANodeValue2TemplateDistance.f(RNANodeValue2 v1,
RNANodeValueTemplate v2)
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double |
RNANodeValue2TemplateDistance.insert(RNANodeValueTemplate v)
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Method parameters in fr.orsay.lri.varna.models.templates with type arguments of type RNANodeValueTemplate | |
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private void |
RNATemplate.ConvertToTree.makeChildren(Tree<RNANodeValueTemplate> father)
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static RNATemplateMapping |
RNATemplateAlign.makeTemplateMapping(TreeAlignResult<RNANodeValue2,RNANodeValueTemplate> alignResult,
RNA rna)
This method takes an alignment between a tree of RNANodeValue2 of RNANodeValue and a tree of RNANodeValue2 of RNANodeValueTemplate, and the original RNA object that was used to create the first tree in the alignment. |
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