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L
l
- Variable in class fr.orsay.lri.varna.views.
VueLoadColorMapValues
labelDist
- Variable in class fr.orsay.lri.varna.models.treealign.
TreeAlign
The distance function between labels.
leftBasePosition
- Variable in class fr.orsay.lri.varna.models.treealign.
RNANodeValue
leftNode
- Variable in class fr.orsay.lri.varna.models.treealign.
AlignedNode
leftNucleotide
- Variable in class fr.orsay.lri.varna.models.treealign.
RNANodeValue
lencut
- Variable in class fr.orsay.lri.varna.models.naView.
NAView
length
- Variable in class fr.orsay.lri.varna.models.rna.
RNAMLParser.HelixTemp
length
- Variable in class fr.orsay.lri.varna.models.templates.
RNATemplate.RNATemplateHelix
Number of base pairs in the helix.
length
- Variable in class fr.orsay.lri.varna.models.templates.
RNATemplate.RNATemplateUnpairedSequence
Number of (non-paired) bases.
lengths
- Variable in class fr.orsay.lri.varna.models.
CubicBezierCurve
Array of length n.
LEONTIS_WESTHOF_BP_STYLE
- Static variable in class fr.orsay.lri.varna.models.
VARNAConfigLoader
levelPosition
- Variable in class fr.orsay.lri.varna.models.rna.
ModeleStrand
limited
- Variable in class fr.orsay.lri.varna.views.
VueAnnotation
LineCommand
- Class in
fr.orsay.lri.varna.models.export
LineCommand(Point2D.Double, Point2D.Double, double)
- Constructor for class fr.orsay.lri.varna.models.export.
LineCommand
lineLength(Point2D.Double, Point2D.Double)
- Method in class fr.orsay.lri.varna.models.
CubicBezierCurve
list
- Variable in class fr.orsay.lri.varna.models.templates.
RNATemplate.MakeEdgeList
listBasePair()
- Method in class fr.orsay.lri.varna.models.rna.
Motif
Create an arrayList which contain all bases which are involved in a base pair.
listStrand()
- Method in class fr.orsay.lri.varna.models.rna.
Motif
Find all the strands and store them in an arrayList.
load()
- Method in class fr.orsay.lri.varna.models.templates.
RNATemplate.LoadFromXml
load
- Variable in class fr.orsay.lri.varna.views.
VueLoadColorMapValues
loadFile(String)
- Method in class fr.orsay.lri.varna.
VARNAPanel
loadFile(String, boolean)
- Method in class fr.orsay.lri.varna.
VARNAPanel
loadPath(JFileChooser)
- Method in class fr.orsay.lri.varna.views.
VueUI
loadSecStr(Reader)
- Method in class fr.orsay.lri.varna.models.rna.
RNA
loadSecStr(Reader, int)
- Method in class fr.orsay.lri.varna.models.rna.
RNA
loadSecStr(String)
- Method in class fr.orsay.lri.varna.models.rna.
RNA
loadSecStrBPSEQ(Reader)
- Method in class fr.orsay.lri.varna.models.rna.
RNA
loadSecStrCT(Reader)
- Method in class fr.orsay.lri.varna.models.rna.
RNA
loadSecStrDBN(Reader)
- Method in class fr.orsay.lri.varna.models.rna.
RNA
loadSecStrRNAML(Reader)
- Method in class fr.orsay.lri.varna.models.rna.
RNA
loadSession(String)
- Method in class fr.orsay.lri.varna.
VARNAPanel
localObjectFlavor
- Static variable in class fr.orsay.lri.varna.components.
ReorderableJList
locateOrAddList(String)
- Method in class fr.orsay.lri.varna.views.
VueBases
locateSelectedIndex(int, int)
- Method in class fr.orsay.lri.varna.components.
GradientEditorPanel
lockScrolling()
- Method in class fr.orsay.lri.varna.
VARNAPanel
logicToPanel(Point2D.Double)
- Method in class fr.orsay.lri.varna.
VARNAPanel
LOOP
- Static variable in class fr.orsay.lri.varna.models.annotations.
TextAnnotation
if the annoted text is fixed to a loop;
loop
- Variable in class fr.orsay.lri.varna.models.naView.
Connection
Loop
- Class in
fr.orsay.lri.varna.models.naView
Loop()
- Constructor for class fr.orsay.lri.varna.models.naView.
Loop
loop_count
- Variable in class fr.orsay.lri.varna.models.naView.
NAView
LOOP_DISTANCE
- Static variable in class fr.orsay.lri.varna.models.rna.
RNA
loopnumber
- Variable in class fr.orsay.lri.varna.models.naView.
Radloop
loops
- Variable in class fr.orsay.lri.varna.models.naView.
NAView
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