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Packages that use fr.orsay.lri.varna.models.treealign | |
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fr.orsay.lri.varna.models.rna | |
fr.orsay.lri.varna.models.templates | |
fr.orsay.lri.varna.models.treealign |
Classes in fr.orsay.lri.varna.models.treealign used by fr.orsay.lri.varna.models.rna | |
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Tree
An object of this class is a rooted tree, where children are ordered. |
Classes in fr.orsay.lri.varna.models.treealign used by fr.orsay.lri.varna.models.templates | |
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GraphvizDrawableNodeValue
A tree can be displayed using graphviz (using class TreeGraphviz) if the node values in the tree implement this interface. |
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RNANodeValue2
In this model, nodes are either: 1. |
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Tree
An object of this class is a rooted tree, where children are ordered. |
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TreeAlignLabelDistanceAsymmetric
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TreeAlignResult
The result of aligning a tree T1 with a tree T2. |
Classes in fr.orsay.lri.varna.models.treealign used by fr.orsay.lri.varna.models.treealign | |
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AlignedNode
The type of node values in an alignment. |
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ExampleDistance3
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ExampleDistance3.SequenceAlignResult
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GraphvizDrawableNodeValue
A tree can be displayed using graphviz (using class TreeGraphviz) if the node values in the tree implement this interface. |
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RNANodeValue
We use the following convention: If the node is marked by a couple (n,m) these integers are stored in leftBasePosition and rightBasePosition (ie. |
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RNANodeValue.Origin
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RNANodeValue2
In this model, nodes are either: 1. |
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RNATree2Exception
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Tree
An object of this class is a rooted tree, where children are ordered. |
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TreeAlign.TreeData
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TreeAlignException
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TreeAlignLabelDistanceAsymmetric
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TreeAlignLabelDistanceSymmetric
Same as TreeAlignLabelDistanceAsymmetric, but elements on both trees are of the same type, and the function is symmetric, ie. |
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TreeAlignResult
The result of aligning a tree T1 with a tree T2. |
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