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O

object - Variable in class fr.orsay.lri.varna.components.ReorderableJList.RJLTransferable
 
objFun(int, int, double, double, double) - Static method in class fr.orsay.lri.varna.models.rna.RNA
 
onHoverChanged(ModeleBase, ModeleBase) - Method in interface fr.orsay.lri.varna.interfaces.InterfaceVARNASelectionListener
Specifies an action that should be performed upon changing the hovered base.
onLayoutChanged(Hashtable<Integer, Point2D.Double>) - Method in interface fr.orsay.lri.varna.interfaces.InterfaceVARNARNAListener
Reacts to displacement of
onSelectionChanged(BaseList, BaseList, BaseList) - Method in interface fr.orsay.lri.varna.interfaces.InterfaceVARNASelectionListener
Specifies the action to be performed upon changing the selection.
onSequenceChanged(int, String, String) - Method in interface fr.orsay.lri.varna.interfaces.InterfaceVARNARNAListener
Reacts to changes being made at the sequence level.
onStructureChanged(Set<ModeleBP>, Set<ModeleBP>, Set<ModeleBP>) - Method in interface fr.orsay.lri.varna.interfaces.InterfaceVARNARNAListener
Reacts to modification of the structure (Base-pair addition/removal).
onStructureRedrawn() - Method in interface fr.orsay.lri.varna.interfaces.InterfaceVARNAListener
 
onUINewStructure(VARNAConfig, RNA) - Method in interface fr.orsay.lri.varna.interfaces.InterfaceVARNAListener
 
onWarningEmitted(String) - Method in interface fr.orsay.lri.varna.interfaces.InterfaceVARNAListener
 
orderStrands(int) - Method in class fr.orsay.lri.varna.models.rna.Motif
 
orientation - Variable in class fr.orsay.lri.varna.models.rna.RNAMLParser.BPTemp
 
orientationOpt - Static variable in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
origin - Variable in class fr.orsay.lri.varna.models.treealign.RNANodeValue
Used to store the origin of this base / base pair.
origine - Variable in class fr.orsay.lri.varna.models.export.ArcCommand
 
otherEndPoint - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateElement.EdgeEndPoint
 
out - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateUnpairedSequence
The helixes connected on both sides.
out1 - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateHelix
If we go through all bases of the RNA from first to last, we will pass twice through this helix.
out2 - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateHelix
If we go through all bases of the RNA from first to last, we will pass twice through this helix.
outlineColor - Variable in class fr.orsay.lri.varna.components.BaseTableModel
 
outlineShow - Variable in class fr.orsay.lri.varna.views.VueHighlightRegionEdit
 
outTangentVectorAngle - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateUnpairedSequence
The sequence is drawn along a cubic Bezier curve.
outTangentVectorLength - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateUnpairedSequence
The sequence is drawn along a cubic Bezier curve.
outward - Variable in class fr.orsay.lri.varna.views.VueChemProbAnnotation
 

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