A B C D E F G H I K L M N O P Q R S T U V W X Y Z _

I

i - Variable in class fr.orsay.lri.varna.models.treealign.RNATree.ConvertToTree
 
importSession(String) - Static method in class fr.orsay.lri.varna.VARNAPanel
 
importSession(InputStream, String) - Static method in class fr.orsay.lri.varna.VARNAPanel
 
imprimer() - Method in class fr.orsay.lri.varna.VARNAPanel
 
Imprimer - Class in fr.orsay.lri.varna.views
 
Imprimer(String) - Constructor for class fr.orsay.lri.varna.views.Imprimer
 
in - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateUnpairedSequence
The helixes connected on both sides.
in1 - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateHelix
If we go through all bases of the RNA from first to last, we will pass twice through this helix.
in1Is - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateHelix
For an helix, tells us whether IN1/OUT1 is the 5' strand (the first strand we meet if we follow the RNA sequence) or the 3' strand (the second we meet if we follow the RNA sequence).
in2 - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateHelix
If we go through all bases of the RNA from first to last, we will pass twice through this helix.
infoBasesExtracted() - Method in class fr.orsay.lri.varna.models.naView.NAView
 
infoBasesMate() - Method in class fr.orsay.lri.varna.models.naView.NAView
 
infoRegions() - Method in class fr.orsay.lri.varna.models.naView.NAView
 
infoRoot() - Method in class fr.orsay.lri.varna.models.naView.NAView
 
infoStructure(ArrayList<Integer>) - Method in class fr.orsay.lri.varna.models.naView.NAView
 
init() - Method in class fr.orsay.lri.varna.components.VARNAConsole
 
init() - Method in class fr.orsay.lri.varna.models.rna.RNA
 
init() - Method in class fr.orsay.lri.varna.VARNAPanel
 
init() - Method in class fr.orsay.lri.varna.views.VueAboutPanel
 
init() - Method in class fr.orsay.lri.varna.views.VueBaseValues
 
init() - Method in class fr.orsay.lri.varna.views.VueBPList
 
init() - Method in class fr.orsay.lri.varna.views.VueColorMapStyle
 
init() - Method in class fr.orsay.lri.varna.views.VueFont
 
init() - Method in class fr.orsay.lri.varna.views.VueLoadColorMapValues
 
initArrays() - Method in class fr.orsay.lri.varna.models.templates.RNATemplate.RemovePseudoKnots
 
initChecker(ModeleStrand) - Method in class fr.orsay.lri.varna.models.rna.Motif
 
initCheckerAll() - Method in class fr.orsay.lri.varna.models.rna.Motif
 
initInterv() - Method in class fr.orsay.lri.varna.models.rna.Motif
 
initStrand() - Method in class fr.orsay.lri.varna.models.rna.Motif
 
initValues() - Method in class fr.orsay.lri.varna.models.VARNAConfigLoader
 
innerColor - Variable in class fr.orsay.lri.varna.components.BaseTableModel
 
input - Variable in class fr.orsay.lri.varna.views.VueLoadColorMapValues
 
insert(RNANodeValueTemplate) - Method in class fr.orsay.lri.varna.models.templates.RNANodeValue2TemplateDistance
 
inTangentVectorAngle - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateUnpairedSequence
The sequence is drawn along a cubic Bezier curve.
inTangentVectorLength - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateUnpairedSequence
The sequence is drawn along a cubic Bezier curve.
intArrayFromList(List<Integer>) - Static method in class fr.orsay.lri.varna.models.templates.RNATemplateAlign
Convert a list of integers into an array of integers.
intensity - Variable in class fr.orsay.lri.varna.views.VueChemProbAnnotation
 
InterfaceParameterLoader - Interface in fr.orsay.lri.varna.interfaces
 
InterfaceVARNAListener - Interface in fr.orsay.lri.varna.interfaces
Observable design pattern
InterfaceVARNAObservable - Class in fr.orsay.lri.varna.interfaces
Observable design pattern
InterfaceVARNAObservable() - Constructor for class fr.orsay.lri.varna.interfaces.InterfaceVARNAObservable
 
InterfaceVARNARNAListener - Interface in fr.orsay.lri.varna.interfaces
 
InterfaceVARNASelectionListener - Interface in fr.orsay.lri.varna.interfaces
 
intervDroite - Variable in class fr.orsay.lri.varna.models.rna.ExtendedMB
 
intervDroite - Variable in class fr.orsay.lri.varna.models.rna.ModeleBase
 
intervGauche - Variable in class fr.orsay.lri.varna.models.rna.ExtendedMB
 
intervGauche - Variable in class fr.orsay.lri.varna.models.rna.ModeleBase
 
invmap - Variable in class fr.orsay.lri.varna.models.templates.RNATemplateMapping
 
isAutoCentered() - Method in class fr.orsay.lri.varna.VARNAPanel
Returns the current state of auto centering mode.
isBent() - Method in class fr.orsay.lri.varna.models.rna.ModeleBPStyle
 
isBordered - Variable in class fr.orsay.lri.varna.components.ColorRenderer
 
isBroken() - Method in class fr.orsay.lri.varna.models.naView.Connection
 
isCanonical() - Method in class fr.orsay.lri.varna.models.rna.ModeleBP
 
isCanonicalAU() - Method in class fr.orsay.lri.varna.models.rna.ModeleBP
 
isCanonicalGC() - Method in class fr.orsay.lri.varna.models.rna.ModeleBP
 
isCellEditable(EventObject) - Method in class fr.orsay.lri.varna.components.ActionEditor
 
isCellEditable(int, int) - Method in class fr.orsay.lri.varna.components.AnnotationTableModel
 
isCellEditable(int, int) - Method in class fr.orsay.lri.varna.components.BaseTableModel
 
isCellEditable(int, int) - Method in class fr.orsay.lri.varna.views.VueBaseValues.ValueTableModel
 
isCellEditable(int, int) - Method in class fr.orsay.lri.varna.views.VueBPList.BPTableModel
 
isChooseColor(int, int) - Method in class fr.orsay.lri.varna.components.GradientEditorPanel
 
isCIS() - Method in class fr.orsay.lri.varna.models.rna.ModeleBP
 
isComparisonMode() - Method in class fr.orsay.lri.varna.VARNAPanel
Checks if the current mode is the "comparison" mode
isConnected() - Method in class fr.orsay.lri.varna.models.templates.RNATemplate
Tells whether the template elements are all connected, ie.
isConnected() - Method in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateElement.EdgeEndPoint
Tells whether this endpoint is connected with an edge to an other endpoint.
isCustomColored() - Method in class fr.orsay.lri.varna.models.rna.ModeleBPStyle
 
isDataFlavorSupported(DataFlavor) - Method in class fr.orsay.lri.varna.components.ReorderableJList.RJLTransferable
 
isEmpty() - Method in class fr.orsay.lri.varna.models.rna.StructureTemp
 
isEmpty() - Method in class fr.orsay.lri.varna.models.templates.RNATemplate
Tells whether the template contains elements.
isErrorsOn() - Method in class fr.orsay.lri.varna.VARNAPanel
Checks whether errors are to be displayed
isExtracted() - Method in class fr.orsay.lri.varna.models.naView.Base
 
isExtruded() - Method in class fr.orsay.lri.varna.models.naView.Connection
 
isFlipped() - Method in class fr.orsay.lri.varna.models.templates.RNATemplate.RNATemplateHelix
 
isInSelection(int) - Method in class fr.orsay.lri.varna.VARNAPanel
 
isInterpolationInProgress() - Method in class fr.orsay.lri.varna.VARNAPanel
Checks whether an interpolated transition bewteen two RNAs is occurring.
isLastItem - Variable in class fr.orsay.lri.varna.components.ReorderableJList.ReorderableListCellRenderer
 
isLimited() - Method in class fr.orsay.lri.varna.views.VueAnnotation
 
isMark() - Method in class fr.orsay.lri.varna.models.naView.Loop
 
isModifiable() - Method in class fr.orsay.lri.varna.VARNAPanel
Returns current modification status
isNewAnnotation() - Method in class fr.orsay.lri.varna.views.VueAnnotation
 
isNull() - Method in class fr.orsay.lri.varna.models.naView.Connection
 
isNumberDrawn(ModeleBase, int) - Method in class fr.orsay.lri.varna.models.rna.RNA
 
isOut() - Method in class fr.orsay.lri.varna.models.annotations.ChemProbAnnotation
 
isOutOfFrame() - Method in class fr.orsay.lri.varna.VARNAPanel
Checks whether the drawn RNA is too large to be displayed, allowing for shifting mouse interactions.
isRemove(int, int) - Method in class fr.orsay.lri.varna.components.GradientEditorPanel
 
isSelfCrossing(int[]) - Static method in class fr.orsay.lri.varna.models.rna.RNAMLParser
 
isSelfCrossing() - Method in class fr.orsay.lri.varna.models.templates.RNATemplate.RemovePseudoKnots
Tells whether there is a pseudoknot.
isSingleNode() - Method in class fr.orsay.lri.varna.models.treealign.RNANodeValue2
 
isTargetCell - Variable in class fr.orsay.lri.varna.components.ReorderableJList.ReorderableListCellRenderer
 
isTRANS() - Method in class fr.orsay.lri.varna.models.rna.ModeleBP
 
isWobbleUG() - Method in class fr.orsay.lri.varna.models.rna.ModeleBP
 
itemStateChanged(ItemEvent) - Method in class fr.orsay.lri.varna.views.VueChemProbAnnotation
 
itemStateChanged(ItemEvent) - Method in class fr.orsay.lri.varna.views.VueColorMapStyle
 
iter - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.ConvertToTree
 
iter - Variable in class fr.orsay.lri.varna.models.templates.RNATemplate.RNAIterator
 
iterator() - Method in class fr.orsay.lri.varna.models.treealign.Tree
 

A B C D E F G H I K L M N O P Q R S T U V W X Y Z _