Uses of Class
fr.orsay.lri.varna.models.treealign.TreeAlignResult

Packages that use TreeAlignResult
fr.orsay.lri.varna.models.templates   
fr.orsay.lri.varna.models.treealign   
 

Uses of TreeAlignResult in fr.orsay.lri.varna.models.templates
 

Methods in fr.orsay.lri.varna.models.templates that return TreeAlignResult
static TreeAlignResult<RNANodeValue2,RNANodeValueTemplate> RNATemplateAlign.alignRNAWithTemplate(RNA rna, RNATemplate template)
          Align the given RNA with the given RNA template.
 

Methods in fr.orsay.lri.varna.models.templates with parameters of type TreeAlignResult
static RNATemplateMapping RNATemplateAlign.makeTemplateMapping(TreeAlignResult<RNANodeValue2,RNANodeValueTemplate> alignResult, RNA rna)
          This method takes an alignment between a tree of RNANodeValue2 of RNANodeValue and a tree of RNANodeValue2 of RNANodeValueTemplate, and the original RNA object that was used to create the first tree in the alignment.
 

Uses of TreeAlignResult in fr.orsay.lri.varna.models.treealign
 

Methods in fr.orsay.lri.varna.models.treealign that return TreeAlignResult
 TreeAlignResult<ValueType1,ValueType2> TreeAlign.align(Tree<ValueType1> T1, Tree<ValueType2> T2)
          Align T1 with T2, computing both the distance and the alignment.