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object
- Variable in class fr.orsay.lri.varna.components.
ReorderableJList.RJLTransferable
objFun(int, int, double, double, double)
- Static method in class fr.orsay.lri.varna.models.rna.
RNA
onHoverChanged(ModeleBase, ModeleBase)
- Method in interface fr.orsay.lri.varna.interfaces.
InterfaceVARNASelectionListener
Specifies an action that should be performed upon changing the hovered base.
onLayoutChanged(Hashtable<Integer, Point2D.Double>)
- Method in interface fr.orsay.lri.varna.interfaces.
InterfaceVARNARNAListener
Reacts to displacement of
onSelectionChanged(BaseList, BaseList, BaseList)
- Method in interface fr.orsay.lri.varna.interfaces.
InterfaceVARNASelectionListener
Specifies the action to be performed upon changing the selection.
onSequenceChanged(int, String, String)
- Method in interface fr.orsay.lri.varna.interfaces.
InterfaceVARNARNAListener
Reacts to changes being made at the sequence level.
onStructureChanged(Set<ModeleBP>, Set<ModeleBP>, Set<ModeleBP>)
- Method in interface fr.orsay.lri.varna.interfaces.
InterfaceVARNARNAListener
Reacts to modification of the structure (Base-pair addition/removal).
onStructureRedrawn()
- Method in interface fr.orsay.lri.varna.interfaces.
InterfaceVARNAListener
onUINewStructure(VARNAConfig, RNA)
- Method in interface fr.orsay.lri.varna.interfaces.
InterfaceVARNAListener
onWarningEmitted(String)
- Method in interface fr.orsay.lri.varna.interfaces.
InterfaceVARNAListener
orderStrands(int)
- Method in class fr.orsay.lri.varna.models.rna.
Motif
orientation
- Variable in class fr.orsay.lri.varna.models.rna.
RNAMLParser.BPTemp
orientationOpt
- Static variable in class fr.orsay.lri.varna.models.
VARNAConfigLoader
origin
- Variable in class fr.orsay.lri.varna.models.treealign.
RNANodeValue
Used to store the origin of this base / base pair.
origine
- Variable in class fr.orsay.lri.varna.models.export.
ArcCommand
otherEndPoint
- Variable in class fr.orsay.lri.varna.models.templates.
RNATemplate.RNATemplateElement.EdgeEndPoint
out
- Variable in class fr.orsay.lri.varna.models.templates.
RNATemplate.RNATemplateUnpairedSequence
The helixes connected on both sides.
out1
- Variable in class fr.orsay.lri.varna.models.templates.
RNATemplate.RNATemplateHelix
If we go through all bases of the RNA from first to last, we will pass twice through this helix.
out2
- Variable in class fr.orsay.lri.varna.models.templates.
RNATemplate.RNATemplateHelix
If we go through all bases of the RNA from first to last, we will pass twice through this helix.
outlineColor
- Variable in class fr.orsay.lri.varna.components.
BaseTableModel
outlineShow
- Variable in class fr.orsay.lri.varna.views.
VueHighlightRegionEdit
outTangentVectorAngle
- Variable in class fr.orsay.lri.varna.models.templates.
RNATemplate.RNATemplateUnpairedSequence
The sequence is drawn along a cubic Bezier curve.
outTangentVectorLength
- Variable in class fr.orsay.lri.varna.models.templates.
RNATemplate.RNATemplateUnpairedSequence
The sequence is drawn along a cubic Bezier curve.
outward
- Variable in class fr.orsay.lri.varna.views.
VueChemProbAnnotation
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