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Hierarchy For All Packages
Package Hierarchies:
fr.orsay.lri.varna
,
fr.orsay.lri.varna.components
,
fr.orsay.lri.varna.interfaces
,
fr.orsay.lri.varna.models
,
fr.orsay.lri.varna.models.annotations
,
fr.orsay.lri.varna.models.export
,
fr.orsay.lri.varna.models.naView
,
fr.orsay.lri.varna.models.rna
,
fr.orsay.lri.varna.models.templates
,
fr.orsay.lri.varna.models.treealign
,
fr.orsay.lri.varna.views
Class Hierarchy
java.lang.
Object
javax.swing.
AbstractCellEditor
(implements javax.swing.
CellEditor
, java.io.
Serializable
)
fr.orsay.lri.varna.components.
ActionEditor
(implements javax.swing.table.
TableCellEditor
)
fr.orsay.lri.varna.components.
BaseSpecialColorEditor
(implements javax.swing.table.
TableCellEditor
)
javax.swing.table.
AbstractTableModel
(implements java.io.
Serializable
, javax.swing.table.
TableModel
)
fr.orsay.lri.varna.components.
AnnotationTableModel
fr.orsay.lri.varna.components.
BaseTableModel
fr.orsay.lri.varna.views.
VueBaseValues.ValueTableModel
fr.orsay.lri.varna.views.
VueBPList.BPTableModel
javax.swing.undo.
AbstractUndoableEdit
(implements java.io.
Serializable
, javax.swing.undo.
UndoableEdit
)
fr.orsay.lri.varna.models.
VARNAEdits.AddBPEdit
fr.orsay.lri.varna.models.
VARNAEdits.BasesShiftEdit
fr.orsay.lri.varna.models.
VARNAEdits.HelixFlipEdit
fr.orsay.lri.varna.models.
VARNAEdits.HelixRotateEdit
fr.orsay.lri.varna.models.
VARNAEdits.RedrawEdit
fr.orsay.lri.varna.models.
VARNAEdits.RemoveBPEdit
fr.orsay.lri.varna.models.
VARNAEdits.RotateRNAEdit
fr.orsay.lri.varna.models.
VARNAEdits.SingleBaseMoveEdit
fr.orsay.lri.varna.models.treealign.
AlignedNode
<OriginalNodeValueType1,OriginalNodeValueType2> (implements fr.orsay.lri.varna.models.treealign.
GraphvizDrawableNodeValue
)
fr.orsay.lri.varna.models.naView.
Base
fr.orsay.lri.varna.models.
BaseList
fr.orsay.lri.varna.models.annotations.
ChemProbAnnotation
(implements java.io.
Serializable
)
java.awt.
Component
(implements java.awt.image.
ImageObserver
, java.awt.
MenuContainer
, java.io.
Serializable
)
java.awt.
Container
javax.swing.
JComponent
(implements java.io.
Serializable
)
javax.swing.
AbstractButton
(implements java.awt.
ItemSelectable
, javax.swing.
SwingConstants
)
javax.swing.
JButton
(implements javax.accessibility.
Accessible
)
fr.orsay.lri.varna.components.
ActionRenderer
(implements javax.swing.table.
TableCellRenderer
)
javax.swing.
JLabel
(implements javax.accessibility.
Accessible
, javax.swing.
SwingConstants
)
fr.orsay.lri.varna.components.
ColorRenderer
(implements javax.swing.table.
TableCellRenderer
)
javax.swing.
DefaultListCellRenderer
(implements javax.swing.
ListCellRenderer
, java.io.
Serializable
)
fr.orsay.lri.varna.components.
ReorderableJList.ReorderableListCellRenderer
javax.swing.
JList
(implements javax.accessibility.
Accessible
, javax.swing.
Scrollable
)
fr.orsay.lri.varna.components.
ReorderableJList
(implements java.awt.dnd.
DragGestureListener
, java.awt.dnd.
DragSourceListener
, java.awt.dnd.
DropTargetListener
)
javax.swing.
JPanel
(implements javax.accessibility.
Accessible
)
fr.orsay.lri.varna.components.
GradientEditorPanel
(implements java.awt.event.
MouseListener
, java.awt.event.
MouseMotionListener
)
fr.orsay.lri.varna.views.
PrintPanel
(implements java.awt.print.
Printable
)
fr.orsay.lri.varna.
VARNAPanel
fr.orsay.lri.varna.views.
VueAboutPanel
fr.orsay.lri.varna.views.
VueBases
fr.orsay.lri.varna.views.
VueBaseValues
(implements javax.swing.event.
TableModelListener
)
fr.orsay.lri.varna.views.
VueBPList
(implements java.awt.event.
ActionListener
, javax.swing.event.
TableModelListener
)
fr.orsay.lri.varna.views.
VueColorMapStyle
(implements java.awt.event.
ActionListener
, java.awt.event.
ItemListener
, java.beans.
PropertyChangeListener
)
fr.orsay.lri.varna.views.
VueListeAnnotations
fr.orsay.lri.varna.views.
VueLoadColorMapValues
(implements java.awt.event.
ActionListener
)
javax.swing.
JPopupMenu
(implements javax.accessibility.
Accessible
, javax.swing.
MenuElement
)
fr.orsay.lri.varna.views.
VueMenu
java.awt.
Window
(implements javax.accessibility.
Accessible
)
java.awt.
Frame
(implements java.awt.
MenuContainer
)
javax.swing.
JFrame
(implements javax.accessibility.
Accessible
, javax.swing.
RootPaneContainer
, javax.swing.
WindowConstants
)
fr.orsay.lri.varna.views.
PrintTestFrame
fr.orsay.lri.varna.components.
VARNAConsole
(implements java.awt.event.
ActionListener
, java.awt.event.
FocusListener
, java.awt.event.
KeyListener
)
fr.orsay.lri.varna.models.naView.
Connection
fr.orsay.lri.varna.models.
CubicBezierCurve
org.xml.sax.helpers.
DefaultHandler
(implements org.xml.sax.
ContentHandler
, org.xml.sax.
DTDHandler
, org.xml.sax.
EntityResolver
, org.xml.sax.
ErrorHandler
)
fr.orsay.lri.varna.models.rna.
RNAMLParser
fr.orsay.lri.varna.models.treealign.
ExampleDistance2
(implements fr.orsay.lri.varna.models.treealign.
TreeAlignLabelDistanceSymmetric
<ValueType>)
fr.orsay.lri.varna.models.treealign.
ExampleDistance3
(implements fr.orsay.lri.varna.models.treealign.
TreeAlignLabelDistanceSymmetric
<ValueType>)
fr.orsay.lri.varna.models.treealign.
ExampleDistance3.SequenceAlignResult
fr.orsay.lri.varna.models.
FullBackup
(implements java.io.
Serializable
)
fr.orsay.lri.varna.models.export.
GraphicElement
fr.orsay.lri.varna.models.export.
ArcCommand
fr.orsay.lri.varna.models.export.
CircleCommand
fr.orsay.lri.varna.models.export.
ColorCommand
fr.orsay.lri.varna.models.export.
FillCircleCommand
fr.orsay.lri.varna.models.export.
FillPolygonCommand
fr.orsay.lri.varna.models.export.
FontCommand
fr.orsay.lri.varna.models.export.
LineCommand
fr.orsay.lri.varna.models.export.
PolygonCommand
fr.orsay.lri.varna.models.export.
RectangleCommand
fr.orsay.lri.varna.models.export.
TextCommand
fr.orsay.lri.varna.models.annotations.
HighlightRegionAnnotation
(implements java.io.
Serializable
)
fr.orsay.lri.varna.views.
Imprimer
(implements java.awt.print.
Printable
)
fr.orsay.lri.varna.interfaces.
InterfaceVARNAObservable
fr.orsay.lri.varna.models.rna.
RNA
(implements java.io.
Serializable
)
fr.orsay.lri.varna.models.naView.
Loop
fr.orsay.lri.varna.models.rna.
Mapping
(implements java.io.
Serializable
)
fr.orsay.lri.varna.models.rna.
ModeleBase
(implements java.lang.
Comparable
<T>, java.io.
Serializable
)
fr.orsay.lri.varna.models.rna.
ExtendedMB
fr.orsay.lri.varna.models.rna.
ModeleBaseNucleotide
fr.orsay.lri.varna.models.rna.
ModeleBasesComparison
fr.orsay.lri.varna.models.rna.
ModeleBP
(implements java.lang.
Comparable
<T>, java.io.
Serializable
)
fr.orsay.lri.varna.models.rna.
ModeleBPStyle
(implements java.io.
Serializable
)
fr.orsay.lri.varna.models.rna.
ModeleColorMap
(implements java.lang.
Cloneable
, java.io.
Serializable
)
fr.orsay.lri.varna.models.rna.
ModeleStrand
fr.orsay.lri.varna.models.rna.
ModeleStyleBase
(implements java.lang.
Cloneable
, java.io.
Serializable
)
fr.orsay.lri.varna.models.rna.
Motif
(implements java.io.
Serializable
)
fr.orsay.lri.varna.models.naView.
NAView
fr.orsay.lri.varna.views.
PrintTest
fr.orsay.lri.varna.models.naView.
Radloop
fr.orsay.lri.varna.models.naView.
Region
fr.orsay.lri.varna.components.
ReorderableJList.RJLTransferable
(implements java.awt.datatransfer.
Transferable
)
fr.orsay.lri.varna.models.rna.
RNA.ComputeArcCenter
fr.orsay.lri.varna.models.rna.
RNA.DrawRNATemplateMethod
fr.orsay.lri.varna.models.rna.
RNAMLParser.BPTemp
fr.orsay.lri.varna.models.rna.
RNAMLParser.HelixTemp
fr.orsay.lri.varna.models.treealign.
RNANodeValue
(implements fr.orsay.lri.varna.models.treealign.
GraphvizDrawableNodeValue
)
fr.orsay.lri.varna.models.treealign.
RNANodeValue2
(implements fr.orsay.lri.varna.models.treealign.
GraphvizDrawableNodeValue
)
fr.orsay.lri.varna.models.templates.
RNANodeValue2TemplateDistance
(implements fr.orsay.lri.varna.models.treealign.
TreeAlignLabelDistanceAsymmetric
<ValueType1,ValueType2>)
fr.orsay.lri.varna.models.templates.
RNANodeValueTemplate
(implements fr.orsay.lri.varna.models.treealign.
GraphvizDrawableNodeValue
)
fr.orsay.lri.varna.models.templates.
RNANodeValueTemplateBasePair
fr.orsay.lri.varna.models.templates.
RNANodeValueTemplateBrokenBasePair
fr.orsay.lri.varna.models.templates.
RNANodeValueTemplateSequence
fr.orsay.lri.varna.models.templates.
RNATemplate
fr.orsay.lri.varna.models.templates.
RNATemplate.ConvertToTree
fr.orsay.lri.varna.models.templates.
RNATemplate.ConvertToXml
fr.orsay.lri.varna.models.templates.
RNATemplate.LoadFromXml
fr.orsay.lri.varna.models.templates.
RNATemplate.MakeEdgeList
fr.orsay.lri.varna.models.templates.
RNATemplate.RemovePseudoKnots
fr.orsay.lri.varna.models.templates.
RNATemplate.RNAIterator
(implements java.util.
Iterator
<E>)
fr.orsay.lri.varna.models.templates.
RNATemplate.RNATemplateElement
fr.orsay.lri.varna.models.templates.
RNATemplate.RNATemplateHelix
fr.orsay.lri.varna.models.templates.
RNATemplate.RNATemplateUnpairedSequence
fr.orsay.lri.varna.models.templates.
RNATemplate.RNATemplateElement.EdgeEndPoint
fr.orsay.lri.varna.models.templates.
RNATemplate.VertexIterator
(implements java.util.
Iterator
<E>)
fr.orsay.lri.varna.models.templates.
RNATemplateAlign
fr.orsay.lri.varna.models.templates.
RNATemplateMapping
fr.orsay.lri.varna.models.treealign.
RNATree
fr.orsay.lri.varna.models.treealign.
RNATree.ConvertToMapping
fr.orsay.lri.varna.models.treealign.
RNATree.ConvertToTree
fr.orsay.lri.varna.models.treealign.
RNATree2
fr.orsay.lri.varna.models.treealign.
RNATree2.ConvertToMapping
fr.orsay.lri.varna.models.export.
SecStrDrawingProducer
fr.orsay.lri.varna.models.export.
PSExport
fr.orsay.lri.varna.models.export.
SVGExport
fr.orsay.lri.varna.models.export.
XFIGExport
fr.orsay.lri.varna.models.export.
SecStrProducerGraphics
(implements fr.orsay.lri.varna.models.export.
VueVARNAGraphics
)
fr.orsay.lri.varna.models.rna.
StructureTemp
(implements java.io.
Serializable
)
fr.orsay.lri.varna.models.export.
SwingGraphics
(implements fr.orsay.lri.varna.models.export.
VueVARNAGraphics
)
fr.orsay.lri.varna.models.annotations.
TextAnnotation
(implements java.io.
Serializable
)
java.lang.
Thread
(implements java.lang.
Runnable
)
fr.orsay.lri.varna.views.
VueAboutPanel.AboutAnimator
java.lang.
Throwable
(implements java.io.
Serializable
)
java.lang.
Exception
fr.orsay.lri.varna.exceptions.ExceptionDrawingAlgorithm
fr.orsay.lri.varna.models.templates.
RNATemplateDrawingAlgorithmException
fr.orsay.lri.varna.models.templates.
RNATemplateMappingException
fr.orsay.lri.varna.models.treealign.
RNATree2Exception
java.lang.
RuntimeException
java.lang.
NullPointerException
fr.orsay.lri.varna.models.treealign.
RNANodeValue2WrongTypeException
fr.orsay.lri.varna.models.treealign.
TreeAlignException
fr.orsay.lri.varna.models.treealign.
Tree
<T> (implements java.lang.
Iterable
<T>)
fr.orsay.lri.varna.models.treealign.
Tree.DFSPrefixIterator
(implements java.util.
Iterator
<E>)
fr.orsay.lri.varna.models.treealign.
TreeAlign
<ValueType1,ValueType2>
fr.orsay.lri.varna.models.treealign.
TreeAlign.Aligner
fr.orsay.lri.varna.models.treealign.
TreeAlign.ConvertTreeToArray
<ValueType>
fr.orsay.lri.varna.models.treealign.
TreeAlign.TreeData
<ValueType>
fr.orsay.lri.varna.models.treealign.
TreeAlignResult
<ValueType1,ValueType2>
fr.orsay.lri.varna.models.treealign.
TreeGraphviz
fr.orsay.lri.varna.models.
VARNAConfig
(implements java.lang.
Cloneable
, java.io.
Serializable
)
fr.orsay.lri.varna.models.
VARNAConfigLoader
fr.orsay.lri.varna.models.
VARNAEdits
fr.orsay.lri.varna.models.rna.
VARNAPoint
(implements java.io.
Serializable
)
fr.orsay.lri.varna.models.rna.
VARNASecDraw
fr.orsay.lri.varna.models.rna.
VARNASecDraw.HelixEmbedding
fr.orsay.lri.varna.models.rna.
VARNASecDraw.Portion
fr.orsay.lri.varna.models.rna.
VARNASecDraw.PairedPortion
fr.orsay.lri.varna.models.rna.
VARNASecDraw.UnpairedPortion
fr.orsay.lri.varna.models.rna.
VARNASecDraw.RNATree
fr.orsay.lri.varna.views.
VueAnnotation
fr.orsay.lri.varna.views.
VueBorder
fr.orsay.lri.varna.views.
VueBPHeightIncrement
fr.orsay.lri.varna.views.
VueBPThickness
(implements javax.swing.event.
ChangeListener
)
fr.orsay.lri.varna.views.
VueBPType
(implements java.awt.event.
ActionListener
)
fr.orsay.lri.varna.views.
VueChemProbAnnotation
(implements java.awt.event.
ActionListener
, javax.swing.event.
ChangeListener
, java.awt.event.
ItemListener
)
fr.orsay.lri.varna.views.
VueFont
fr.orsay.lri.varna.views.
VueGlobalRotation
fr.orsay.lri.varna.views.
VueHighlightRegionEdit
(implements java.awt.event.
ActionListener
, javax.swing.event.
ChangeListener
)
fr.orsay.lri.varna.views.
VueJPEG
fr.orsay.lri.varna.views.
VueManualInput
fr.orsay.lri.varna.views.
VueNumPeriod
fr.orsay.lri.varna.views.
VueSpaceBetweenBases
fr.orsay.lri.varna.views.
VueStyleBP
(implements java.awt.event.
ActionListener
)
fr.orsay.lri.varna.views.
VueUI
fr.orsay.lri.varna.views.
VueZoom
(implements javax.swing.event.
ChangeListener
)
Interface Hierarchy
fr.orsay.lri.varna.models.treealign.
GraphvizDrawableNodeValue
fr.orsay.lri.varna.interfaces.
InterfaceParameterLoader
fr.orsay.lri.varna.interfaces.
InterfaceVARNAListener
fr.orsay.lri.varna.interfaces.
InterfaceVARNARNAListener
fr.orsay.lri.varna.interfaces.
InterfaceVARNASelectionListener
fr.orsay.lri.varna.models.treealign.
TreeAlignLabelDistanceAsymmetric
<ValueType1,ValueType2>
fr.orsay.lri.varna.models.treealign.
TreeAlignLabelDistanceSymmetric
<ValueType>
fr.orsay.lri.varna.models.export.
VueVARNAGraphics
Enum Hierarchy
java.lang.
Object
java.lang.
Enum
<E> (implements java.lang.
Comparable
<T>, java.io.
Serializable
)
fr.orsay.lri.varna.models.
VARNAConfig.BP_STYLE
(implements java.io.
Serializable
)
fr.orsay.lri.varna.views.
VueBPList.Actions
fr.orsay.lri.varna.models.annotations.
ChemProbAnnotation.ChemProbAnnotationType
fr.orsay.lri.varna.models.templates.
RNATemplate.In1Is
fr.orsay.lri.varna.models.templates.
RNATemplate.EdgeEndPointPosition
fr.orsay.lri.varna.models.treealign.
RNANodeValue.Origin
fr.orsay.lri.varna.models.rna.
ModeleColorMap.NamedColorMapTypes
fr.orsay.lri.varna.models.rna.
ModeleBP.Edge
fr.orsay.lri.varna.models.rna.
ModeleBP.Stericity
fr.orsay.lri.varna.models.rna.
ModeleBaseNucleotide.STATE_SPECIAL_CHARS_STATES
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV NEXT
FRAMES
NO FRAMES
All Classes