Uses of Class
fr.orsay.lri.varna.models.naView.Connection

Packages that use Connection
fr.orsay.lri.varna.models.naView   
 

Uses of Connection in fr.orsay.lri.varna.models.naView
 

Fields in fr.orsay.lri.varna.models.naView with type parameters of type Connection
private  Hashtable<Integer,Connection> Loop._connections
           
private  ArrayList<Connection> Loop.connections
           
 

Methods in fr.orsay.lri.varna.models.naView that return Connection
 Connection Loop.getConnection(int i)
           
 

Methods in fr.orsay.lri.varna.models.naView with parameters of type Connection
 void Loop.addConnection(int i, Connection c)
           
private  boolean NAView.connected_connection(Connection cp, Connection cpnext)
          Determines if the connections cp and cpnext are connected
private  void NAView.construct_extruded_segment(Connection cp, Connection cpnext)
          Constructs the segment between cp and cpnext as a circle if possible.
private  int NAView.find_ic_middle(int icstart, int icend, Connection anchor_connection, Connection acp, Loop lp)
          Finds the middle of a set of connected connectors.
private  void NAView.generate_region(Connection cp)
          Generates the coordinates for the base pairing region of a connection given the position of the starting base pair.
 void Loop.setConnection(int i, Connection c)
           
private  void NAView.traverse_loop(Loop lp, Connection anchor_connection)
          This is the workhorse of the display program.