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U
UIAbout()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAddBP(int, int, ModeleBP)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAnnotationAddFromStructure(int, ArrayList<Integer>)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAnnotationEditFromAnnotation(TextAnnotation)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAnnotationEditFromStructure(int, ArrayList<Integer>)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAnnotationRemoveFromAnnotation(TextAnnotation)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAnnotationRemoveFromStructure(int, ArrayList<Integer>)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAnnotationsAdd()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAnnotationsAddBase(int, int)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAnnotationsAddChemProb(int, int)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAnnotationsAddHelix(int, int)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAnnotationsAddLoop(int, int)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAnnotationsAddPosition(int, int)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAnnotationsAddRegion(int, int)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAnnotationsEdit()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAnnotationsRemove()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAutoAnnotateHelices()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAutoAnnotateInteriorLoops()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAutoAnnotateStrandEnds()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIAutoAnnotateTerminalLoops()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIBaseAllColor()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIBasePairTypeColor()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIBaseTypeColor()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIChooseOutputFile(FileNameExtensionFilter)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIChooseOutputFile(ArrayList<FileNameExtensionFilter>)
- Method in class fr.orsay.lri.varna.views.
VueUI
Opens a save dialog with right extensions and return the absolute path
UICircular()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIColorBasePair()
- Method in class fr.orsay.lri.varna.views.
VueUI
UICustomZoom()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIEditAllBasePairs()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIEditBasePair()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIExport()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIExportEPS()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIExportJPEG()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIExportPNG()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIExportSVG()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIExportXFIG()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIFile()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIFlipHelix(Point)
- Method in class fr.orsay.lri.varna.views.
VueUI
Flip an helix around its supporting base
UIGlobalRotation()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIGlobalRotation(double)
- Method in class fr.orsay.lri.varna.views.
VueUI
UILine()
- Method in class fr.orsay.lri.varna.views.
VueUI
UILoadColorMapValues()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIManualInput()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIMOTIFView()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIMoveHelixAtom(int, Point2D.Double)
- Method in class fr.orsay.lri.varna.views.
VueUI
Move a helix of the rna
UIMoveSingleBase(int, double, double)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIMoveSingleBase(int, Point2D.Double)
- Method in class fr.orsay.lri.varna.views.
VueUI
UINAView()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIPickGapsBasesColor()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIPickSpecialBasesColor()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIPrint()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIRadiate()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIRedo()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIRemoveBP(ModeleBP)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIReset()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIRotateEverything(double, double, double, double, Point, Point)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIRotateHelixAtom(int, Point2D.Double)
- Method in class fr.orsay.lri.varna.views.
VueUI
UISaveAs()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISaveAsBPSEQ()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISaveAsCT()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISaveAsDBN()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISetBackboneColor()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISetBackground()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISetBaseCenter(int, double, double)
- Method in class fr.orsay.lri.varna.views.
VueUI
UISetBaseCenter(int, Point2D.Double)
- Method in class fr.orsay.lri.varna.views.
VueUI
UISetBaseCharacter()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISetBorder()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISetBPHeightIncrement()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISetBPStyle()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISetColorMapCaption()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISetColorMapStyle()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISetColorMapValues()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISetNumPeriod()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISetSpaceBetweenBases()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISetTitle()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISetTitleColor()
- Method in class fr.orsay.lri.varna.views.
VueUI
UISetTitleFont()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIShiftBaseCoord(ArrayList<Integer>, double, double)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIShiftBaseCoord(ArrayList<Integer>, Point2D.Double)
- Method in class fr.orsay.lri.varna.views.
VueUI
UIThicknessBasePair()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIToggleColorGapsBases()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIToggleColorMap()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIToggleColorSpecialBases()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIToggleFlatExteriorLoop()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIToggleGaspinMode()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIToggleModifiable()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIToggleShowNCBP()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIToggleShowNonPlanar()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIToggleShowWarnings()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIUndo()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIVARNAView()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIvueBases()
- Method in class fr.orsay.lri.varna.views.
VueBases
Create the GUI and show it.
UIvueListeAnnotations()
- Method in class fr.orsay.lri.varna.views.
VueListeAnnotations
Create the GUI and show it.
UIZoomIn()
- Method in class fr.orsay.lri.varna.views.
VueUI
UIZoomOut()
- Method in class fr.orsay.lri.varna.views.
VueUI
undo()
- Method in class fr.orsay.lri.varna.models.
VARNAEdits.AddBPEdit
undo()
- Method in class fr.orsay.lri.varna.models.
VARNAEdits.BasesShiftEdit
undo()
- Method in class fr.orsay.lri.varna.models.
VARNAEdits.HelixFlipEdit
undo()
- Method in class fr.orsay.lri.varna.models.
VARNAEdits.HelixRotateEdit
undo()
- Method in class fr.orsay.lri.varna.models.
VARNAEdits.RedrawEdit
undo()
- Method in class fr.orsay.lri.varna.models.
VARNAEdits.RemoveBPEdit
undo()
- Method in class fr.orsay.lri.varna.models.
VARNAEdits.RotateRNAEdit
undo()
- Method in class fr.orsay.lri.varna.models.
VARNAEdits.SingleBaseMoveEdit
undo()
- Method in class fr.orsay.lri.varna.
VARNAPanel
uniformParam(double[])
- Method in class fr.orsay.lri.varna.models.
CubicBezierCurve
Uniform approximated parametrization.
unitVectors
- Variable in class fr.orsay.lri.varna.models.
CubicBezierCurve
Array of length n.
UNKNOWN
- Static variable in class fr.orsay.lri.varna.models.rna.
Mapping
unlockScrolling()
- Method in class fr.orsay.lri.varna.
VARNAPanel
unselectedBorder
- Variable in class fr.orsay.lri.varna.components.
ColorRenderer
update()
- Method in class fr.orsay.lri.varna.views.
VueAnnotation
update the annoted text on the VARNAPanel
updateBoundingBox(double, double)
- Method in class fr.orsay.lri.varna.models.export.
SecStrDrawingProducer
updateColor(Color)
- Method in class fr.orsay.lri.varna.views.
VueAnnotation
updateDialog()
- Method in class fr.orsay.lri.varna.views.
VueMenu
updateTitleHeight()
- Method in class fr.orsay.lri.varna.
VARNAPanel
UPPER_BOUND_COLOR_CODE
- Static variable in class fr.orsay.lri.varna.models.export.
XFIGExport
urlAux
- Variable in class fr.orsay.lri.varna.views.
VueLoadColorMapValues
urlCB
- Variable in class fr.orsay.lri.varna.views.
VueLoadColorMapValues
URLOpt
- Static variable in class fr.orsay.lri.varna.models.
VARNAConfigLoader
urlTxt
- Variable in class fr.orsay.lri.varna.views.
VueLoadColorMapValues
useDefaultColor()
- Method in class fr.orsay.lri.varna.models.rna.
ModeleBPStyle
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
G
H
I
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z
_