jalviewTutorial: README ======================= 14th August 2008: J.B. Procter. This is a refactored version of the Jalview Tutorial for Jalview Version 2.2 which was created by David Martin in 2006. TheJalviewTutorial.tex is the main tex file. images/ contain the images included in the tutorial. They are PDFs created to PDF 1.5 standard (which is higher than the PDF tools available on Kinshar at time of writing). data/ contains the data used to create the tutorial images and useful data artefacs that might be provided to user. Jalview Tutorial.doc is the original word document created by the Jalview 2 team giving the basic outline used to create the tutorial. Building the document ===================== The raw output of the tex->PDF conversion should not be checked in, only the final optimised PDF. 1. pdflatex TheJalviewTutorial.tex will (after three passes) generate a properly formatted pdf file TheJalviewTutorial.pdf Caveats: ensure your pdftools cope with version 1.5 pdf files (latest pdf tools and cygwin tex packages work here). 2. use acrobat professional to optimise the TheJalviewTutorial.pdf - reduces size from 27M to about 5M. - No command line script is available to do this. 3. Save the optimised PDF as latest/TheJalviewTutorial.pdf and check it in when checking in the final tex file used to create it.