occur. After successful completion of the job, a new alignment window is opened
with the results, in this case an alignment. By default, the new alignment will be
ordered in the same way as the input sequences. Note: many alignment
-programs re-order the input to place homologous sequences close together, the
-original ordering can be recovered using the `Original ordering' entry within
-the {\sl Calculate $\Rightarrow$ Sort } sub menu.
+programs re-order the input during their analysis and place homologous
+sequences close together, the MSA algorithm ordering can be recovered
+using the `Algorithm ordering' entry within the {\sl Calculate $\Rightarrow$
+Sort } sub menu.
\begin{figure}[htbp]
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