X-Git-Url: http://source.jalview.org/gitweb/?p=jalview-manual.git;a=blobdiff_plain;f=TheJalviewTutorial.tex;h=41afd7825a9413af2fca491d7e986a364382c366;hp=5bcbf97141ff286de49d6ac13845c7ab64801899;hb=b07fbbb7d9c85480201bf8982ee1c34d36fd792d;hpb=5e6902be73485b227606649325567db50f496be9

diff --git a/TheJalviewTutorial.tex b/TheJalviewTutorial.tex
index 5bcbf97..41afd78 100644
--- a/TheJalviewTutorial.tex
+++ b/TheJalviewTutorial.tex
@@ -2286,9 +2286,10 @@ progress window will appear giving information about the job and any errors that
 occur. After successful completion of the job, a new alignment window is opened
 with the results, in this case an alignment. By default, the new alignment will be
 ordered in the same way as the input sequences. Note: many alignment
-programs re-order the input to place homologous sequences close together, the
-original ordering can be recovered using the `Original ordering' entry within
-the {\sl Calculate $\Rightarrow$ Sort } sub menu.
+programs re-order the input during their analysis and place homologous
+sequences close together, the MSA algorithm ordering can be recovered
+using the `Algorithm ordering' entry within the {\sl Calculate $\Rightarrow$
+Sort } sub menu.
 
 \begin{figure}[htbp]
 \begin{center}