JAL-4279 suppress error dialogs raised by file loader when working in batch mode2023-09-07T16:00:19ZJames Procterj.procter@dundee.ac.ukJames Procterj.procter@dundee.ac.uk2023-09-07T16:00:19Zhttp://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff;h=00295142757dcaa892733bc104547e41f5078814
JAL-4279 suppress error dialogs raised by file loader when working in batch mode
JAL-4279 move on if the file doesn't exist, or Identify fails for the file.2023-09-07T15:28:46ZJames Procterj.procter@dundee.ac.ukJames Procterj.procter@dundee.ac.uk2023-09-07T15:28:46Zhttp://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff;h=4fbf1d10221c2780c3ec9c8f9cc080ffae392c61
JAL-4279 move on if the file doesn't exist, or Identify fails for the file.
JAL-4279 catch exceptions with fileLoader and report when we don’t get an alignment... 2023-09-07T15:26:40ZJames Procterj.procter@dundee.ac.ukJames Procterj.procter@dundee.ac.uk2023-09-07T15:26:40Zhttp://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff;h=a36a254c3edbac394449bb7c9e01e2f93111ee30
JAL-4279 catch exceptions with fileLoader and report when we don’t get an alignment frame after trying to import a given file before moving on.
JAL-4273 release notes for visible adjuster marks, and patch so they are not rendered... 2023-09-07T09:45:43ZJames Procterj.procter@dundee.ac.ukJames Procterj.procter@dundee.ac.uk2023-09-07T09:45:43Zhttp://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff;h=772387bbccde43cd52ccfadb854d45b1c27f3324
JAL-4273 release notes for visible adjuster marks, and patch so they are not rendered during figure export
JAL-4260 attempt to rejig paging when id width is adjusted whilst in wrapped mode.2023-09-06T14:28:14ZJames Procterj.procter@dundee.ac.ukJames Procterj.procter@dundee.ac.uk2023-09-06T14:28:14Zhttp://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff;h=930e48ff657a783ae52370e49ff4f5bb5a2a4016
JAL-4260 attempt to rejig paging when id width is adjusted whilst in wrapped mode.
JAL-4259 construct a new SequenceRenderer when rendering an MSA to an exporter2023-09-06T13:44:33ZJames Procterj.procter@dundee.ac.ukJames Procterj.procter@dundee.ac.uk2023-09-06T13:44:33Zhttp://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff;h=eb2e3276b62ef033703f9b55bbddfdff3fe384df
JAL-4259 construct a new SequenceRenderer when rendering an MSA to an exporter
JAL-629 javadoc on new setMapping variant for structureselectionmanager2023-09-06T11:39:44ZJames Procterj.procter@dundee.ac.ukJames Procterj.procter@dundee.ac.uk2023-09-06T11:39:44Zhttp://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff;h=a0bd24f90375fc1d4be619bf65746a912dfcfc89
JAL-629 javadoc on new setMapping variant for structureselectionmanager
JAL-629 reinstate INFO level stack trace from StructureChooser service exceptions... 2023-09-06T11:28:10ZJames Procterj.procter@dundee.ac.ukJames Procterj.procter@dundee.ac.uk2023-09-06T11:28:10Zhttp://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff;h=527b7350892dd513becf6007623996498119ab57
JAL-629 reinstate INFO level stack trace from StructureChooser service exceptions and suppress external service queries when viewing structures via Command-line import
JAL-629 remove structure viewer from the list of structure viewer base instances... 2023-09-05T16:03:42ZJames Procterj.procter@dundee.ac.ukJames Procterj.procter@dundee.ac.uk2023-09-05T16:03:42Zhttp://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff;h=bd3274989cacc2be56b4f9e5dd006adb3be96637
JAL-629 remove structure viewer from the list of structure viewer base instances when its closeViewer method is called
JAL-629 use JalviewStructureDisplayI in place of StructureViewerBase2023-09-05T16:03:02ZJames Procterj.procter@dundee.ac.ukJames Procterj.procter@dundee.ac.uk2023-09-05T16:03:02Zhttp://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff;h=b8ee563aafbad9f5a0812cd1f5588ee8e9055570
JAL-629 use JalviewStructureDisplayI in place of StructureViewerBase
JAL-629 Add accessors for argParser and bootstrapArgs2023-09-02T14:14:51ZBen Soaresb.soares@dundee.ac.ukBen Soaresb.soares@dundee.ac.uk2023-09-02T14:14:51Zhttp://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff;h=b7175b93f334b38b41eb5cf53bd4f45983ba7c53
JAL-629 Add accessors for argParser and bootstrapArgs
JAL-629 Save structure frames in project files when opened and saved in headless... 2023-09-01T23:03:21ZBen Soaresb.soares@dundee.ac.ukBen Soaresb.soares@dundee.ac.uk2023-09-01T23:03:21Zhttp://source.jalview.org/gitweb/?p=jalview.git;a=commitdiff;h=9ffbc78ef4639f680f304758c88d4e1d98c13859
JAL-629 Save structure frames in project files when opened and saved in headless mode