JAL-3751 only merge strictly contiguous ranges of mappings
[jalview.git] / gradle.properties
1 # Convention for properties.  Read from gradle.properties, use lower_case_underlines for property names.
2 # For properties set within build.gradle, use camelCaseNoSpace.
3 #
4
5 jalviewDir = .
6
7 #JAVA_VERSION = 1.8
8 JAVA_VERSION = 11
9
10 source_dir = src
11 #source_dir = utils/jalviewjs/test/src
12
13 test_source_dir = test
14 #test_source_dir = utils/jalviewjs/test/test
15
16 JALVIEW_VERSION = DEVELOPMENT
17 INSTALLATION = Source
18 jalview_keystore = keys/.keystore
19 jalview_keystore.pass = alignmentisfun
20 jalview_key = jalview
21 jalview_key.pass = alignmentisfun
22 jalview_tsaurl =
23 proxyPort = 80
24 proxyHost = sqid
25 jalview_keyalg = SHA1withRSA
26 jalview_keydig = SHA1
27
28 testng_groups = Functional
29 testng_excluded_groups = 
30
31 j8libDir = j8lib
32 j11libDir = j11lib
33 resource_dir = resources
34 help_parent_dir = help
35 help_dir = help
36 doc_dir = doc
37 classes_dir = classes
38 clover = false
39 clover_classes_dir = clover-classes
40 clover_sources_instr_dir = clover-instr
41 clover_report_dir = clover-report
42 clover_lib_dir = utils/clover/lib
43 cloverreport_mem = 2g
44 cloverreport_jvmargs = -Dfile.encoding=UTF-8
45 cloverreport_html_options = 
46 cloverreport_xml_options =
47 package_dir = dist
48 ARCHIVEDIR =
49
50 test_output_dir = tests
51 utils_dir = utils
52
53 build_properties_file = .build_properties
54 application_codebase = *.jalview.org
55 main_class = jalview.bin.Jalview
56 shadow_jar_main_class = jalview.bin.Launcher
57
58 jalview_name = Jalview
59
60 getdown_local = false
61 getdown_website_dir = getdown/website
62 getdown_resource_dir = resource
63 #getdown_j11lib_dir = j11lib
64 getdown_files_dir = getdown/files
65 getdown_lib_dir = getdown/lib
66 getdown_launcher = getdown-launcher.jar
67 getdown_launcher_local = getdown-launcher-local.jar
68 getdown_launcher_new = getdown-launcher-new.jar
69 getdown_core = getdown/lib/getdown-core.jar
70 getdown_build_properties = build_properties
71 getdown_launch_jvl_name = channel_launch
72 getdown_txt_allow_offline = true
73 getdown_txt_max_concurrent_downloads = 10
74 # now got better defaults when not set
75 #getdown_txt_jalview.jvmmempc = 90
76 # now got better defaults when not set
77 #getdown_txt_jalview.jvmmemmax = 32G
78 getdown_txt_multi_jvmarg = -Dgetdownappdir=%APPDIR%
79 getdown_txt_strict_comments = true
80 getdown_txt_ui.progress_sync_before_shown = true
81 getdown_txt_ui.progress_sync_after_shown = false
82 getdown_txt_ui.keep_on_top = true
83 getdown_txt_ui.display_appbase = true
84 getdown_txt_ui.display_version = true
85 getdown_txt_ui.min_show_seconds = 6
86 getdown_txt_ui.background = FFFFFF
87 getdown_txt_ui.background_image = utils/getdown/jalview_logo_background_getdown-640x480.png
88 getdown_txt_ui.instant_background_image = utils/getdown/jalview_logo_background_getdown_instant-640x480.png
89 getdown_txt_ui.error_background = utils/getdown/jalview_logo_background_getdown_error-640x480.png
90 getdown_txt_ui.progress_image = utils/getdown/jalview_logo_background_getdown-progress.png
91 getdown_txt_ui.icon = resources/images/JalviewLogo_Huge.png
92 getdown_txt_ui.progress = 20, 440, 600, 22
93 getdown_txt_ui.progress_bar = AAAAFF
94 getdown_txt_ui.progress_text = 000000
95 getdown_txt_ui.status = 20, 380, 600, 58
96 getdown_txt_ui.status_text = 000066
97 #getdown_txt_ui.text_shadow = FFFFFF
98 getdown_txt_ui.install_error = https://www.jalview.org/faq/getdownerror
99 getdown_txt_ui.mac_dock_icon = resources/images/jalview_logos.ico
100 getdown_alt_java8_min_version  = 01080000
101 getdown_alt_java8_max_version  = 01089999
102 getdown_alt_java11_min_version = 11000000
103 getdown_alt_java11_max_version =
104 #getdown_alt_java11_txt_multi_java_location = [windows-amd64] /getdown/jre/windows-jre11.jar,[linux-amd64] /getdown/jre/linux-jre11.tgz,[mac os x] /getdown/jre/macos-jre11.tgz
105 #getdown_alt_java8_txt_multi_java_location = [windows-amd64] /getdown/jre/windows-jre1.8.tgz,[linux-amd64] /getdown/jre/linux-jre1.8.tgz,[mac os x] /getdown/jre/macos-jre1.8.tgz
106 jre_installs_dir = ~/buildtools/jre
107
108 j8libDir = j8lib
109 j8digestonlyDir = j8digestonly
110 j11libDir = j11lib
111 j11modDir = j11mod
112 j11modules = com.sun.istack.runtime,com.sun.xml.bind,com.sun.xml.fastinfoset,com.sun.xml.streambuffer,com.sun.xml.txw2,com.sun.xml.ws.policy,java.activation,java.annotation,java.base,java.compiler,java.datatransfer,java.desktop,java.logging,java.management,java.management.rmi,java.naming,java.prefs,java.rmi,java.scripting,java.security.sasl,java.sql,java.xml,java.xml.bind,java.xml.soap,java.xml.ws,javax.jws,jdk.httpserver,jdk.jsobject,jdk.unsupported,jdk.xml.dom,org.jvnet.mimepull,org.jvnet.staxex,javax.servlet.api,java.ws.rs
113 j11digestonlyDir = j11digestonly
114
115
116 install4j_home_dir = ~/buildtools/install4j8
117 install4j_copyright_message = ...
118 install4j_bundle_id = org.jalview.jalview-desktop
119 install4j_utils_dir = utils/install4j
120 install4j_template = install4j8_template.install4j
121 install4j_info_plist_file_associations = file_associations_auto-Info_plist.xml
122 install4j_installer_file_associations = file_associations_auto-install4j8.xml
123 #install4j_DMG_uninstaller_app_files = uninstall_old_jalview_files.xml
124 install4j_build_dir = build/install4j
125 install4j_media_types = windows,macosArchive,unixArchive,unixInstaller
126 install4j_faster = false
127 install4j_application_categories = Science;Biology;Java;
128 install4j_release_win_application_id = 6595-2347-1923-0725
129
130 OSX_KEYSTORE =
131 OSX_KEYPASS =
132 JSIGN_SH = echo
133
134 pandoc_exec = /usr/local/bin/pandoc,/usr/bin/pandoc
135 dev = false
136
137 CHANNEL=LOCAL
138 getdown_channel_base = https://www.jalview.org/getdown
139 getdown_app_dir_release = release
140 getdown_app_dir_alt = alt
141 getdown_app_dir_java = jre
142 getdown_install_dir = install
143 getdown_rsync_dest = /Volumes/jalview/docroot/getdown
144 reportRsyncCommand =
145 RUNRSYNC=false
146
147 bamboo_channelbase = https://builds.jalview.org/browse
148 bamboo_planKey = 
149 bamboo_getdown_channel_suffix = /latest/artifact/shared/getdown-channel
150
151 eclipse_extra_jdt_prefs_file = utils/eclipse/org.eclipse.jdt.core.jalview.prefs
152 eclipse_project_name = jalview
153 eclipse_bin_dir = bin
154 eclipse_debug = false
155
156 # for developing in Eclipse as IDE, set this to automatically copy current swingjs/net.sf.j2s.core.jar to your dropins dir
157 jalviewjs_eclipseIDE_auto_copy_j2s_plugin = false
158 # Override this in a local.properties file
159 jalviewjs_eclipse_root = ~/buildtools/eclipse/jee-2019-09
160
161 jalviewjs_eclipse_dropins_dir = utils/jalviewjs/eclipse/dropins
162 jalviewjs_swingjs_zip = swingjs/SwingJS-site.zip
163 jalviewjs_j2s_plugin = swingjs/net.sf.j2s.core.jar
164 jalviewjs_libjs_dir = utils/jalviewjs/libjs
165 jalviewjs_site_resource_dir = utils/jalviewjs/site-resources
166 jalviewjs_classlists_dir = utils/jalviewjs/classlists
167 jalviewjs_classlist_jalview = utils/jalviewjs/_j2sclasslist.txt
168 jalviewjs_j2s_settings = .j2s
169 #jalviewjs_eclipse_workspace = ~/tmp/eclipse-workspace
170 # these 3 files/dirs found in build/jalviewjs
171 jalviewjs_eclipse_tmp_dropins_dir = eclipse_dropins
172 jalviewjs_eclipse_workspace_location_file = eclipse_workspace_location
173 jalviewjs_site_dir = site
174 # these dirs are subdirs of the site dir
175 jalviewjs_swingjs_subdir = swingjs
176 jalviewjs_j2s_subdir = swingjs/j2s
177 jalviewjs_js_subdir = swingjs/js
178 #jalviewjs_eclipseBuildArg = build
179 jalviewjs_eclipse_build_arg = cleanBuild
180 jalviewjs_server_port = 9001
181 jalviewjs_server_wait = 30
182 jalviewjs_server_resource = /jalview_bin_Jalview.html
183 jalviewjs_core_name = _jalview
184 jalviewjs_name = JalviewJS
185 jalviewjs_core_key = core
186 #jalviewjs_core_key = preloadCore
187
188 j2s.compiler.status = enable
189 #j2s.site.directory = null ## site defined from buildDir+'/jalviewjs/'+jalviewjs_site_dir
190 #j2s.log.methods.declared = j2s_methods_declared.log
191 #j2s.log.methods.called = j2s_methods_called.log
192 #a semicolon-separated list of package-level file paths to be excluded
193 j2s.excluded.paths = test;testng;util
194 #j2s.include.tests = true
195 #j2s.testing = null
196 #j2s.compiler.nonqualified.packages = null
197 #j2s.compiler.nonqualified.classes = null
198 #j2s.compiler.mode = debug
199 #a semicolon-separated list of package (foo.) or class (foo.bar) replacements to be made 
200 j2s.class.replacements = org.apache.log4j.->jalview.javascript.log4j.
201 j2s.template.html = utils/jalviewjs/template.html
202 j2s_coretemplate_html = utils/jalviewjs/coretemplate.html
203 #output file name for logging methods declared - delete the file to regenerate a listing 
204 #j2s.prop.j2s.log.methods.declared=swingjs/methodsDeclared_csv
205 #output file name for logging methods called - delete the file to regenerate a listing
206 #j2s.prop.j2s.log.methods_called=swingjs/methodsCalled_csv
207 #if set, every instance of methods called will be logged
208 #otherwise, only the first call to a method will be logged 
209 #output will be comma-separated: called method,caller class 
210 #j2s.prop.j2s.log.all.calls=true
211
212 jalviewjs_j2s_transpile_stdout = j2s-transpile.out
213 #jalviewjs_j2s_stderr = j2s-transpile.err # all going into out
214 jalviewjs_j2s_to_console = true
215 jalviewjs_j2s_closure_stdout = j2s-closure.out
216
217
218 testp=gradle.properties