Merge branch 'bug/JAL-3760_protsTreatedAsNucleotides' into releases/Release_2_11_1_Branch
[jalview.git] / gradle.properties
1 # Convention for properties.  Read from gradle.properties, use lower_case_underlines for property names.
2 # For properties set within build.gradle, use camelCaseNoSpace.
3 #
4
5 jalviewDir = .
6
7 #JAVA_VERSION = 1.8
8 JAVA_VERSION = 11
9
10 source_dir = src
11 #source_dir = utils/jalviewjs/test/src
12
13 test_source_dir = test
14 #test_source_dir = utils/jalviewjs/test/test
15
16 # JALVIEW_VERSION now being set by logic in build.gradle defaulting to looking at jalview.version property in RELEASE file
17 #JALVIEW_VERSION = DEVELOPMENT
18 INSTALLATION = Source
19 jalview_keystore = keys/.keystore
20 jalview_keystore.pass = alignmentisfun
21 jalview_key = jalview
22 jalview_key.pass = alignmentisfun
23 jalview_tsaurl =
24 proxyPort = 80
25 proxyHost = sqid
26 jalview_keyalg = SHA1withRSA
27 jalview_keydig = SHA1
28
29 testng_groups = Functional
30 testng_excluded_groups = 
31
32 j8libDir = j8lib
33 j11libDir = j11lib
34 resource_dir = resources
35 help_parent_dir = help
36 help_dir = help
37 doc_dir = doc
38 classes_dir = classes
39 clover = false
40 clover_classes_dir = clover-classes
41 clover_sources_instr_dir = clover-instr
42 clover_report_dir = clover-report
43 clover_lib_dir = utils/clover/lib
44 cloverreport_mem = 2g
45 cloverreport_jvmargs = -Dfile.encoding=UTF-8
46 cloverreport_html_options = 
47 cloverreport_xml_options =
48 package_dir = dist
49 ARCHIVEDIR =
50
51 test_output_dir = tests
52 utils_dir = utils
53
54 build_properties_file = .build_properties
55 application_codebase = *.jalview.org
56 main_class = jalview.bin.Jalview
57 shadow_jar_main_class = jalview.bin.Launcher
58
59 jalview_name = Jalview
60
61 getdown_local = false
62 getdown_website_dir = getdown/website
63 getdown_resource_dir = resource
64 #getdown_j11lib_dir = j11lib
65 getdown_files_dir = getdown/files
66 getdown_lib_dir = getdown/lib
67 getdown_launcher = getdown-launcher.jar
68 getdown_launcher_local = getdown-launcher-local.jar
69 getdown_launcher_new = getdown-launcher-new.jar
70 getdown_core = getdown/lib/getdown-core.jar
71 getdown_build_properties = build_properties
72 getdown_launch_jvl_name = channel_launch
73 getdown_txt_allow_offline = true
74 getdown_txt_max_concurrent_downloads = 10
75 # now got better defaults when not set
76 #getdown_txt_jalview.jvmmempc = 90
77 # now got better defaults when not set
78 #getdown_txt_jalview.jvmmemmax = 32G
79 getdown_txt_multi_jvmarg = -Dgetdownappdir=%APPDIR%
80 getdown_txt_strict_comments = true
81 getdown_txt_ui.progress_sync_before_shown = true
82 getdown_txt_ui.progress_sync_after_shown = false
83 getdown_txt_ui.keep_on_top = true
84 getdown_txt_ui.display_appbase = true
85 getdown_txt_ui.display_version = true
86 getdown_txt_ui.min_show_seconds = 6
87 getdown_txt_ui.background = FFFFFF
88 getdown_txt_ui.background_image = utils/getdown/jalview_logo_background_getdown-640x480.png
89 getdown_txt_ui.instant_background_image = utils/getdown/jalview_logo_background_getdown_instant-640x480.png
90 getdown_txt_ui.error_background = utils/getdown/jalview_logo_background_getdown_error-640x480.png
91 getdown_txt_ui.progress_image = utils/getdown/jalview_logo_background_getdown-progress.png
92 getdown_txt_ui.icon = resources/images/JalviewLogo_Huge.png
93 getdown_txt_ui.progress = 20, 440, 600, 22
94 getdown_txt_ui.progress_bar = AAAAFF
95 getdown_txt_ui.progress_text = 000000
96 getdown_txt_ui.status = 20, 380, 600, 58
97 getdown_txt_ui.status_text = 000066
98 #getdown_txt_ui.text_shadow = FFFFFF
99 getdown_txt_ui.install_error = https://www.jalview.org/faq/getdownerror
100 getdown_txt_ui.mac_dock_icon = resources/images/jalview_logos.ico
101 getdown_alt_java8_min_version  = 01080000
102 getdown_alt_java8_max_version  = 01089999
103 getdown_alt_java11_min_version = 11000000
104 getdown_alt_java11_max_version =
105 #getdown_alt_java11_txt_multi_java_location = [windows-amd64] /getdown/jre/windows-jre11.jar,[linux-amd64] /getdown/jre/linux-jre11.tgz,[mac os x] /getdown/jre/macos-jre11.tgz
106 #getdown_alt_java8_txt_multi_java_location = [windows-amd64] /getdown/jre/windows-jre1.8.tgz,[linux-amd64] /getdown/jre/linux-jre1.8.tgz,[mac os x] /getdown/jre/macos-jre1.8.tgz
107 jre_installs_dir = ~/buildtools/jre
108
109 j8libDir = j8lib
110 j8digestonlyDir = j8digestonly
111 j11libDir = j11lib
112 j11modDir = j11mod
113 j11modules = com.sun.istack.runtime,com.sun.xml.bind,com.sun.xml.fastinfoset,com.sun.xml.streambuffer,com.sun.xml.txw2,com.sun.xml.ws.policy,java.activation,java.annotation,java.base,java.compiler,java.datatransfer,java.desktop,java.logging,java.management,java.management.rmi,java.naming,java.prefs,java.rmi,java.scripting,java.security.sasl,java.sql,java.xml,java.xml.bind,java.xml.soap,java.xml.ws,javax.jws,jdk.httpserver,jdk.jsobject,jdk.unsupported,jdk.xml.dom,org.jvnet.mimepull,org.jvnet.staxex,javax.servlet.api,java.ws.rs
114 j11digestonlyDir = j11digestonly
115
116
117 install4j_home_dir = ~/buildtools/install4j8
118 install4j_copyright_message = ...
119 install4j_bundle_id = org.jalview.jalview-desktop
120 install4j_utils_dir = utils/install4j
121 install4j_template = install4j8_template.install4j
122 install4j_info_plist_file_associations = file_associations_auto-Info_plist.xml
123 install4j_installer_file_associations = file_associations_auto-install4j8.xml
124 #install4j_DMG_uninstaller_app_files = uninstall_old_jalview_files.xml
125 install4j_build_dir = build/install4j
126 install4j_media_types = windows,macosArchive,unixArchive,unixInstaller
127 install4j_faster = false
128 install4j_application_categories = Science;Biology;Java;
129 install4j_release_win_application_id = 6595-2347-1923-0725
130
131 OSX_KEYSTORE =
132 OSX_KEYPASS =
133 JSIGN_SH = echo
134
135 pandoc_exec = /usr/local/bin/pandoc,/usr/bin/pandoc
136 dev = false
137
138 CHANNEL=LOCAL
139 getdown_channel_base = https://www.jalview.org/getdown
140 getdown_app_dir_release = release
141 getdown_app_dir_alt = alt
142 getdown_app_dir_java = jre
143 getdown_install_dir = install
144 getdown_rsync_dest = /Volumes/jalview/docroot/getdown
145 reportRsyncCommand =
146 RUNRSYNC=false
147
148 bamboo_channelbase = https://builds.jalview.org/browse
149 bamboo_planKey = 
150 bamboo_getdown_channel_suffix = /latest/artifact/shared/getdown-channel
151
152 eclipse_extra_jdt_prefs_file = utils/eclipse/org.eclipse.jdt.core.jalview.prefs
153 eclipse_project_name = jalview
154 eclipse_bin_dir = bin
155 eclipse_debug = false
156
157 # for developing in Eclipse as IDE, set this to automatically copy current swingjs/net.sf.j2s.core.jar to your dropins dir
158 jalviewjs_eclipseIDE_auto_copy_j2s_plugin = false
159 # Override this in a local.properties file
160 jalviewjs_eclipse_root = ~/buildtools/eclipse/jee-2019-09
161
162 jalviewjs_eclipse_dropins_dir = utils/jalviewjs/eclipse/dropins
163 jalviewjs_swingjs_zip = swingjs/SwingJS-site.zip
164 jalviewjs_j2s_plugin = swingjs/net.sf.j2s.core.jar
165 jalviewjs_libjs_dir = utils/jalviewjs/libjs
166 jalviewjs_site_resource_dir = utils/jalviewjs/site-resources
167 jalviewjs_classlists_dir = utils/jalviewjs/classlists
168 jalviewjs_classlist_jalview = utils/jalviewjs/_j2sclasslist.txt
169 jalviewjs_j2s_settings = .j2s
170 #jalviewjs_eclipse_workspace = ~/tmp/eclipse-workspace
171 # these 3 files/dirs found in build/jalviewjs
172 jalviewjs_eclipse_tmp_dropins_dir = eclipse_dropins
173 jalviewjs_eclipse_workspace_location_file = eclipse_workspace_location
174 jalviewjs_site_dir = site
175 # these dirs are subdirs of the site dir
176 jalviewjs_swingjs_subdir = swingjs
177 jalviewjs_j2s_subdir = swingjs/j2s
178 jalviewjs_js_subdir = swingjs/js
179 #jalviewjs_eclipseBuildArg = build
180 jalviewjs_eclipse_build_arg = cleanBuild
181 jalviewjs_server_port = 9001
182 jalviewjs_server_wait = 30
183 jalviewjs_server_resource = /jalview_bin_Jalview.html
184 jalviewjs_core_name = _jalview
185 jalviewjs_name = JalviewJS
186 jalviewjs_core_key = core
187 #jalviewjs_core_key = preloadCore
188
189 j2s.compiler.status = enable
190 #j2s.site.directory = null ## site defined from buildDir+'/jalviewjs/'+jalviewjs_site_dir
191 #j2s.log.methods.declared = j2s_methods_declared.log
192 #j2s.log.methods.called = j2s_methods_called.log
193 #a semicolon-separated list of package-level file paths to be excluded
194 j2s.excluded.paths = test;testng;util
195 #j2s.include.tests = true
196 #j2s.testing = null
197 #j2s.compiler.nonqualified.packages = null
198 #j2s.compiler.nonqualified.classes = null
199 #j2s.compiler.mode = debug
200 #a semicolon-separated list of package (foo.) or class (foo.bar) replacements to be made 
201 j2s.class.replacements = org.apache.log4j.->jalview.javascript.log4j.
202 j2s.template.html = utils/jalviewjs/template.html
203 j2s_coretemplate_html = utils/jalviewjs/coretemplate.html
204 #output file name for logging methods declared - delete the file to regenerate a listing 
205 #j2s.prop.j2s.log.methods.declared=swingjs/methodsDeclared_csv
206 #output file name for logging methods called - delete the file to regenerate a listing
207 #j2s.prop.j2s.log.methods_called=swingjs/methodsCalled_csv
208 #if set, every instance of methods called will be logged
209 #otherwise, only the first call to a method will be logged 
210 #output will be comma-separated: called method,caller class 
211 #j2s.prop.j2s.log.all.calls=true
212
213 jalviewjs_j2s_transpile_stdout = j2s-transpile.out
214 #jalviewjs_j2s_stderr = j2s-transpile.err # all going into out
215 jalviewjs_j2s_to_console = true
216 jalviewjs_j2s_closure_stdout = j2s-closure.out
217
218
219 testp=gradle.properties