JAL-958 Normalised logo feature todo * add gui switches in applet for normalised logo display * add flags for normalised logo display to AnnotationFile and Jalview Project * add preference for application * consider rationalising flag model for N types of consensus/logo calculation methods JAL-976 JABAWS 2 services todo * document aacons * allow aacons calculation setting to be restored * fix aacon service description bug - each calculation should be an option. * test store/recall of settings for AACons service * decide where AACons job stats should be stored (this is a report for the current view, rather than alignment as a whole) * make disorder calculation more intelligent -* only calculate for sequences where no calculation has already been performed ? -* if parameters are changed, old features should be replaced with new ones ..? calcId for features, too ?