jalview/ext/jmol/JalviewJmolBinding.js
jalview/ext/jmol/JmolCommands.js
jalview/ext/jmol/JmolParser.js
jalview/gui/AppJmol.js
jalview/gui/AppJmolBinding.js
jalview/gui/StructureViewerBase.js
jalview/io/StructureFile.js
jalview/jbgui/GStructureViewer.js
jalview/renderer/seqfeatures/FeatureColourFinder.js
jalview/structure/StructureListener.js
jalview/structure/StructureMapping.js
jalview/structure/StructureMappingcommandSet.js
jalview/structures/models/AAStructureBindingModel.js
jalview/structures/models/SequenceStructureBindingModel.js
jalview/util/CaseInsensitiveString.js
jalview/util/HttpUtils.js
jalview/util/MapList.js
jalview/ws/dbsources/EbiFileRetrievedProxy.js
jalview/ws/dbsources/Pdb.js
jalview/ws/seqfetcher/DbSourceProxy.js
jalview/ws/seqfetcher/DbSourceProxyImpl.js
jalview/ws/seqfetcher/DbSourceProxyRoot.js
java/awt/font/TextAttribute.js
java/awt/image/ImageProducer.js
java/awt/image/PixelGrabber.js
java/io/BufferedWriter.js
java/io/FilterOutputStream.js
java/io/OutputStream.js
java/io/OutputStreamWriter.js
java/io/PrintStream.js
java/io/StringWriter.js
java/io/Writer.js
javajs/api/BytePoster.js
javajs/api/GenericOutputChannel.js
javajs/awt/Font.js
javajs/awt/FontManager.js
javajs/util/A4.js
javajs/util/BS.js
javajs/util/CU.js
javajs/util/DF.js
javajs/util/LimitedLineReader.js
javajs/util/M3.js
javajs/util/M34.js
javajs/util/M4.js
javajs/util/Measure.js
javajs/util/OC.js
javajs/util/P3.js
javajs/util/P3i.js
javajs/util/P4.js
javajs/util/T3.js
javajs/util/T3i.js
javajs/util/T4.js
javajs/util/V3.js
mc_view/Atom.js
mc_view/Bond.js
mc_view/PDBChain.js
mc_view/Residue.js
org/jmol/adapter/readers/pdb/PdbReader.js
org/jmol/adapter/smarter/Atom.js
org/jmol/adapter/smarter/AtomIterator.js
org/jmol/adapter/smarter/AtomSetCollection.js
org/jmol/adapter/smarter/AtomSetCollectionReader.js
org/jmol/adapter/smarter/AtomSetObject.js
org/jmol/adapter/smarter/Bond.js
org/jmol/adapter/smarter/BondIterator.js
org/jmol/adapter/smarter/Resolver.js
org/jmol/adapter/smarter/SmarterJmolAdapter.js
org/jmol/adapter/smarter/Structure.js
org/jmol/api/AtomIndexIterator.js
org/jmol/api/EventManager.js
org/jmol/api/GenericFileInterface.js
org/jmol/api/GenericMouseInterface.js
org/jmol/api/GenericPlatform.js
org/jmol/api/Interface.js
org/jmol/api/JmolAdapter.js
org/jmol/api/JmolAdapterAtomIterator.js
org/jmol/api/JmolAdapterBondIterator.js
org/jmol/api/JmolCallbackListener.js
org/jmol/api/JmolGraphicsInterface.js
org/jmol/api/JmolPropertyManager.js
org/jmol/api/JmolRendererInterface.js
org/jmol/api/JmolRepaintManager.js
org/jmol/api/JmolScriptEvaluator.js
org/jmol/api/JmolScriptFunction.js
org/jmol/api/JmolScriptManager.js
org/jmol/api/JmolSelectionListener.js
org/jmol/api/JmolStatusListener.js
org/jmol/api/JmolViewer.js
org/jmol/api/PlatformViewer.js
org/jmol/api/Translator.js
org/jmol/atomdata/AtomDataServer.js
org/jmol/atomdata/RadiusData.js
org/jmol/awt/AwtFile.js
org/jmol/awt/AwtFont.js
org/jmol/awt/Display.js
org/jmol/awt/Image.js
org/jmol/awt/Mouse.js
org/jmol/awt/Platform.js
org/jmol/bspt/Bspf.js
org/jmol/bspt/Bspt.js
org/jmol/bspt/CubeIterator.js
org/jmol/bspt/Element.js
org/jmol/bspt/Leaf.js
org/jmol/bspt/Node.js
org/jmol/c/CBK.js
org/jmol/c/FIL.js
org/jmol/c/PAL.js
org/jmol/c/STER.js
org/jmol/c/STR.js
org/jmol/c/VDW.js
org/jmol/g3d/CylinderRenderer.js
org/jmol/g3d/G3DRenderer.js
org/jmol/g3d/Graphics3D.js
org/jmol/g3d/HermiteRenderer.js
org/jmol/g3d/LineRenderer.js
org/jmol/g3d/Pixelator.js
org/jmol/g3d/Platform3D.js
org/jmol/g3d/PrecisionRenderer.js
org/jmol/g3d/SphereRenderer.js
org/jmol/g3d/TextRenderer.js
org/jmol/g3d/TextString.js
org/jmol/g3d/TriangleRenderer.js
org/jmol/i18n/GT.js
org/jmol/i18n/Language.js
org/jmol/i18n/Resource.js
org/jmol/io/FileReader.js
org/jmol/modelset/Atom.js
org/jmol/modelset/AtomCollection.js
org/jmol/modelset/AtomIteratorWithinModel.js
org/jmol/modelset/Bond.js
org/jmol/modelset/BondCollection.js
org/jmol/modelset/BondIterator.js
org/jmol/modelset/BondIteratorSelected.js
org/jmol/modelset/Chain.js
org/jmol/modelset/Group.js
org/jmol/modelset/Model.js
org/jmol/modelset/ModelLoader.js
org/jmol/modelset/ModelSet.js
org/jmol/modelset/Orientation.js
org/jmol/modelset/Structure.js
org/jmol/modelsetbio/AlphaMonomer.js
org/jmol/modelsetbio/AlphaPolymer.js
org/jmol/modelsetbio/BioModel.js
org/jmol/modelsetbio/BioModelSet.js
org/jmol/modelsetbio/BioPolymer.js
org/jmol/modelsetbio/BioResolver.js
org/jmol/modelsetbio/Helix.js
org/jmol/modelsetbio/Monomer.js
org/jmol/modelsetbio/ProteinStructure.js
org/jmol/render/BallsRenderer.js
org/jmol/render/FontLineShapeRenderer.js
org/jmol/render/FrankRenderer.js
org/jmol/render/RepaintManager.js
org/jmol/render/ShapeRenderer.js
org/jmol/render/SticksRenderer.js
org/jmol/renderbio/BackboneRenderer.js
org/jmol/renderbio/BioShapeRenderer.js
org/jmol/renderbio/CartoonRenderer.js
org/jmol/renderbio/RocketsRenderer.js
org/jmol/renderbio/StrandsRenderer.js
org/jmol/script/ContextToken.js
org/jmol/script/SV.js
org/jmol/script/ScriptCompiler.js
org/jmol/script/ScriptContext.js
org/jmol/script/ScriptError.js
org/jmol/script/ScriptEval.js
org/jmol/script/ScriptExpr.js
org/jmol/script/ScriptFlowContext.js
org/jmol/script/ScriptFunction.js
org/jmol/script/ScriptManager.js
org/jmol/script/ScriptMathProcessor.js
org/jmol/script/ScriptParam.js
org/jmol/script/ScriptTokenParser.js
org/jmol/script/T.js
org/jmol/scriptext/MathExt.js
org/jmol/shape/AtomShape.js
org/jmol/shape/Balls.js
org/jmol/shape/Frank.js
org/jmol/shape/Mesh.js
org/jmol/shape/Shape.js
org/jmol/shape/Sticks.js
org/jmol/shapebio/Backbone.js
org/jmol/shapebio/BioShape.js
org/jmol/shapebio/BioShapeCollection.js
org/jmol/shapebio/Cartoon.js
org/jmol/shapebio/Rockets.js
org/jmol/thread/HoverWatcherThread.js
org/jmol/thread/JmolThread.js
org/jmol/util/BSUtil.js
org/jmol/util/BoxInfo.js
org/jmol/util/C.js
org/jmol/util/ColorEncoder.js
org/jmol/util/CommandHistory.js
org/jmol/util/DefaultLogger.js
org/jmol/util/Edge.js
org/jmol/util/Elements.js
org/jmol/util/Escape.js
org/jmol/util/GData.js
org/jmol/util/Geodesic.js
org/jmol/util/Int2IntHash.js
org/jmol/util/Int2IntHashEntry.js
org/jmol/util/Logger.js
org/jmol/util/LoggerInterface.js
org/jmol/util/MeshSurface.js
org/jmol/util/Node.js
org/jmol/util/Normix.js
org/jmol/util/Point3fi.js
org/jmol/util/Rectangle.js
org/jmol/util/Rgb16.js
org/jmol/util/Shader.js
org/jmol/util/SimpleEdge.js
org/jmol/util/SimpleNode.js
org/jmol/util/TempArray.js
org/jmol/viewer/ActionManager.js
org/jmol/viewer/AnimationManager.js
org/jmol/viewer/ColorManager.js
org/jmol/viewer/FileManager.js
org/jmol/viewer/Gesture.js
org/jmol/viewer/GlobalSettings.js
org/jmol/viewer/JC.js
org/jmol/viewer/ModelManager.js
org/jmol/viewer/MotionPoint.js
org/jmol/viewer/MouseState.js
org/jmol/viewer/PropertyManager.js
org/jmol/viewer/SelectionManager.js
org/jmol/viewer/ShapeManager.js
org/jmol/viewer/StateManager.js
org/jmol/viewer/StatusManager.js
org/jmol/viewer/TransformManager.js
org/jmol/viewer/Viewer.js
org/jmol/viewer/binding/Binding.js
org/jmol/viewer/binding/JmolBinding.js
sun/awt/image/OffScreenImageSource.js
sun/font/AttributeValues.js
sun/font/EAttribute.js