Developing Jalview

• Basic Source Structure Guidelines
• The Applet and The Application - whats the difference ?
• Package Architecture
  
• Specific Development Guidelines
  • Adding new datamodel objects to Jalview
  • Adding new IO capabilities to Jalview
  • Adding new database types to Jalview
  • Working with the Jalview DAS annotation fetcher
  • Adding new analysis methods to jalview
  • Adding new web service functionality to jalview