>FER_CAPAA/1-97 Ferredoxin
>FER_CAPAN/1-144 Ferredoxin, chloroplast precursor
>FER1_SOLLC/1-144 Ferredoxin-1, chloroplast precursor
>Q93XJ9_SOLTU/1-144 Ferredoxin I precursor
>FER1_PEA/1-149 Ferredoxin-1, chloroplast precursor
>Q7XA98_TRIPR/1-152 Ferredoxin I
>FER1_MESCR/1-148 Ferredoxin-1, chloroplast precursor
>FER1_SPIOL/1-147 Ferredoxin-1, chloroplast precursor
>FER3_RAPSA/1-96 Ferredoxin, leaf L-A
>FER1_ARATH/1-148 Ferredoxin-1, chloroplast precursor
>FER_BRANA/1-96 Ferredoxin
>FER2_ARATH/1-148 Ferredoxin-2, chloroplast precursor
>Q93Z60_ARATH/1-118 At1g10960/T19D16_12
>FER1_MAIZE/1-150 Ferredoxin-1, chloroplast precursor
>O80429_MAIZE/1-140 Ferredoxin
>1A70|/1-97
* iteration 1
-MMMMMMM-M-MMMM-
-AAAAAAA-A-AAAA-
----TTAA-S-SSTA-
----TTTT-T-TTVT-
-------------L--
-------------G--
------TT-----S--
----PPAT-----P--
-SSSAAAT-A-AAR--
-VIILLLM-L-LLA--
-SSSYYSM-S-SSP--
-AGGGGGG-S-SSA--
-TTTTTA--A-AAF--
-MMMAAT--I-IIFA-
-IIIVVMM-V-VVFL-
-SSSSSSA-G-SSSS-
-TTTTTTT-T-TTSM-
-SSSSSAT-S-SSSS-
-FFFFFFF-F-FFSI-
-MLLLMAV-I-LLLL-
-PPPRRPP-R-RRRR-
-RRRTRKK-R-RRA--
-KKKQQ-P-S-QQA--
-PPPPP-Q-P-QQP--
-AAVMVTA-A-TTAA-
-VVVPPPP-P-PPPP-
-TTTMMPP-I-IITP-
-SSSSSMM-S-SSAP-
-LLLVVTM-L-LLVC-
------AA-R-RR-F-
-KKKTAAA-S-SS-S-
-PAATTLL-L-LLAS-
-IIITTPP-P-PPLP-
-PSSKTTS-S-FFPL-
-NNNATNN-A-AAAR-
-VVVFTVT-N-NNAL-
-GGGSKGG-T-TTKR-
-EEENARR-Q-QQVV-
-----F----------
-----P----------
-AAAGSAS-S-SSGA-
-LLLFGLL-L-LLIV-
-FFFLFFF-F-FFMA-
-GGGGGGG-G-GGGK-
-LLLLLLL-L-LLRP-
-KKKKKKK-K-KKSL-
-SSSTSST-S-SSAA-
-----V----------
-AGGSSSG-G-SSSA-
----LTAS-T-TTSP-
----KKSR-A-AARM-
-NRRRRR--R-RRRR-
-GNNGG---G-GG-R-
-GGGDDGG-G-GG-Q-
-KRRLLRG-R-RRRL-
-VIIAAVR-V-VVLL-
-TTTVVTM-T-TTRR-
-CCCAAAT-A-AAAA-
-MMMMMMM-M-MMQQ-
AAAAAAAAAAAAAAAA
SSSSSTAATTTTTTTA
YYYYYYYYYYYYYYYY
KKKKKKKKKKKKKNNK
VVVVVVVVVVVVVVVV
KKKKKKTTKKKKKKKT
LLLLLLLLFFFFFLLL
IIIIVIVVIIIIIIIV
TTTTTTTTTTTTTTTT
PPPPPPPPPPPPPPPP
DDEDDEETEEEEEEET
GGGGGGGGGGGGGGGG
PPPPTPKNEEEEEEEN
IIIIQQQVQLQQQVVV
EEEEEEEEEEEEEEEE
FFFFFFLFVVVVVLLF
DDEEEDEQEEEEEQQQ
CCCCCCCCCCCCCVVC
PPPPPPPPDDDEEPPP
DDDDSDDDDDDEEDDD
DNDDDDDDDDDDDDDD
VVVVVVVVVVVVVVVV
YYYYYYYYYYYYYYYY
IIIIIIIIVVVVVIII
LLLLLLLLLLLLLLLL
DDDDDDDDDDDDDDDD
QQQQHHAAAAAAAQFA
AAAAAAAAAAAAAAAA
EEEEEEEEEEEEEEEE
EEEEEEEEEEEEEEEE
AAEEVVAEAAAAADEE
GGGGGGGGGGGGGGGG
HHHHIIIIIIILLIII
DDDDDEDDDDDDDDDD
LLLLLLLLLLLLLLLL
PPPPPPPPPPPPPPPP
YYYYYYYYYYYYYYFY
SSSSSSSSSSSSSSSS
CCCCCCCCCCCCCCCC
RRRRRRRRRRRRRRRR
AAAAAAAAAAAAAAAA
GGGGGGGGGGGGGGGG
SSSSSSSSSSSSSSSS
CCCCCCCCCCCCCCCC
SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
CCCCCCCCCCCCCCCC
AAAAAAAAAAAAAAAA
GGGGGGGGGGGGGGGG
KKKKKKKKKKKKKKKK
IIVVVVVLVVVVVVVL
AATTVVTKVVVVVVVK
GGAAGNSTSSSSSSST
GGGGGGGGGGGGGGGG
AASTENSSSSFSSSSS
VVVVVVVLVVVIIVVL
DDDDDNNNDDDDDDDN
QQQQQQQQQQQQQQQQ
TTSSSEDDSSSSSSSD
DDDDDDDDDDDDDDDD
GGGGGGGQQQEQQQQQ
NNNKSSSSSSSSSSSS
FFFFFFFFFFFFFYFF
LLLLLLLLLLLLLLLL
DDDDDDDDDDDDDDND
DDEDDDDDDDDDDDDD
DDDDEEDDDEDE-GND
QQQQQQQQQQQQ-QQQ
LLEEIIIIIIIM-IVI
EEAAEEKDAGAS-AAD
EEAAAGEEEEEE-DDE
GGGGGGGGGGGG-GGG
WWFFFWWWFFFY-WWW
VVVVVVVVVVVV-VVV
LLLLLLLLLLLL-LLL
TTTTTTTTTTTT-TTT
CCCCCCCCCCCC-CCC
VVVVVVVAAAAV-HAA
AAAAAAAAAAAA-AAA
YYYYYFYYYYYY-YYY
PPPPPPPPPPPP-PPP
QQKKTTTVTTTT-TTV
SSGCSSGSSSSS-SSS
DDDDDDDDDDDD-DDD
VVVVVVVVVVVV-VVV
TTTTVTTTTTTV-VVT
IIIIIIIIIIII-III
EEEEEEEEEEEE-EEE
TTTTTTTTTTTT-TTT
HHHHHHHHHHHH-HHH
KKKKKKKKRKKK-KKK
EEEEEEEEEEEE-EEK
AAEEEEEEEEEE-EDE
EEEEDEEEDDEA-EDE
LLLLLLLLMILI-LLL
VVTTTTTTVVVM-TLT
GGAAAAAA-----G-A
-------------A--
*