Jalview 2.11.1.3

Jalview 2.11.1.3 is the third patch release in the 2.11.1 series. Critical bugs resolved in this release include:

• Find doesn't highlight all motif matches for a sequence.
• Mouse over highlighting, CDS reconstruction and problems with virtual feature popups when working with linked CDS/Protein alignments.
• Result of aligning protein sequences linked to CDS results in incorrect CDS alignment.
• Jalview installer doesn't correctly install Jalview on paths containing spaces.

For the full release notes, see the Jalview 2.11.1.3 release notes.

Known Issues

• We've had reports from a small number of windows 10 users who see a warning dialog pop up when Jalview tries to save a new version of an existing file. If you are affected by this bug and this latest version of Jalview doesn't fix it, please let us know!
• Co-located features exported and re-imported are ordered differently when shown on alignment and in tooltips. (Also affects v2.11.1.0)
• Drag and drop of alignment file onto alignment window when in a HiDPI scaled mode in Linux only works for the top left quadrant of the alignment window.