Total new objects: 3207143 count exec(ms) -------- -------- ------------------------------ ...2100182 ....-24750 undefined[] ....504006 ......2661 java.lang.StringBuilder ....436463 ......1022 java.util.HashMap.Node ....411205 .......708 jalview.datamodel.Annotation ....232907 .......323 Float ....215619 .......902 jalview.datamodel.features.FeatureStore$SearchCriterion$3 ....206107 .......370 java.awt.Color ....206007 .......387 Integer ....205602 .......863 jalview.datamodel.ResidueCount ....205602 .......427 jalview.datamodel.Profile ....172921 ......1119 java.util.ArrayList.Itr ....170025 .....-2281 Object[] ....139805 .......151 Long ....138605 .......377 swingjs.json.JSON.JSONList ....108563 .......372 java.util.HashMap ....108553 .....-1316 java.util.HashMap.Node[] ....107812 ......3263 jalview.datamodel.SequenceFeature .....79143 .......375 java.util.ArrayList .....61212 .......381 java.util.HashMap.EntryIterator .....52231 .......467 java.util.HashMap.EntrySet .....47590 .......294 swingjs.json.JSON.JSONMap .....46224 ........94 swingjs.json.JSON.JSONList.ListIterator ......7084 .......187 jalview.datamodel.features.NCNode ......3870 ........10 jalview.analysis.AlignmentUtils.DnaVariant ......3051 ........30 java.awt.Dimension ......2153 ........14 java.beans.PropertyChangeEvent ......1567 .........4 jalview.datamodel.SequenceCursor ......1356 .........6 java.util.LinkedHashMap.Entry ......1329 ........46 jalview.datamodel.features.NCList ......1290 .......-16 java.util.ArrayList[] .......687 .........4 java.util.Hashtable.Entry .......684 .........5 jalview.datamodel.DBRefEntry .......505 .........6 java.util.TreeMap.ValueIterator .......479 .........2 javax.swing.event.EventListenerList .......449 .........6 java.util.ArrayList.SubList .......449 .........4 java.util.HashSet .......449 .........4 java.util.ArrayList$SubList$1 .......444 .........1 jalview.datamodel.HiddenCursorPosition .......402 ........-5 java.lang.Class[] .......383 .........4 javajs.util.Lst .......346 .........1 java.awt.geom.AffineTransform .......346 .........1 java.awt.BasicStroke .......290 ........-4 java.beans.PropertyChangeListener[] .......287 .........3 java.util.Hashtable.Enumerator .......280 .........5 java.awt.Rectangle .......276 .........4 java.util.TreeMap.EntryIterator .......274 ........-5 java.awt.Component[] .......261 .........2 java.beans.PropertyChangeSupport .......261 .........1 java.beans.PropertyChangeSupport.PropertyChangeListenerMap .......226 .........1 java.util.Collections.UnmodifiableSet .......219 .........0 com.stevesoft.pat.StrPos .......206 .........1 java.awt.AWTEventMulticaster .......200 .........2 java.util.HashMap.KeySet .......200 .........2 java.util.HashMap.KeyIterator .......198 .........4 javax.swing.plaf.ComponentInputMapUIResource .......187 .........2 java.util.Arrays.ArrayList .......182 .........2 java.awt.event.ContainerEvent .......176 ........-3 java.util.Hashtable.Entry[] .......173 .........1 javax.swing.ActionMap .......173 ........-2 javax.swing.KeyStroke[] .......171 .........2 java.awt.Insets .......169 .........2 javax.swing.JMenuItem.MenuItemFocusListener .......169 .........2 javax.swing.AbstractButton.Handler .......169 .........1 swingjs.plaf.ButtonListener .......154 .........1 javax.swing.KeyboardManager.ComponentKeyStrokePair .......138 .........1 jalview.datamodel.PDBEntry .......136 .........1 java.util.Vector.Itr .......130 .........1 javajs.util.SB .......120 .........2 java.io.BufferedInputStream .......120 .........1 java.io.ByteArrayInputStream .......116 .........2 javax.swing.DefaultButtonModel .......112 .........2 java.lang.StringBuffer .......108 .........3 java.awt.EventDispatchThread$1 .......100 .........1 jalview.datamodel.features.FeatureStore$SearchCriterion$2 ........99 .........1 javax.swing.event.ChangeEvent ........94 .......514 javax.swing.JMenuItem ........91 .........2 java.awt.event.MouseEvent ........88 .........2 java.util.Hashtable ........88 .........0 java.util.TreeMap.Entry ........77 .........0 javax.swing.ArrayTable ........72 .........2 jalview.datamodel.features.FeatureStore ........72 .........1 java.util.TreeMap ........69 ........-1 java.util.concurrent.ConcurrentHashMap.HashEntry[] ........67 .......277 jalview.datamodel.Sequence ........67 ........18 jalview.datamodel.features.SequenceFeatures ........66 .........2 java.net.URL ........64 .........1 javajs.util.AjaxURLConnection ........64 .........0 java.util.concurrent.ConcurrentHashMap.Segment ........63 ........-1 jalview.datamodel.SequenceGroup[] ........60 .........2 java.util.Collections$UnmodifiableCollection$1 ........60 .........0 javax.swing.SizeRequirements ........57 .........2 java.awt.EventDispatchThread ........57 .........1 java.awt.EventDispatchThread.HierarchyEventFilter ........54 .........3 swingjs.json.JSON.JSONReader ........53 .........1 javax.swing.JToggleButton.ToggleButtonModel ........53 .........1 java.util.ArrayList.ListItr ........53 ........-1 swingjs.api.js.DOMNode[] ........51 .........0 java.awt.EventQueueItem ........51 ........-1 jalview.datamodel.SequenceI[] ........44 .........0 jalview.util.LinkedIdentityHashSet.IdentityWrapper ........39 .........4 jalview.datamodel.HiddenColumnsCursor ........38 .........0 java.lang.StackTraceElement ........35 ........90 javax.swing.JCheckBoxMenuItem ........34 .........5 jalview.util.MapList ........33 .........2 jalview.ext.ensembl.EnsemblXref ........33 .........1 java.util.StringTokenizer ........33 .........1 jalview.datamodel.Sequence.DBModList ........33 .........0 jalview.renderer.ScaleRenderer.ScaleMark ........32 .........0 java.util.Collections.SynchronizedRandomAccessList ........31 .........0 java.lang.reflect.Constructor ........31 .........0 java.awt.Point ........31 .........0 com.stevesoft.pat.oneChar ........30 .........0 javax.swing.KeyStroke ........30 .........0 javax.swing.ComponentInputMap ........28 .........0 com.stevesoft.pat.patInt ........27 .........0 java.util.Vector ........24 .........1 javax.swing.DefaultSingleSelectionModel ........23 .........1 java.util.SubList$1 ........23 .........0 java.util.TreeMap.Values ........23 .........0 java.util.TreeMap.EntrySet ........23 .........0 java.util.AbstractList.ListItr ........23 .........0 jalview.datamodel.Mapping ........22 .........8 javax.swing.JPopupMenu ........22 .........5 javax.swing.JPopupMenu.Separator ........22 .........1 javax.swing.JMenu.MenuChangeListener ........22 .........1 java.util.TimSort ........22 .........1 java.util.RandomAccessSubList ........22 .........0 swingjs.plaf.JSPopupMenuUI.JSMenuKeyListener ........22 .........0 javax.swing.JMenu.WinListener ........21 ........16 javax.swing.JMenu ........21 .........1 jalview.ext.ensembl.EnsemblProtein ........21 .........1 jalview.ext.ensembl.EnsemblCdna ........20 .........0 java.awt.FlowLayout ........18 ........98 javax.swing.JRadioButtonMenuItem ........18 .........0 java.util.Formatter.Flags ........18 .........0 java.awt.event.ItemEvent ........18 .........0 java.awt.event.InvocationEvent ........18 .........0 java.awt.BorderLayout ........16 .........0 jalview.datamodel.features.FeatureAttributes.AttributeData ........15 .........5 javax.swing.JPanel ........15 .........0 javax.swing.JComponent$2 ........14 .......183 jalview.datamodel.Alignment ........14 .........8 jalview.datamodel.HiddenColumns ........14 .........1 java.util.LinkedList.ListItr ........14 .........1 jalview.schemes.JalviewColourScheme ........14 .........0 jalview.gui.ColourMenuHelper$3 ........14 .........0 jalview.datamodel.HiddenSequences ........13 .........1 java.util.LinkedHashMap ........13 .........1 jalview.util.ReverseListIterator ........12 .........0 java.awt.AlphaComposite ........11 .........0 jalview.jbgui.GAlignFrame$1 ........10 .........0 java.util.BitSet ........10 .........0 java.awt.geom.Rectangle2D.Float ........10 .........0 java.awt.Color[] .........9 .........1 java.util.LinkedHashMap.LinkedEntrySet .........9 .........0 java.util.LinkedHashMap.LinkedEntryIterator .........8 .........1 java.util.Formatter.FormatSpecifier .........8 .........0 java.util.Formatter.FixedString .........8 .........0 java.awt.Font .........8 .........0 com.stevesoft.pat.Pthings .........7 .........0 javax.swing.text.Segment .........7 .........0 java.util.concurrent.ConcurrentHashMap.HashEntry .........7 .........0 java.awt.event.ComponentEvent .........7 .........0 com.stevesoft.pat.Bracket .........6 .........0 swingjs.JSFontMetrics .........6 .........0 javax.swing.SizeRequirements[] .........6 .........0 javax.swing.DefaultBoundedRangeModel .........6 .........0 java.util.Formatter.FormatString[] .........6 .........0 java.util.AbstractList.Itr .........6 .........0 jalview.datamodel.Range .........6 .........0 com.stevesoft.pat.SubMark .........6 .........0 com.stevesoft.pat.Range .........6 .........0 com.stevesoft.pat.OrMark .........6 .........0 com.stevesoft.pat.FastMulti .........5 .........1 swingjs.JSGraphics2D .........5 .........0 sun.java2d.StateTrackableDelegate .........5 .........0 javax.swing.event.InternalFrameEvent .........5 .........0 java.awt.RenderingHints .........5 .........0 jalview.renderer.ResidueShader .........5 .........0 Boolean .........4 .........2 javax.swing.JLabel .........4 .........1 java.util.concurrent.ConcurrentHashMap .........4 .........1 jalview.analysis.AnnotationSorter .........4 .........0 sun.java2d.StateTrackable.State .........4 .........0 javax.swing.JScrollBar.ModelListener .........4 .........0 java.util.concurrent.ConcurrentHashMap.Segment[] .........4 .........0 java.awt.geom.RectIterator .........4 .........0 java.awt.event.AdjustmentEvent .........4 .........0 jalview.ext.ensembl.EnsemblSeqProxy.EnsemblSeqType .........4 .........0 jalview.analysis.AnnotationSorter$3 .........4 .........0 jalview.analysis.AnnotationSorter$2 .........4 .........0 jalview.analysis.AnnotationSorter$1 .........4 .........0 com.stevesoft.pat.End .........4 ........-2 jalview.datamodel.Annotation[] .........3 ........81 java.awt.image.BufferedImage .........3 .........9 java.awt.image.DataBufferInt .........3 .........5 java.awt.image.DirectColorModel .........3 .........0 swingjs.JSToolkit$1 .........3 .........0 sun.font.FontDesignMetrics.KeyReference .........3 .........0 sun.font.FontDesignMetrics .........3 .........0 javax.swing.ButtonGroup .........3 .........0 java.util.regex.Matcher .........3 .........0 java.util.Collections.SynchronizedSet .........3 .........0 java.awt.image.SinglePixelPackedSampleModel .........3 .........0 java.awt.GridLayout .........3 .........0 jalview.schemes.NucleotideColourScheme .........3 .........0 jalview.renderer.ScaleRenderer .........3 .........0 jalview.gui.AnnotationPanel.DragMode .........3 .........0 jalview.datamodel.features.FeatureAttributes.Datatype .........3 .........0 jalview.datamodel.VisibleContigsIterator .........3 .........0 jalview.datamodel.StartRegionIterator .........3 .........0 jalview.analysis.AnnotationSorter.SequenceAnnotationOrder .........2 .........8 javax.swing.JScrollBar .........2 .........7 javax.swing.JScrollPane.ScrollBar .........2 .........7 javax.swing.JProgressBar .........2 .........2 java.lang.IndexOutOfBoundsException .........2 .........2 com.stevesoft.pat.Regex .........2 .........1 jalview.datamodel.AlignmentAnnotation .........2 .........0 javax.swing.text.AbstractDocument.DefaultDocumentEvent .........2 .........0 javax.swing.event.UndoableEditEvent .........2 .........0 javax.swing.border.LineBorder .........2 .........0 javax.swing.JProgressBar.ModelListener .........2 .........0 java.util.LinkedHashMap.LinkedValues .........2 .........0 java.util.LinkedHashMap.LinkedValueIterator .........2 .........0 java.util.IdentityHashMap.KeyIterator .........2 .........0 java.util.Hashtable.KeySet .........2 .........0 java.util.Collections.SynchronizedCollection .........2 .........0 java.util.Collections.SingletonList .........2 .........0 java.util.Collections$1 .........2 .........0 java.util.ArrayDeque .........2 .........0 java.lang.Thread .........2 .........0 java.lang.StackTraceElement[] .........2 .........0 java.awt.geom.Path2D.Float.CopyIterator .........2 .........0 java.awt.geom.Path2D.Float .........2 .........0 java.awt.event.ActionEvent .........2 .........0 java.awt.Container .........2 .........0 jalview.util.IntRangeComparator .........2 .........0 jalview.io.SequenceAnnotationReport .........2 .........0 jalview.gui.AlignmentPanel[] .........2 .........0 jalview.ext.ensembl.EnsemblSequenceFetcher.EnsemblFeatureType[] .........2 .........0 jalview.ext.ensembl.EnsemblLookup .........2 .........0 jalview.datamodel.features.RangeComparator .........2 .........0 jalview.datamodel.SearchResults .........2 .........0 jalview.datamodel.AlignmentAnnotation[] .........2 .........0 jalview.controller.AlignViewController .........2 .........0 com.stevesoft.pat.patInf .........2 .........0 com.stevesoft.pat.Rthings .........2 .........0 com.stevesoft.pat.Or .........2 .........0 com.stevesoft.pat.NullPattern .........1 .....14506 jalview.gui.AlignFrame .........1 ......1341 jalview.gui.AlignViewport .........1 .......249 jalview.gui.AlignmentPanel .........1 ........85 jalview.gui.SeqPanel .........1 ........84 jalview.schemes.ColourSchemes .........1 ........53 jalview.gui.SeqCanvas .........1 ........26 jalview.gui.IdPanel .........1 ........13 javax.swing.JTabbedPane .........1 ........11 jalview.io.FileFormats .........1 ........10 jalview.gui.FeatureRenderer .........1 .........9 javax.swing.JScrollPane .........1 .........9 javax.swing.JInternalFrame.JDesktopIcon .........1 .........8 jalview.datamodel.ColumnSelection.IntList .........1 .........8 jalview.datamodel.ColumnSelection .........1 .........7 sun.awt.image.SunWritableRaster$1 .........1 .........7 jalview.gui.AnnotationPanel .........1 .........5 javax.swing.JToolTip .........1 .........4 jalview.jbgui.GAlignFrame$72 .........1 .........3 jalview.gui.SequenceRenderer .........1 .........3 jalview.ext.ensembl.EnsemblLookup$1 .........1 .........2 javax.swing.JRootPane .........1 .........2 jalview.io.gff.SequenceOntologyLite .........1 .........2 jalview.gui.ViewSelectionMenu .........1 .........1 swingjs.JSKeyEvent .........1 .........1 javax.swing.text.GapContent.RemoveUndo .........1 .........1 javax.swing.JViewport .........1 .........1 javax.swing.JMenuBar .........1 .........1 jalview.util.LinkedIdentityHashSet$1 .........1 .........1 jalview.gui.ScalePanel .........1 .........1 jalview.gui.IdwidthAdjuster .........1 .........1 jalview.gui.IdCanvas .........1 .........1 jalview.gui.AnnotationLabels .........1 .........0 swingjs.plaf.Resizer .........1 .........0 swingjs.plaf.LazyActionMap .........1 .........0 swingjs.plaf.JSTabbedPaneUI.TabbedPaneLayout .........1 .........0 swingjs.plaf.JSTabbedPaneUI.Handler .........1 .........0 swingjs.plaf.JSScrollPaneUI.Handler .........1 .........0 swingjs.plaf.JSMenuBarUI.Handler .........1 .........0 swingjs.plaf.JSInternalFrameUI.Handler .........1 .........0 swingjs.plaf.DefaultMenuLayout .........1 .........0 swingjs.JSMouse .........1 .........0 swingjs.JSFrameViewer .........1 .........0 sun.java2d.StateTrackable.State[] .........1 .........0 javax.swing.text.GapContent.UndoPosRef .........1 .........0 javax.swing.text.GapContent.InsertUndo .........1 .........0 javax.swing.plaf.basic.BasicBorders.MarginBorder .........1 .........0 javax.swing.ScrollPaneLayout.UIResource .........1 .........0 javax.swing.JViewport.ViewListener .........1 .........0 javax.swing.JTabbedPane.ModelListener .........1 .........0 javax.swing.JRootPane.RootLayout .........1 .........0 javax.swing.JRootPane$1 .........1 .........0 javax.swing.JLayeredPane .........1 .........0 javax.swing.JComponent.IntVector .........1 .........0 javajs.util.AjaxURLStreamHandler .........1 .........0 javajs.api.JSFunction[] .........1 .........0 java.util.concurrent.locks.ReentrantReadWriteLock.WriteLock .........1 .........0 java.util.concurrent.locks.ReentrantReadWriteLock.ReadLock .........1 .........0 java.util.concurrent.locks.ReentrantReadWriteLock .........1 .........0 java.util.concurrent.ConcurrentHashMap.KeySet .........1 .........0 java.util.concurrent.ConcurrentHashMap.KeyIterator .........1 .........0 java.util.LinkedHashMap.LinkedKeySet .........1 .........0 java.util.LinkedHashMap.LinkedKeyIterator .........1 .........0 java.util.Hashtable.ValueCollection .........1 .........0 java.util.Hashtable.EntrySet .........1 .........0 java.util.Collections.UnmodifiableRandomAccessList .........1 .........0 java.util.Collections.SynchronizedMap .........1 .........0 java.util.Collections.EmptyIterator .........1 .........0 java.util.Collections.EmptyEnumeration .........1 .........0 java.lang.Thread[] .........1 .........0 java.awt.event.WindowEvent .........1 .........0 java.awt.event.FocusEvent .........1 .........0 java.awt.dnd.DropTargetContext .........1 .........0 java.awt.dnd.DropTarget .........1 .........0 java.awt.color.ColorSpace .........1 .........0 java.awt.Rectangle[] .........1 .........0 java.awt.LightweightDispatcher .........1 .........0 jalview.workers.ConsensusThread .........1 .........0 jalview.workers.AlignCalcManager .........1 .........0 jalview.viewmodel.styles.ViewStyle .........1 .........0 jalview.viewmodel.seqfeatures.FeaturesDisplayed .........1 .........0 jalview.viewmodel.ViewportRanges .........1 .........0 jalview.util.LinkedIdentityHashSet .........1 .........0 jalview.schemes.JalviewColourScheme[] .........1 .........0 jalview.schemes.Consensus[] .........1 .........0 jalview.renderer.ResidueColourFinder .........1 .........0 jalview.renderer.AnnotationRenderer .........1 .........0 jalview.jbgui.GAlignFrame$99 .........1 .........0 jalview.jbgui.GAlignFrame$98 .........1 .........0 jalview.jbgui.GAlignFrame$97 .........1 .........0 jalview.jbgui.GAlignFrame$96 .........1 .........0 jalview.jbgui.GAlignFrame$95 .........1 .........0 jalview.jbgui.GAlignFrame$94 .........1 .........0 jalview.jbgui.GAlignFrame$93 .........1 .........0 jalview.jbgui.GAlignFrame$92 .........1 .........0 jalview.jbgui.GAlignFrame$91 .........1 .........0 jalview.jbgui.GAlignFrame$90 .........1 .........0 jalview.jbgui.GAlignFrame$9 .........1 .........0 jalview.jbgui.GAlignFrame$89 .........1 .........0 jalview.jbgui.GAlignFrame$88 .........1 .........0 jalview.jbgui.GAlignFrame$87 .........1 .........0 jalview.jbgui.GAlignFrame$86 .........1 .........0 jalview.jbgui.GAlignFrame$85 .........1 .........0 jalview.jbgui.GAlignFrame$84 .........1 .........0 jalview.jbgui.GAlignFrame$83 .........1 .........0 jalview.jbgui.GAlignFrame$82 .........1 .........0 jalview.jbgui.GAlignFrame$81 .........1 .........0 jalview.jbgui.GAlignFrame$80 .........1 .........0 jalview.jbgui.GAlignFrame$8 .........1 .........0 jalview.jbgui.GAlignFrame$79 .........1 .........0 jalview.jbgui.GAlignFrame$78 .........1 .........0 jalview.jbgui.GAlignFrame$77 .........1 .........0 jalview.jbgui.GAlignFrame$76 .........1 .........0 jalview.jbgui.GAlignFrame$75 .........1 .........0 jalview.jbgui.GAlignFrame$74 .........1 .........0 jalview.jbgui.GAlignFrame$73 .........1 .........0 jalview.jbgui.GAlignFrame$71 .........1 .........0 jalview.jbgui.GAlignFrame$70 .........1 .........0 jalview.jbgui.GAlignFrame$7 .........1 .........0 jalview.jbgui.GAlignFrame$69 .........1 .........0 jalview.jbgui.GAlignFrame$68 .........1 .........0 jalview.jbgui.GAlignFrame$67 .........1 .........0 jalview.jbgui.GAlignFrame$66 .........1 .........0 jalview.jbgui.GAlignFrame$65 .........1 .........0 jalview.jbgui.GAlignFrame$64 .........1 .........0 jalview.jbgui.GAlignFrame$63 .........1 .........0 jalview.jbgui.GAlignFrame$62 .........1 .........0 jalview.jbgui.GAlignFrame$61 .........1 .........0 jalview.jbgui.GAlignFrame$60 .........1 .........0 jalview.jbgui.GAlignFrame$6 .........1 .........0 jalview.jbgui.GAlignFrame$59 .........1 .........0 jalview.jbgui.GAlignFrame$58 .........1 .........0 jalview.jbgui.GAlignFrame$57 .........1 .........0 jalview.jbgui.GAlignFrame$56 .........1 .........0 jalview.jbgui.GAlignFrame$55 .........1 .........0 jalview.jbgui.GAlignFrame$54 .........1 .........0 jalview.jbgui.GAlignFrame$53 .........1 .........0 jalview.jbgui.GAlignFrame$52 .........1 .........0 jalview.jbgui.GAlignFrame$51 .........1 .........0 jalview.jbgui.GAlignFrame$50 .........1 .........0 jalview.jbgui.GAlignFrame$5 .........1 .........0 jalview.jbgui.GAlignFrame$49 .........1 .........0 jalview.jbgui.GAlignFrame$48 .........1 .........0 jalview.jbgui.GAlignFrame$47 .........1 .........0 jalview.jbgui.GAlignFrame$46 .........1 .........0 jalview.jbgui.GAlignFrame$45 .........1 .........0 jalview.jbgui.GAlignFrame$44 .........1 .........0 jalview.jbgui.GAlignFrame$43 .........1 .........0 jalview.jbgui.GAlignFrame$42 .........1 .........0 jalview.jbgui.GAlignFrame$41 .........1 .........0 jalview.jbgui.GAlignFrame$40 .........1 .........0 jalview.jbgui.GAlignFrame$4 .........1 .........0 jalview.jbgui.GAlignFrame$39 .........1 .........0 jalview.jbgui.GAlignFrame$38 .........1 .........0 jalview.jbgui.GAlignFrame$37 .........1 .........0 jalview.jbgui.GAlignFrame$36 .........1 .........0 jalview.jbgui.GAlignFrame$35 .........1 .........0 jalview.jbgui.GAlignFrame$34 .........1 .........0 jalview.jbgui.GAlignFrame$33 .........1 .........0 jalview.jbgui.GAlignFrame$32 .........1 .........0 jalview.jbgui.GAlignFrame$31 .........1 .........0 jalview.jbgui.GAlignFrame$30 .........1 .........0 jalview.jbgui.GAlignFrame$3 .........1 .........0 jalview.jbgui.GAlignFrame$29 .........1 .........0 jalview.jbgui.GAlignFrame$28 .........1 .........0 jalview.jbgui.GAlignFrame$27 .........1 .........0 jalview.jbgui.GAlignFrame$26 .........1 .........0 jalview.jbgui.GAlignFrame$25 .........1 .........0 jalview.jbgui.GAlignFrame$24 .........1 .........0 jalview.jbgui.GAlignFrame$23 .........1 .........0 jalview.jbgui.GAlignFrame$22 .........1 .........0 jalview.jbgui.GAlignFrame$21 .........1 .........0 jalview.jbgui.GAlignFrame$20 .........1 .........0 jalview.jbgui.GAlignFrame$2 .........1 .........0 jalview.jbgui.GAlignFrame$19 .........1 .........0 jalview.jbgui.GAlignFrame$18 .........1 .........0 jalview.jbgui.GAlignFrame$17 .........1 .........0 jalview.jbgui.GAlignFrame$16 .........1 .........0 jalview.jbgui.GAlignFrame$15 .........1 .........0 jalview.jbgui.GAlignFrame$14 .........1 .........0 jalview.jbgui.GAlignFrame$13 .........1 .........0 jalview.jbgui.GAlignFrame$121 .........1 .........0 jalview.jbgui.GAlignFrame$120 .........1 .........0 jalview.jbgui.GAlignFrame$12 .........1 .........0 jalview.jbgui.GAlignFrame$119 .........1 .........0 jalview.jbgui.GAlignFrame$118 .........1 .........0 jalview.jbgui.GAlignFrame$117 .........1 .........0 jalview.jbgui.GAlignFrame$116 .........1 .........0 jalview.jbgui.GAlignFrame$115 .........1 .........0 jalview.jbgui.GAlignFrame$114 .........1 .........0 jalview.jbgui.GAlignFrame$113 .........1 .........0 jalview.jbgui.GAlignFrame$112 .........1 .........0 jalview.jbgui.GAlignFrame$111 .........1 .........0 jalview.jbgui.GAlignFrame$110 .........1 .........0 jalview.jbgui.GAlignFrame$11 .........1 .........0 jalview.jbgui.GAlignFrame$109 .........1 .........0 jalview.jbgui.GAlignFrame$108 .........1 .........0 jalview.jbgui.GAlignFrame$107 .........1 .........0 jalview.jbgui.GAlignFrame$106 .........1 .........0 jalview.jbgui.GAlignFrame$105 .........1 .........0 jalview.jbgui.GAlignFrame$104 .........1 .........0 jalview.jbgui.GAlignFrame$103 .........1 .........0 jalview.jbgui.GAlignFrame$102 .........1 .........0 jalview.jbgui.GAlignFrame$101 .........1 .........0 jalview.jbgui.GAlignFrame$100 .........1 .........0 jalview.jbgui.GAlignFrame$10 .........1 .........0 jalview.io.SequenceAnnotationReport$1 .........1 .........0 jalview.io.FileFormat[] .........1 .........0 jalview.io.FileFormat$9 .........1 .........0 jalview.io.FileFormat$8 .........1 .........0 jalview.io.FileFormat$7 .........1 .........0 jalview.io.FileFormat$6 .........1 .........0 jalview.io.FileFormat$5 .........1 .........0 jalview.io.FileFormat$4 .........1 .........0 jalview.io.FileFormat$3 .........1 .........0 jalview.io.FileFormat$2 .........1 .........0 jalview.io.FileFormat$19 .........1 .........0 jalview.io.FileFormat$18 .........1 .........0 jalview.io.FileFormat$17 .........1 .........0 jalview.io.FileFormat$16 .........1 .........0 jalview.io.FileFormat$15 .........1 .........0 jalview.io.FileFormat$14 .........1 .........0 jalview.io.FileFormat$13 .........1 .........0 jalview.io.FileFormat$12 .........1 .........0 jalview.io.FileFormat$11 .........1 .........0 jalview.io.FileFormat$10 .........1 .........0 jalview.io.FileFormat$1 .........1 .........0 jalview.gui.ViewSelectionMenu$1 .........1 .........0 jalview.gui.ProgressBar .........1 .........0 jalview.gui.Desktop$13 .........1 .........0 jalview.gui.Desktop$12 .........1 .........0 jalview.gui.Desktop$11 .........1 .........0 jalview.gui.ColourMenuHelper$4 .........1 .........0 jalview.gui.ColourMenuHelper$1 .........1 .........0 jalview.gui.AnnotationPanel.DragMode[] .........1 .........0 jalview.gui.AlignmentPanel$2 .........1 .........0 jalview.gui.AlignmentPanel$1 .........1 .........0 jalview.gui.AlignFrame$5 .........1 .........0 jalview.gui.AlignFrame$4 .........1 .........0 jalview.gui.AlignFrame$3 .........1 .........0 jalview.gui.AlignFrame$20 .........1 .........0 jalview.gui.AlignFrame$2 .........1 .........0 jalview.gui.AlignFrame$1 .........1 .........0 jalview.ext.ensembl.EnsemblSeqProxy.EnsemblSeqType[] .........1 .........0 jalview.ext.ensembl.EnsemblGene$1$2 .........1 .........0 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