"run Clazz.startProfiling() first Total new objects: 3208398 count exec(ms) -------- -------- ------------------------------ ...2100232 ....-40921 undefined[] ....504006 .....12402 java.lang.StringBuilder ....436605 ......3414 java.util.HashMap.Node ....411205 ......2841 jalview.datamodel.Annotation ....232907 ......1122 Float ....215619 ......2440 jalview.datamodel.features.FeatureStore$SearchCriterion$3 ....206107 ......1241 java.awt.Color ....206007 ......1059 Integer ....205602 ......3110 jalview.datamodel.ResidueCount ....205602 ......1697 jalview.datamodel.Profile ....172921 ......3075 java.util.ArrayList.Itr ....170314 .....-3144 Object[] ....139806 .......457 Long ....138605 ......1033 swingjs.json.JSON.JSONList ....108563 ......1065 java.util.HashMap ....108553 .....-2025 java.util.HashMap.Node[] ....107812 ......9397 jalview.datamodel.SequenceFeature .....79143 ......1124 java.util.ArrayList .....61212 ......1423 java.util.HashMap.EntryIterator .....52231 ......1485 java.util.HashMap.EntrySet .....47591 .......876 swingjs.json.JSON.JSONMap .....46224 .......266 swingjs.json.JSON.JSONList.ListIterator ......7084 .......450 jalview.datamodel.features.NCNode ......3870 ........33 jalview.analysis.AlignmentUtils.DnaVariant ......3076 ........96 java.awt.Dimension ......2153 ........43 java.beans.PropertyChangeEvent ......1561 ........13 jalview.datamodel.SequenceCursor ......1356 ........18 java.util.LinkedHashMap.Entry ......1329 .......105 jalview.datamodel.features.NCList ......1290 .......-22 java.util.ArrayList[] .......687 .........9 java.util.Hashtable.Entry .......684 ........16 jalview.datamodel.DBRefEntry .......526 ........16 javajs.util.Lst .......505 ........21 java.util.TreeMap.ValueIterator .......479 .........9 javax.swing.event.EventListenerList .......449 ........19 java.util.HashSet .......449 .........9 java.util.ArrayList$SubList$1 .......449 .........8 java.util.ArrayList.SubList .......440 .........0 jalview.datamodel.HiddenCursorPosition .......402 ........-8 java.lang.Class[] .......346 .........4 java.awt.geom.AffineTransform .......346 .........4 java.awt.BasicStroke .......325 ........28 java.awt.EventDispatchThread$1 .......290 ........-7 java.beans.PropertyChangeListener[] .......287 ........11 java.util.Hashtable.Enumerator .......280 .........5 java.awt.Rectangle .......276 .........7 java.util.TreeMap.EntryIterator .......274 ........-7 java.awt.Component[] .......261 ........10 java.beans.PropertyChangeSupport .......261 .........6 java.beans.PropertyChangeSupport.PropertyChangeListenerMap .......226 .........3 java.util.Collections.UnmodifiableSet .......219 .........1 com.stevesoft.pat.StrPos .......206 .........5 java.awt.AWTEventMulticaster .......200 .........5 java.util.HashMap.KeySet .......200 .........5 java.util.HashMap.KeyIterator .......199 ........35 java.awt.EventDispatchThread .......199 ........17 java.awt.EventDispatchThread.HierarchyEventFilter .......198 .........2 javax.swing.plaf.ComponentInputMapUIResource .......187 .........3 java.util.Arrays.ArrayList .......182 ........14 java.awt.event.ContainerEvent .......176 ........-7 java.util.Hashtable.Entry[] .......173 .........2 javax.swing.ActionMap .......173 ........-5 javax.swing.KeyStroke[] .......171 .........3 java.awt.Insets .......169 .........6 javax.swing.AbstractButton.Handler .......169 .........5 javax.swing.JMenuItem.MenuItemFocusListener .......169 .........2 swingjs.plaf.ButtonListener .......154 .........4 javax.swing.KeyboardManager.ComponentKeyStrokePair .......145 ........14 java.awt.event.MouseEvent .......138 .........1 jalview.datamodel.PDBEntry .......136 .........5 java.util.Vector.Itr .......132 .........2 javajs.util.SB .......126 .........3 java.awt.EventQueueItem .......122 .........6 java.io.ByteArrayInputStream .......122 .........6 java.io.BufferedInputStream .......116 .........1 javax.swing.DefaultButtonModel .......112 .........6 java.lang.StringBuffer .......100 .........6 jalview.datamodel.features.FeatureStore$SearchCriterion$2 ........99 .........2 javax.swing.event.ChangeEvent ........94 .......690 javax.swing.JMenuItem ........88 .........3 java.util.Hashtable ........88 .........0 java.util.TreeMap.Entry ........77 .........1 javax.swing.ArrayTable ........72 .........8 jalview.datamodel.features.FeatureStore ........72 .........1 java.util.TreeMap ........69 ........-1 java.util.concurrent.ConcurrentHashMap.HashEntry[] ........67 .......176 jalview.datamodel.Sequence ........67 ........15 jalview.datamodel.features.SequenceFeatures ........67 .........7 java.net.URL ........65 .........1 javajs.util.AjaxURLConnection ........64 .........1 java.util.concurrent.ConcurrentHashMap.Segment ........63 ........-2 jalview.datamodel.SequenceGroup[] ........60 .........4 java.util.Collections$UnmodifiableCollection$1 ........60 .........0 javax.swing.SizeRequirements ........55 .......163 swingjs.json.JSON.JSONReader ........53 .........5 java.util.ArrayList.ListItr ........53 .........4 javax.swing.JToggleButton.ToggleButtonModel ........53 ........-2 swingjs.api.js.DOMNode[] ........51 ........-2 jalview.datamodel.SequenceI[] ........44 .........2 jalview.util.LinkedIdentityHashSet.IdentityWrapper ........39 .........5 jalview.datamodel.HiddenColumnsCursor ........38 .........1 java.lang.StackTraceElement ........35 .......169 javax.swing.JCheckBoxMenuItem ........34 ........11 jalview.util.MapList ........33 .........5 java.util.StringTokenizer ........33 .........5 jalview.datamodel.Sequence.DBModList ........33 .........2 jalview.renderer.ScaleRenderer.ScaleMark ........33 .........2 jalview.ext.ensembl.EnsemblXref ........32 .........1 java.util.Collections.SynchronizedRandomAccessList ........31 .........3 java.awt.event.ComponentEvent ........31 .........2 com.stevesoft.pat.oneChar ........31 .........1 java.lang.reflect.Constructor ........31 .........0 java.awt.Point ........30 .........0 javax.swing.KeyStroke ........30 .........0 javax.swing.ComponentInputMap ........28 .........1 com.stevesoft.pat.patInt ........27 .........1 java.util.Vector ........24 .........1 javax.swing.DefaultSingleSelectionModel ........23 .........5 java.util.SubList$1 ........23 .........3 java.util.AbstractList.ListItr ........23 .........3 jalview.datamodel.Mapping ........23 .........2 java.util.TreeMap.EntrySet ........23 .........1 java.util.TreeMap.Values ........22 ........21 javax.swing.JPopupMenu ........22 ........14 javax.swing.JPopupMenu.Separator ........22 .........2 javax.swing.JMenu.WinListener ........22 .........2 javax.swing.JMenu.MenuChangeListener ........22 .........2 java.util.TimSort ........22 .........1 java.util.RandomAccessSubList ........22 .........0 swingjs.plaf.JSPopupMenuUI.JSMenuKeyListener ........21 ........41 javax.swing.JMenu ........21 .........2 jalview.ext.ensembl.EnsemblProtein ........21 .........0 jalview.ext.ensembl.EnsemblCdna ........20 .........0 java.awt.FlowLayout ........18 .......143 javax.swing.JRadioButtonMenuItem ........18 .........3 java.util.Formatter.Flags ........18 .........1 java.awt.event.InvocationEvent ........18 .........0 java.awt.event.ItemEvent ........18 .........0 java.awt.BorderLayout ........16 .........0 jalview.datamodel.features.FeatureAttributes.AttributeData ........15 ........11 javax.swing.JPanel ........15 .........1 javax.swing.JComponent$2 ........14 .......406 jalview.datamodel.Alignment ........14 .........7 jalview.datamodel.HiddenColumns ........14 .........1 jalview.gui.ColourMenuHelper$3 ........14 .........0 java.util.LinkedList.ListItr ........14 .........0 jalview.schemes.JalviewColourScheme ........14 .........0 jalview.datamodel.HiddenSequences ........13 .........2 jalview.util.ReverseListIterator ........13 .........1 java.util.LinkedHashMap ........12 .........1 java.awt.AlphaComposite ........11 .........0 jalview.jbgui.GAlignFrame$1 ........10 .........0 java.util.BitSet ........10 .........0 java.awt.geom.Rectangle2D.Float ........10 .........0 java.awt.Color[] .........9 .........1 java.util.LinkedHashMap.LinkedEntrySet .........9 .........1 java.util.LinkedHashMap.LinkedEntryIterator .........8 .........5 java.util.Formatter.FormatSpecifier .........8 .........0 java.util.Formatter.FixedString .........8 .........0 java.awt.Font .........8 .........0 com.stevesoft.pat.Pthings .........7 .........2 com.stevesoft.pat.Bracket .........7 .........1 java.util.concurrent.ConcurrentHashMap.HashEntry .........7 .........0 javax.swing.text.Segment .........6 .........1 java.util.AbstractList.Itr .........6 .........1 com.stevesoft.pat.SubMark .........6 .........1 com.stevesoft.pat.OrMark .........6 .........1 com.stevesoft.pat.FastMulti .........6 .........0 swingjs.JSFontMetrics .........6 .........0 javax.swing.SizeRequirements[] .........6 .........0 javax.swing.DefaultBoundedRangeModel .........6 .........0 java.util.Formatter.FormatString[] .........6 .........0 jalview.datamodel.Range .........6 .........0 com.stevesoft.pat.Range .........5 .........1 swingjs.JSGraphics2D .........5 .........0 sun.java2d.StateTrackableDelegate .........5 .........0 javax.swing.event.InternalFrameEvent .........5 .........0 java.awt.RenderingHints .........5 .........0 jalview.renderer.ResidueShader .........5 .........0 Boolean .........4 .........3 javax.swing.JLabel .........4 .........3 jalview.analysis.AnnotationSorter .........4 .........2 java.util.concurrent.ConcurrentHashMap .........4 .........1 jalview.analysis.AnnotationSorter$2 .........4 .........0 sun.java2d.StateTrackable.State .........4 .........0 javax.swing.JScrollBar.ModelListener .........4 .........0 java.util.concurrent.ConcurrentHashMap.Segment[] .........4 .........0 java.awt.geom.RectIterator .........4 .........0 java.awt.event.AdjustmentEvent .........4 .........0 jalview.ext.ensembl.EnsemblSeqProxy.EnsemblSeqType .........4 .........0 jalview.analysis.AnnotationSorter$3 .........4 .........0 jalview.analysis.AnnotationSorter$1 .........4 .........0 com.stevesoft.pat.End .........4 ........-1 jalview.datamodel.Annotation[] .........3 ........46 java.awt.image.BufferedImage .........3 .........4 java.awt.image.DataBufferInt .........3 .........3 java.awt.image.DirectColorModel .........3 .........1 java.awt.GridLayout .........3 .........1 jalview.datamodel.StartRegionIterator .........3 .........0 swingjs.JSToolkit$1 .........3 .........0 sun.font.FontDesignMetrics.KeyReference .........3 .........0 sun.font.FontDesignMetrics .........3 .........0 javax.swing.ButtonGroup .........3 .........0 java.util.regex.Matcher .........3 .........0 java.util.Collections.SynchronizedSet .........3 .........0 java.awt.image.SinglePixelPackedSampleModel .........3 .........0 jalview.schemes.NucleotideColourScheme .........3 .........0 jalview.renderer.ScaleRenderer .........3 .........0 jalview.gui.AnnotationPanel.DragMode .........3 .........0 jalview.datamodel.features.FeatureAttributes.Datatype .........3 .........0 jalview.datamodel.VisibleContigsIterator .........3 .........0 jalview.analysis.AnnotationSorter.SequenceAnnotationOrder .........2 .......190 javax.swing.JScrollBar .........2 ........16 javax.swing.JScrollPane.ScrollBar .........2 ........13 com.stevesoft.pat.Regex .........2 ........10 javax.swing.JProgressBar .........2 .........2 java.awt.Container .........2 .........1 java.util.Hashtable.KeySet .........2 .........1 java.lang.IndexOutOfBoundsException .........2 .........1 java.awt.geom.Path2D.Float.CopyIterator .........2 .........1 java.awt.geom.Path2D.Float .........2 .........0 javax.swing.text.AbstractDocument.DefaultDocumentEvent .........2 .........0 javax.swing.event.UndoableEditEvent .........2 .........0 javax.swing.border.LineBorder .........2 .........0 javax.swing.JProgressBar.ModelListener .........2 .........0 java.util.LinkedHashMap.LinkedValues .........2 .........0 java.util.LinkedHashMap.LinkedValueIterator .........2 .........0 java.util.IdentityHashMap.KeyIterator .........2 .........0 java.util.Collections.SynchronizedCollection .........2 .........0 java.util.Collections.SingletonList .........2 .........0 java.util.Collections$1 .........2 .........0 java.util.ArrayDeque .........2 .........0 java.lang.Thread .........2 .........0 java.lang.StackTraceElement[] .........2 .........0 java.awt.event.ActionEvent .........2 .........0 jalview.util.IntRangeComparator .........2 .........0 jalview.io.SequenceAnnotationReport .........2 .........0 jalview.gui.AlignmentPanel[] .........2 .........0 jalview.ext.ensembl.EnsemblSequenceFetcher.EnsemblFeatureType[] .........2 .........0 jalview.ext.ensembl.EnsemblLookup .........2 .........0 jalview.datamodel.features.RangeComparator .........2 .........0 jalview.datamodel.SearchResults .........2 .........0 jalview.datamodel.AlignmentAnnotation[] .........2 .........0 jalview.datamodel.AlignmentAnnotation .........2 .........0 jalview.controller.AlignViewController .........2 .........0 com.stevesoft.pat.patInf .........2 .........0 com.stevesoft.pat.Rthings .........2 .........0 com.stevesoft.pat.Or .........2 .........0 com.stevesoft.pat.NullPattern .........1 .....11161 jalview.gui.AlignFrame .........1 .......561 jalview.gui.AlignViewport .........1 .......441 jalview.gui.AlignmentPanel .........1 ........65 jalview.schemes.ColourSchemes .........1 ........57 jalview.gui.SeqPanel .........1 ........33 jalview.gui.SeqCanvas .........1 ........19 javax.swing.JScrollPane .........1 ........11 javax.swing.JTabbedPane .........1 ........11 jalview.io.FileFormats .........1 .........9 jalview.gui.FeatureRenderer .........1 .........8 javax.swing.JRootPane .........1 .........8 javax.swing.JInternalFrame.JDesktopIcon .........1 .........8 jalview.gui.IdPanel .........1 .........7 jalview.gui.AnnotationPanel .........1 .........6 jalview.datamodel.ColumnSelection.IntList .........1 .........6 jalview.datamodel.ColumnSelection .........1 .........5 javax.swing.JToolTip .........1 .........5 jalview.jbgui.GAlignFrame$79 .........1 .........4 jalview.io.gff.SequenceOntologyLite .........1 .........3 sun.awt.image.SunWritableRaster$1 .........1 .........3 jalview.jbgui.GAlignFrame$72 .........1 .........3 jalview.gui.ViewSelectionMenu .........1 .........2 javax.swing.text.GapContent.RemoveUndo .........1 .........2 javax.swing.JLayeredPane .........1 .........2 jalview.util.LinkedIdentityHashSet$1 .........1 .........2 jalview.jbgui.GAlignFrame$83 .........1 .........2 jalview.gui.SequenceRenderer .........1 .........2 jalview.gui.IdCanvas .........1 .........2 jalview.ext.ensembl.EnsemblLookup$1 .........1 .........1 swingjs.JSKeyEvent .........1 .........1 javax.swing.JViewport .........1 .........1 javax.swing.JMenuBar .........1 .........1 java.util.concurrent.locks.ReentrantReadWriteLock.ReadLock .........1 .........1 java.util.concurrent.locks.ReentrantReadWriteLock .........1 .........1 jalview.viewmodel.seqfeatures.FeaturesDisplayed .........1 .........1 jalview.jbgui.GAlignFrame$99 .........1 .........1 jalview.jbgui.GAlignFrame$8 .........1 .........1 jalview.jbgui.GAlignFrame$59 .........1 .........1 jalview.jbgui.GAlignFrame$57 .........1 .........1 jalview.jbgui.GAlignFrame$54 .........1 .........1 jalview.jbgui.GAlignFrame$50 .........1 .........1 jalview.jbgui.GAlignFrame$49 .........1 .........1 jalview.jbgui.GAlignFrame$46 .........1 .........1 jalview.jbgui.GAlignFrame$41 .........1 .........1 jalview.jbgui.GAlignFrame$40 .........1 .........1 jalview.jbgui.GAlignFrame$29 .........1 .........1 jalview.jbgui.GAlignFrame$23 .........1 .........1 jalview.jbgui.GAlignFrame$21 .........1 .........1 jalview.jbgui.GAlignFrame$14 .........1 .........1 jalview.jbgui.GAlignFrame$13 .........1 .........1 jalview.jbgui.GAlignFrame$116 .........1 .........1 jalview.jbgui.GAlignFrame$102 .........1 .........1 jalview.io.SequenceAnnotationReport$1 .........1 .........1 jalview.io.FileFormat$3 .........1 .........1 jalview.io.FileFormat$13 .........1 .........1 jalview.gui.ScalePanel .........1 .........1 jalview.gui.ProgressBar .........1 .........1 jalview.gui.IdwidthAdjuster .........1 .........1 jalview.gui.ColourMenuHelper$1 .........1 .........1 jalview.gui.AnnotationLabels .........1 .........1 jalview.gui.AlignFrame$3 .........1 .........1 jalview.datamodel.features.FeatureAttributes$1 .........1 .........1 jalview.datamodel.features.FeatureAttributes .........1 .........0 swingjs.plaf.Resizer .........1 .........0 swingjs.plaf.LazyActionMap .........1 .........0 swingjs.plaf.JSTabbedPaneUI.TabbedPaneLayout .........1 .........0 swingjs.plaf.JSTabbedPaneUI.Handler .........1 .........0 swingjs.plaf.JSScrollPaneUI.Handler .........1 .........0 swingjs.plaf.JSMenuBarUI.Handler .........1 .........0 swingjs.plaf.JSInternalFrameUI.Handler .........1 .........0 swingjs.plaf.DefaultMenuLayout .........1 .........0 swingjs.JSMouse .........1 .........0 swingjs.JSFrameViewer .........1 .........0 sun.java2d.StateTrackable.State[] .........1 .........0 javax.swing.text.GapContent.UndoPosRef .........1 .........0 javax.swing.text.GapContent.InsertUndo .........1 .........0 javax.swing.plaf.basic.BasicBorders.MarginBorder .........1 .........0 javax.swing.ScrollPaneLayout.UIResource .........1 .........0 javax.swing.JViewport.ViewListener .........1 .........0 javax.swing.JTabbedPane.ModelListener .........1 .........0 javax.swing.JRootPane.RootLayout .........1 .........0 javax.swing.JRootPane$1 .........1 .........0 javax.swing.JComponent.IntVector .........1 .........0 javajs.util.AjaxURLStreamHandler .........1 .........0 javajs.api.JSFunction[] .........1 .........0 java.util.concurrent.locks.ReentrantReadWriteLock.WriteLock .........1 .........0 java.util.concurrent.ConcurrentHashMap.KeySet .........1 .........0 java.util.concurrent.ConcurrentHashMap.KeyIterator .........1 .........0 java.util.LinkedHashMap.LinkedKeySet .........1 .........0 java.util.LinkedHashMap.LinkedKeyIterator .........1 .........0 java.util.Hashtable.ValueCollection .........1 .........0 java.util.Hashtable.EntrySet .........1 .........0 java.util.Collections.UnmodifiableRandomAccessList .........1 .........0 java.util.Collections.SynchronizedMap .........1 .........0 java.util.Collections.EmptyIterator .........1 .........0 java.util.Collections.EmptyEnumeration .........1 .........0 java.lang.Thread[] .........1 .........0 java.awt.event.WindowEvent .........1 .........0 java.awt.event.FocusEvent .........1 .........0 java.awt.dnd.DropTargetContext .........1 .........0 java.awt.dnd.DropTarget .........1 .........0 java.awt.color.ColorSpace .........1 .........0 java.awt.Rectangle[] .........1 .........0 java.awt.LightweightDispatcher .........1 .........0 java.awt.EventQueueItem[] .........1 .........0 jalview.workers.ConsensusThread .........1 .........0 jalview.workers.AlignCalcManager .........1 .........0 jalview.viewmodel.styles.ViewStyle .........1 .........0 jalview.viewmodel.ViewportRanges .........1 .........0 jalview.util.LinkedIdentityHashSet .........1 .........0 jalview.schemes.JalviewColourScheme[] .........1 .........0 jalview.renderer.ResidueColourFinder .........1 .........0 jalview.renderer.AnnotationRenderer .........1 .........0 jalview.jbgui.GAlignFrame$98 .........1 .........0 jalview.jbgui.GAlignFrame$97 .........1 .........0 jalview.jbgui.GAlignFrame$96 .........1 .........0 jalview.jbgui.GAlignFrame$95 .........1 .........0 jalview.jbgui.GAlignFrame$94 .........1 .........0 jalview.jbgui.GAlignFrame$93 .........1 .........0 jalview.jbgui.GAlignFrame$92 .........1 .........0 jalview.jbgui.GAlignFrame$91 .........1 .........0 jalview.jbgui.GAlignFrame$90 .........1 .........0 jalview.jbgui.GAlignFrame$9 .........1 .........0 jalview.jbgui.GAlignFrame$89 .........1 .........0 jalview.jbgui.GAlignFrame$88 .........1 .........0 jalview.jbgui.GAlignFrame$87 .........1 .........0 jalview.jbgui.GAlignFrame$86 .........1 .........0 jalview.jbgui.GAlignFrame$85 .........1 .........0 jalview.jbgui.GAlignFrame$84 .........1 .........0 jalview.jbgui.GAlignFrame$82 .........1 .........0 jalview.jbgui.GAlignFrame$81 .........1 .........0 jalview.jbgui.GAlignFrame$80 .........1 .........0 jalview.jbgui.GAlignFrame$78 .........1 .........0 jalview.jbgui.GAlignFrame$77 .........1 .........0 jalview.jbgui.GAlignFrame$76 .........1 .........0 jalview.jbgui.GAlignFrame$75 .........1 .........0 jalview.jbgui.GAlignFrame$74 .........1 .........0 jalview.jbgui.GAlignFrame$73 .........1 .........0 jalview.jbgui.GAlignFrame$71 .........1 .........0 jalview.jbgui.GAlignFrame$70 .........1 .........0 jalview.jbgui.GAlignFrame$7 .........1 .........0 jalview.jbgui.GAlignFrame$69 .........1 .........0 jalview.jbgui.GAlignFrame$68 .........1 .........0 jalview.jbgui.GAlignFrame$67 .........1 .........0 jalview.jbgui.GAlignFrame$66 .........1 .........0 jalview.jbgui.GAlignFrame$65 .........1 .........0 jalview.jbgui.GAlignFrame$64 .........1 .........0 jalview.jbgui.GAlignFrame$63 .........1 .........0 jalview.jbgui.GAlignFrame$62 .........1 .........0 jalview.jbgui.GAlignFrame$61 .........1 .........0 jalview.jbgui.GAlignFrame$60 .........1 .........0 jalview.jbgui.GAlignFrame$6 .........1 .........0 jalview.jbgui.GAlignFrame$58 .........1 .........0 jalview.jbgui.GAlignFrame$56 .........1 .........0 jalview.jbgui.GAlignFrame$55 .........1 .........0 jalview.jbgui.GAlignFrame$53 .........1 .........0 jalview.jbgui.GAlignFrame$52 .........1 .........0 jalview.jbgui.GAlignFrame$51 .........1 .........0 jalview.jbgui.GAlignFrame$5 .........1 .........0 jalview.jbgui.GAlignFrame$48 .........1 .........0 jalview.jbgui.GAlignFrame$47 .........1 .........0 jalview.jbgui.GAlignFrame$45 .........1 .........0 jalview.jbgui.GAlignFrame$44 .........1 .........0 jalview.jbgui.GAlignFrame$43 .........1 .........0 jalview.jbgui.GAlignFrame$42 .........1 .........0 jalview.jbgui.GAlignFrame$4 .........1 .........0 jalview.jbgui.GAlignFrame$39 .........1 .........0 jalview.jbgui.GAlignFrame$38 .........1 .........0 jalview.jbgui.GAlignFrame$37 .........1 .........0 jalview.jbgui.GAlignFrame$36 .........1 .........0 jalview.jbgui.GAlignFrame$35 .........1 .........0 jalview.jbgui.GAlignFrame$34 .........1 .........0 jalview.jbgui.GAlignFrame$33 .........1 .........0 jalview.jbgui.GAlignFrame$32 .........1 .........0 jalview.jbgui.GAlignFrame$31 .........1 .........0 jalview.jbgui.GAlignFrame$30 .........1 .........0 jalview.jbgui.GAlignFrame$3 .........1 .........0 jalview.jbgui.GAlignFrame$28 .........1 .........0 jalview.jbgui.GAlignFrame$27 .........1 .........0 jalview.jbgui.GAlignFrame$26 .........1 .........0 jalview.jbgui.GAlignFrame$25 .........1 .........0 jalview.jbgui.GAlignFrame$24 .........1 .........0 jalview.jbgui.GAlignFrame$22 .........1 .........0 jalview.jbgui.GAlignFrame$20 .........1 .........0 jalview.jbgui.GAlignFrame$2 .........1 .........0 jalview.jbgui.GAlignFrame$19 .........1 .........0 jalview.jbgui.GAlignFrame$18 .........1 .........0 jalview.jbgui.GAlignFrame$17 .........1 .........0 jalview.jbgui.GAlignFrame$16 .........1 .........0 jalview.jbgui.GAlignFrame$15 .........1 .........0 jalview.jbgui.GAlignFrame$121 .........1 .........0 jalview.jbgui.GAlignFrame$120 .........1 .........0 jalview.jbgui.GAlignFrame$12 .........1 .........0 jalview.jbgui.GAlignFrame$119 .........1 .........0 jalview.jbgui.GAlignFrame$118 .........1 .........0 jalview.jbgui.GAlignFrame$117 .........1 .........0 jalview.jbgui.GAlignFrame$115 .........1 .........0 jalview.jbgui.GAlignFrame$114 .........1 .........0 jalview.jbgui.GAlignFrame$113 .........1 .........0 jalview.jbgui.GAlignFrame$112 .........1 .........0 jalview.jbgui.GAlignFrame$111 .........1 .........0 jalview.jbgui.GAlignFrame$110 .........1 .........0 jalview.jbgui.GAlignFrame$11 .........1 .........0 jalview.jbgui.GAlignFrame$109 .........1 .........0 jalview.jbgui.GAlignFrame$108 .........1 .........0 jalview.jbgui.GAlignFrame$107 .........1 .........0 jalview.jbgui.GAlignFrame$106 .........1 .........0 jalview.jbgui.GAlignFrame$105 .........1 .........0 jalview.jbgui.GAlignFrame$104 .........1 .........0 jalview.jbgui.GAlignFrame$103 .........1 .........0 jalview.jbgui.GAlignFrame$101 .........1 .........0 jalview.jbgui.GAlignFrame$100 .........1 .........0 jalview.jbgui.GAlignFrame$10 .........1 .........0 jalview.io.FileFormat[] .........1 .........0 jalview.io.FileFormat$9 .........1 .........0 jalview.io.FileFormat$8 .........1 .........0 jalview.io.FileFormat$7 .........1 .........0 jalview.io.FileFormat$6 .........1 .........0 jalview.io.FileFormat$5 .........1 .........0 jalview.io.FileFormat$4 .........1 .........0 jalview.io.FileFormat$2 .........1 .........0 jalview.io.FileFormat$19 .........1 .........0 jalview.io.FileFormat$18 .........1 .........0 jalview.io.FileFormat$17 .........1 .........0 jalview.io.FileFormat$16 .........1 .........0 jalview.io.FileFormat$15 .........1 .........0 jalview.io.FileFormat$14 .........1 .........0 jalview.io.FileFormat$12 .........1 .........0 jalview.io.FileFormat$11 .........1 .........0 jalview.io.FileFormat$10 .........1 .........0 jalview.io.FileFormat$1 .........1 .........0 jalview.gui.ViewSelectionMenu$1 .........1 .........0 jalview.gui.Desktop$13 .........1 .........0 jalview.gui.Desktop$12 .........1 .........0 jalview.gui.Desktop$11 .........1 .........0 jalview.gui.ColourMenuHelper$4 .........1 .........0 jalview.gui.AnnotationPanel.DragMode[] .........1 .........0 jalview.gui.AlignmentPanel$2 .........1 .........0 jalview.gui.AlignmentPanel$1 .........1 .........0 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