/* * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1) * Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.binding; //---------------------------------/ //- Imported classes and packages -/ //---------------------------------/ import org.exolab.castor.xml.Marshaller; import org.exolab.castor.xml.Unmarshaller; /** * Class Feature. * * @version $Revision$ $Date$ */ public class Feature implements java.io.Serializable { // --------------------------/ // - Class/Member Variables -/ // --------------------------/ /** * Field _begin. */ private int _begin; /** * keeps track of state for field: _begin */ private boolean _has_begin; /** * Field _end. */ private int _end; /** * keeps track of state for field: _end */ private boolean _has_end; /** * Field _type. */ private java.lang.String _type; /** * Field _description. */ private java.lang.String _description; /** * Field _status. */ private java.lang.String _status; // ----------------/ // - Constructors -/ // ----------------/ public Feature() { super(); } // -----------/ // - Methods -/ // -----------/ /** */ public void deleteBegin() { this._has_begin = false; } /** */ public void deleteEnd() { this._has_end = false; } /** * Returns the value of field 'begin'. * * @return the value of field 'Begin'. */ public int getBegin() { return this._begin; } /** * Returns the value of field 'description'. * * @return the value of field 'Description'. */ public java.lang.String getDescription() { return this._description; } /** * Returns the value of field 'end'. * * @return the value of field 'End'. */ public int getEnd() { return this._end; } /** * Returns the value of field 'status'. * * @return the value of field 'Status'. */ public java.lang.String getStatus() { return this._status; } /** * Returns the value of field 'type'. * * @return the value of field 'Type'. */ public java.lang.String getType() { return this._type; } /** * Method hasBegin. * * @return true if at least one Begin has been added */ public boolean hasBegin() { return this._has_begin; } /** * Method hasEnd. * * @return true if at least one End has been added */ public boolean hasEnd() { return this._has_end; } /** * Method isValid. * * @return true if this object is valid according to the schema */ public boolean isValid() { try { validate(); } catch (org.exolab.castor.xml.ValidationException vex) { return false; } return true; } /** * * * @param out * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema */ public void marshal(final java.io.Writer out) throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { Marshaller.marshal(this, out); } /** * * * @param handler * @throws java.io.IOException * if an IOException occurs during marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling */ public void marshal(final org.xml.sax.ContentHandler handler) throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { Marshaller.marshal(this, handler); } /** * Sets the value of field 'begin'. * * @param begin * the value of field 'begin'. */ public void setBegin(final int begin) { this._begin = begin; this._has_begin = true; } /** * Sets the value of field 'description'. * * @param description * the value of field 'description'. */ public void setDescription(final java.lang.String description) { this._description = description; } /** * Sets the value of field 'end'. * * @param end * the value of field 'end'. */ public void setEnd(final int end) { this._end = end; this._has_end = true; } /** * Sets the value of field 'status'. * * @param status * the value of field 'status'. */ public void setStatus(final java.lang.String status) { this._status = status; } /** * Sets the value of field 'type'. * * @param type * the value of field 'type'. */ public void setType(final java.lang.String type) { this._type = type; } /** * Method unmarshal. * * @param reader * @throws org.exolab.castor.xml.MarshalException * if object is null or if any SAXException is thrown during * marshaling * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema * @return the unmarshaled jalview.binding.Feature */ public static jalview.binding.Feature unmarshal( final java.io.Reader reader) throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { return (jalview.binding.Feature) Unmarshaller.unmarshal( jalview.binding.Feature.class, reader); } /** * * * @throws org.exolab.castor.xml.ValidationException * if this object is an invalid instance according to the schema */ public void validate() throws org.exolab.castor.xml.ValidationException { org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); validator.validate(this); } }