/* * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1) * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle * * This program is free software; you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program; if not, write to the Free Software * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA */ package jalview.datamodel; /** * A set of feature property constants used by jalview * * @author JimP * */ public class FeatureProperties { public static final String EXONPOS = "exon number"; public static final String EXONPRODUCT = "product"; /** * lookup feature type for a particular database to see if its a coding region * feature * * @param dbrefsource * @param string * @return */ public static boolean isCodingFeature(String dbrefsource, String type) { return ((dbrefsource == null || dbrefsource.equalsIgnoreCase(DBRefSource.EMBL) || dbrefsource .equalsIgnoreCase(DBRefSource.EMBLCDS)) && type .equalsIgnoreCase("CDS")); } }