/* * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1) * Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.datamodel; /** * A set of feature property constants used by jalview * * @author JimP * */ public class FeatureProperties { public static final String EXONPOS = "exon number"; public static final String EXONPRODUCT = "product"; /** * lookup feature type for a particular database to see if its a coding region * feature * * @param dbrefsource * @param string * @return */ public static boolean isCodingFeature(String dbrefsource, String type) { return ((dbrefsource == null || dbrefsource.equalsIgnoreCase(DBRefSource.EMBL) || dbrefsource .equalsIgnoreCase(DBRefSource.EMBLCDS)) && type .equalsIgnoreCase("CDS")); } }