/* * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.ext.rbvi.chimera; import java.util.List; import ext.edu.ucsf.rbvi.strucviz2.ChimeraManager; import ext.edu.ucsf.rbvi.strucviz2.StructureManager; /** * A class to help Jalview start, stop and send commands to ChimeraX. *

* Much of the functionality is common with Chimera, so for convenience we * extend ChimeraManager, however note this class is not based on the * Cytoscape class at * {@code https://github.com/RBVI/structureVizX/blob/master/src/main/java/edu/ucsf/rbvi/structureVizX/internal/model/ChimeraManager.java}. * * @author gmcarstairs * */ public class ChimeraXManager extends ChimeraManager { public ChimeraXManager(StructureManager structureManager) { super(structureManager); } public boolean isChimeraX() { return true; } /** * Returns "POST" as the HTTP request method to use for REST service calls to * ChimeraX * * @return */ protected String getHttpRequestMethod() { return "GET"; } /** * Adds command-line arguments to start the REST server */ protected void addLaunchArguments(List args) { args.add("--cmd"); args.add("remote rest start"); } }