/* * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.fts.core; import jalview.fts.api.FTSDataColumnI; import jalview.fts.api.GFTSPanelI; import jalview.fts.core.FTSDataColumnPreferences.PreferenceSource; import jalview.gui.Desktop; import jalview.gui.IProgressIndicator; import jalview.gui.JvSwingUtils; import jalview.gui.SequenceFetcher; import jalview.util.MessageManager; import java.awt.BorderLayout; import java.awt.CardLayout; import java.awt.Dimension; import java.awt.event.ActionEvent; import java.awt.event.ActionListener; import java.awt.event.FocusEvent; import java.awt.event.FocusListener; import java.awt.event.KeyAdapter; import java.awt.event.KeyEvent; import java.awt.event.MouseAdapter; import java.awt.event.MouseEvent; import java.util.ArrayList; import java.util.Arrays; import java.util.Collection; import java.util.Collections; import java.util.Comparator; import java.util.List; import javax.swing.ImageIcon; import javax.swing.JButton; import javax.swing.JComboBox; import javax.swing.JFrame; import javax.swing.JInternalFrame; import javax.swing.JLabel; import javax.swing.JPanel; import javax.swing.JScrollPane; import javax.swing.JTabbedPane; import javax.swing.JTable; import javax.swing.JTextField; import javax.swing.Timer; import javax.swing.event.ChangeEvent; import javax.swing.event.ChangeListener; import javax.swing.event.DocumentEvent; import javax.swing.event.DocumentListener; import javax.swing.table.DefaultTableModel; import javax.swing.table.TableColumn; /** * This class provides the swing GUI layout for FTS Panel and implements most of * the contracts defined in GFSPanelI * * @author tcnofoegbu * */ @SuppressWarnings("serial") public abstract class GFTSPanel extends JPanel implements GFTSPanelI { protected JInternalFrame mainFrame = new JInternalFrame( getFTSFrameTitle()); protected IProgressIndicator progressIdicator; protected JComboBox cmb_searchTarget = new JComboBox(); protected JButton btn_ok = new JButton(); protected JButton btn_back = new JButton(); protected JButton btn_cancel = new JButton(); protected JTextField txt_search = new JTextField(35); protected SequenceFetcher seqFetcher; protected Collection wantedFields; private String lastSearchTerm = ""; private JTable tbl_summary = new JTable() { private boolean inLayout; @Override public boolean getScrollableTracksViewportWidth() { return hasExcessWidth(); } @Override public void doLayout() { if (hasExcessWidth()) { autoResizeMode = AUTO_RESIZE_SUBSEQUENT_COLUMNS; } inLayout = true; super.doLayout(); inLayout = false; autoResizeMode = AUTO_RESIZE_OFF; } protected boolean hasExcessWidth() { return getPreferredSize().width < getParent().getWidth(); } @Override public void columnMarginChanged(ChangeEvent e) { if (isEditing()) { removeEditor(); } TableColumn resizingColumn = getTableHeader().getResizingColumn(); // Need to do this here, before the parent's // layout manager calls getPreferredSize(). if (resizingColumn != null && autoResizeMode == AUTO_RESIZE_OFF && !inLayout) { resizingColumn.setPreferredWidth(resizingColumn.getWidth()); } resizeAndRepaint(); } @Override public String getToolTipText(MouseEvent evt) { String toolTipText = null; java.awt.Point pnt = evt.getPoint(); int rowIndex = rowAtPoint(pnt); int colIndex = columnAtPoint(pnt); try { if (getValueAt(rowIndex, colIndex) == null) { return null; } toolTipText = getValueAt(rowIndex, colIndex).toString(); } catch (Exception e) { e.printStackTrace(); } toolTipText = (toolTipText == null ? null : (toolTipText.length() > 500 ? JvSwingUtils.wrapTooltip( true, toolTipText.subSequence(0, 500) + "...") : JvSwingUtils.wrapTooltip(true, toolTipText))); return toolTipText; } }; protected StringBuilder errorWarning = new StringBuilder(); protected JScrollPane scrl_searchResult = new JScrollPane(tbl_summary); protected ImageIcon warningImage = new ImageIcon(getClass().getResource( "/images/warning.gif")); protected ImageIcon loadingImage = new ImageIcon(getClass().getResource( "/images/loading.gif")); protected JLabel lbl_warning = new JLabel(warningImage); protected JLabel lbl_loading = new JLabel(loadingImage); private JTabbedPane tabbedPane = new JTabbedPane(); private JPanel pnl_actions = new JPanel(); private JPanel pnl_results = new JPanel(new CardLayout()); private JPanel pnl_inputs = new JPanel(); private BorderLayout mainLayout = new BorderLayout(); protected Object[] previousWantedFields; public GFTSPanel() { try { jbInit(); mainFrame.invalidate(); mainFrame.pack(); } catch (Exception e) { e.printStackTrace(); } } /** * Initializes the GUI default properties * * @throws Exception */ private void jbInit() throws Exception { lbl_warning.setVisible(false); lbl_warning.setFont(new java.awt.Font("Verdana", 0, 12)); lbl_loading.setVisible(false); lbl_loading.setFont(new java.awt.Font("Verdana", 0, 12)); tbl_summary.setAutoCreateRowSorter(true); tbl_summary.getTableHeader().setReorderingAllowed(false); tbl_summary.addMouseListener(new MouseAdapter() { @Override public void mouseClicked(MouseEvent e) { validateSelection(); } @Override public void mouseReleased(MouseEvent e) { validateSelection(); } }); tbl_summary.addKeyListener(new KeyAdapter() { @Override public void keyPressed(KeyEvent evt) { validateSelection(); switch (evt.getKeyCode()) { case KeyEvent.VK_ESCAPE: // escape key btn_back_ActionPerformed(); break; case KeyEvent.VK_ENTER: // enter key if (btn_ok.isEnabled()) { okAction(); } evt.consume(); break; case KeyEvent.VK_TAB: // tab key if (evt.isShiftDown()) { tabbedPane.requestFocus(); } else { btn_back.requestFocus(); } evt.consume(); break; default: return; } } }); btn_back.setFont(new java.awt.Font("Verdana", 0, 12)); btn_back.setText(MessageManager.getString("action.back")); btn_back.addActionListener(new java.awt.event.ActionListener() { @Override public void actionPerformed(ActionEvent e) { btn_back_ActionPerformed(); } }); btn_back.addKeyListener(new KeyAdapter() { @Override public void keyPressed(KeyEvent evt) { if (evt.getKeyCode() == KeyEvent.VK_ENTER) { btn_back_ActionPerformed(); } } }); btn_ok.setEnabled(false); btn_ok.setFont(new java.awt.Font("Verdana", 0, 12)); btn_ok.setText(MessageManager.getString("action.ok")); btn_ok.addActionListener(new java.awt.event.ActionListener() { @Override public void actionPerformed(ActionEvent e) { okAction(); } }); btn_ok.addKeyListener(new KeyAdapter() { @Override public void keyPressed(KeyEvent evt) { if (evt.getKeyCode() == KeyEvent.VK_ENTER) { okAction(); } } }); btn_cancel.setFont(new java.awt.Font("Verdana", 0, 12)); btn_cancel.setText(MessageManager.getString("action.cancel")); btn_cancel.addActionListener(new java.awt.event.ActionListener() { @Override public void actionPerformed(ActionEvent e) { btn_cancel_ActionPerformed(); } }); btn_cancel.addKeyListener(new KeyAdapter() { @Override public void keyPressed(KeyEvent evt) { if (evt.getKeyCode() == KeyEvent.VK_ENTER) { btn_cancel_ActionPerformed(); } } }); scrl_searchResult.setPreferredSize(new Dimension(800, 400)); cmb_searchTarget.setFont(new java.awt.Font("Verdana", 0, 12)); cmb_searchTarget.addActionListener(new ActionListener() { @Override public void actionPerformed(ActionEvent e) { String tooltipText; if ("all".equalsIgnoreCase(getCmbSearchTarget().getSelectedItem() .toString())) { tooltipText = MessageManager.getString("label.search_all"); } else if ("pdb id".equalsIgnoreCase(getCmbSearchTarget() .getSelectedItem().toString())) { tooltipText = MessageManager .getString("label.separate_multiple_accession_ids"); } else { tooltipText = MessageManager.formatMessage( "label.separate_multiple_query_values", new Object[] { getCmbSearchTarget().getSelectedItem() .toString() }); } txt_search.setToolTipText(JvSwingUtils.wrapTooltip(true, tooltipText)); searchAction(); } }); populateCmbSearchTargetOptions(); txt_search.setFont(new java.awt.Font("Verdana", 0, 12)); txt_search.addKeyListener(new KeyAdapter() { @Override public void keyPressed(KeyEvent e) { if (e.getKeyCode() == KeyEvent.VK_ENTER) { if (txt_search.getText() == null || txt_search.getText().isEmpty()) { return; } String primaryKeyName = getFTSRestClient().getPrimaryKeyColumn() .getName(); if (primaryKeyName.equalsIgnoreCase(getCmbSearchTarget() .getSelectedItem().toString())) { transferToSequenceFetcher(txt_search.getText()); } } } }); final DeferredTextInputListener listener = new DeferredTextInputListener( 1500, new ActionListener() { @Override public void actionPerformed(ActionEvent e) { if (!getTypedText().equalsIgnoreCase(lastSearchTerm)) { searchAction(); lastSearchTerm = getTypedText(); } } }, false); txt_search.getDocument().addDocumentListener(listener); txt_search.addFocusListener(new FocusListener() { @Override public void focusGained(FocusEvent e) { listener.start(); } @Override public void focusLost(FocusEvent e) { listener.stop(); } }); final String searchTabTitle = MessageManager .getString("label.search_result"); final String configureCols = MessageManager .getString("label.configure_displayed_columns"); ChangeListener changeListener = new ChangeListener() { @Override public void stateChanged(ChangeEvent changeEvent) { JTabbedPane sourceTabbedPane = (JTabbedPane) changeEvent .getSource(); int index = sourceTabbedPane.getSelectedIndex(); btn_back.setVisible(true); btn_cancel.setVisible(true); btn_ok.setVisible(true); if (sourceTabbedPane.getTitleAt(index).equals(configureCols)) { btn_back.setVisible(false); btn_cancel.setVisible(false); btn_ok.setVisible(false); btn_back.setEnabled(false); btn_cancel.setEnabled(false); btn_ok.setEnabled(false); previousWantedFields = getFTSRestClient() .getAllDefaulDisplayedDataColumns() .toArray(new Object[0]); } if (sourceTabbedPane.getTitleAt(index).equals(searchTabTitle)) { btn_back.setEnabled(true); btn_cancel.setEnabled(true); if (wantedFieldsUpdated()) { searchAction(); } else { validateSelection(); } } } }; tabbedPane.addChangeListener(changeListener); tabbedPane.setPreferredSize(new Dimension(800, 400)); tabbedPane.add(searchTabTitle, scrl_searchResult); tabbedPane.add(configureCols, new FTSDataColumnPreferences( PreferenceSource.SEARCH_SUMMARY, getFTSRestClient())); pnl_actions.add(btn_back); pnl_actions.add(btn_ok); pnl_actions.add(btn_cancel); pnl_results.add(tabbedPane); pnl_inputs.add(cmb_searchTarget); pnl_inputs.add(txt_search); pnl_inputs.add(lbl_loading); pnl_inputs.add(lbl_warning); this.setLayout(mainLayout); this.add(pnl_inputs, java.awt.BorderLayout.NORTH); this.add(pnl_results, java.awt.BorderLayout.CENTER); this.add(pnl_actions, java.awt.BorderLayout.SOUTH); mainFrame.setVisible(true); mainFrame.setContentPane(this); mainFrame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE); Desktop.addInternalFrame(mainFrame, getFTSFrameTitle(), 900, 500); } public class DeferredTextInputListener implements DocumentListener { private final Timer swingTimer; public DeferredTextInputListener(int timeOut, ActionListener listener, boolean repeats) { swingTimer = new Timer(timeOut, listener); swingTimer.setRepeats(repeats); } public void start() { swingTimer.start(); } public void stop() { swingTimer.stop(); } @Override public void insertUpdate(DocumentEvent e) { swingTimer.restart(); } @Override public void removeUpdate(DocumentEvent e) { swingTimer.restart(); } @Override public void changedUpdate(DocumentEvent e) { swingTimer.restart(); } } public boolean wantedFieldsUpdated() { if (previousWantedFields == null) { return true; } return Arrays.equals(getFTSRestClient() .getAllDefaulDisplayedDataColumns() .toArray(new Object[0]), previousWantedFields) ? false : true; } public void validateSelection() { if (tbl_summary.getSelectedRows().length > 0) { btn_ok.setEnabled(true); } else { btn_ok.setEnabled(false); } } public JComboBox getCmbSearchTarget() { return cmb_searchTarget; } public JTextField getTxtSearch() { return txt_search; } public JInternalFrame getMainFrame() { return mainFrame; } protected void delayAndEnableActionButtons() { new Thread() { @Override public void run() { try { Thread.sleep(1500); } catch (InterruptedException e) { e.printStackTrace(); } btn_ok.setEnabled(true); btn_back.setEnabled(true); btn_cancel.setEnabled(true); } }.start(); } protected void checkForErrors() { lbl_warning.setVisible(false); if (errorWarning.length() > 0) { lbl_loading.setVisible(false); lbl_warning.setToolTipText(JvSwingUtils.wrapTooltip(true, errorWarning.toString())); lbl_warning.setVisible(true); } } protected void btn_back_ActionPerformed() { mainFrame.dispose(); new SequenceFetcher(progressIdicator); } protected void disableActionButtons() { btn_ok.setEnabled(false); btn_back.setEnabled(false); btn_cancel.setEnabled(false); } protected void btn_cancel_ActionPerformed() { mainFrame.dispose(); } /** * Populates search target combo-box options */ public void populateCmbSearchTargetOptions() { List searchableTargets = new ArrayList(); try { Collection foundFTSTargets = getFTSRestClient() .getSearchableDataColumns(); searchableTargets.addAll(foundFTSTargets); } catch (Exception e) { e.printStackTrace(); } Collections.sort(searchableTargets, new Comparator() { @Override public int compare(FTSDataColumnI o1, FTSDataColumnI o2) { return o1.getName().compareTo(o2.getName()); } }); for (FTSDataColumnI searchTarget : searchableTargets) { cmb_searchTarget.addItem(searchTarget); } } public void transferToSequenceFetcher(String ids) { // mainFrame.dispose(); seqFetcher.getTextArea().setText(ids); Thread worker = new Thread(seqFetcher); worker.start(); } @Override public String getTypedText() { return txt_search.getText().trim(); } @Override public JTable getResultTable() { return tbl_summary; } public void reset() { lbl_loading.setVisible(false); errorWarning.setLength(0); lbl_warning.setVisible(false); btn_ok.setEnabled(false); mainFrame.setTitle(getFTSFrameTitle()); referesh(); tbl_summary.setModel(new DefaultTableModel()); tbl_summary.setVisible(false); } @Override public void setErrorMessage(String message) { errorWarning.append(message); } @Override public void updateSearchFrameTitle(String title) { mainFrame.setTitle(title); } @Override public void setSearchInProgress(Boolean isSearchInProgress) { lbl_loading.setVisible(isSearchInProgress); } public void referesh() { mainFrame.setTitle(getFTSFrameTitle()); } }