/* * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.gui; import jalview.datamodel.PDBEntry; import jalview.datamodel.SequenceI; import jalview.datamodel.StructureViewerModel; import jalview.gui.StructureViewer.ViewerType; /** * A class for the gui frame through which Jalview interacts with the ChimeraX * structure viewer. Mostly the same as ChimeraViewFrame with a few overrides * for the differences. * * @author gmcarstairs * */ public class ChimeraXViewFrame extends ChimeraViewFrame { public ChimeraXViewFrame(PDBEntry pdb, SequenceI[] seqsForPdb, String[] chains, AlignmentPanel ap) { super(pdb, seqsForPdb, chains, ap); } public ChimeraXViewFrame(PDBEntry[] pdbsForFile, boolean superposeAdded, SequenceI[][] theSeqs, AlignmentPanel ap) { super(pdbsForFile, superposeAdded, theSeqs, ap); } /** * Constructor given a session file to be loaded * * @param viewerData * @param alignPanel * @param sessionFile * @param vid */ public ChimeraXViewFrame(StructureViewerModel viewerData, AlignmentPanel alignPanel, String sessionFile, String vid) { super(viewerData, alignPanel, sessionFile, vid); } @Override public ViewerType getViewerType() { return ViewerType.CHIMERAX; } @Override protected String getViewerName() { return "ChimeraX"; } @Override protected JalviewChimeraBindingModel newBindingModel(AlignmentPanel ap, PDBEntry[] pdbentrys, SequenceI[][] seqs) { return new JalviewChimeraXBindingModel(this, ap.getStructureSelectionManager(), pdbentrys, seqs, null); } }