/*******************************************************************************
* Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
* Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with Jalview. If not, see .
*******************************************************************************/
/*
* This class was automatically generated with
* Castor 1.1, using an XML
* Schema.
* $Id$
*/
package jalview.schemabinding.version2;
//---------------------------------/
//- Imported classes and packages -/
//---------------------------------/
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
/**
* Class AnnotationColours.
*
* @version $Revision$ $Date$
*/
public class AnnotationColours implements java.io.Serializable {
//--------------------------/
//- Class/Member Variables -/
//--------------------------/
/**
* Field _aboveThreshold.
*/
private int _aboveThreshold;
/**
* keeps track of state for field: _aboveThreshold
*/
private boolean _has_aboveThreshold;
/**
* Field _annotation.
*/
private java.lang.String _annotation;
/**
* Field _minColour.
*/
private int _minColour;
/**
* keeps track of state for field: _minColour
*/
private boolean _has_minColour;
/**
* Field _maxColour.
*/
private int _maxColour;
/**
* keeps track of state for field: _maxColour
*/
private boolean _has_maxColour;
/**
* Field _colourScheme.
*/
private java.lang.String _colourScheme;
/**
* Field _threshold.
*/
private float _threshold;
/**
* keeps track of state for field: _threshold
*/
private boolean _has_threshold;
//----------------/
//- Constructors -/
//----------------/
public AnnotationColours() {
super();
}
//-----------/
//- Methods -/
//-----------/
/**
*/
public void deleteAboveThreshold(
) {
this._has_aboveThreshold= false;
}
/**
*/
public void deleteMaxColour(
) {
this._has_maxColour= false;
}
/**
*/
public void deleteMinColour(
) {
this._has_minColour= false;
}
/**
*/
public void deleteThreshold(
) {
this._has_threshold= false;
}
/**
* Returns the value of field 'aboveThreshold'.
*
* @return the value of field 'AboveThreshold'.
*/
public int getAboveThreshold(
) {
return this._aboveThreshold;
}
/**
* Returns the value of field 'annotation'.
*
* @return the value of field 'Annotation'.
*/
public java.lang.String getAnnotation(
) {
return this._annotation;
}
/**
* Returns the value of field 'colourScheme'.
*
* @return the value of field 'ColourScheme'.
*/
public java.lang.String getColourScheme(
) {
return this._colourScheme;
}
/**
* Returns the value of field 'maxColour'.
*
* @return the value of field 'MaxColour'.
*/
public int getMaxColour(
) {
return this._maxColour;
}
/**
* Returns the value of field 'minColour'.
*
* @return the value of field 'MinColour'.
*/
public int getMinColour(
) {
return this._minColour;
}
/**
* Returns the value of field 'threshold'.
*
* @return the value of field 'Threshold'.
*/
public float getThreshold(
) {
return this._threshold;
}
/**
* Method hasAboveThreshold.
*
* @return true if at least one AboveThreshold has been added
*/
public boolean hasAboveThreshold(
) {
return this._has_aboveThreshold;
}
/**
* Method hasMaxColour.
*
* @return true if at least one MaxColour has been added
*/
public boolean hasMaxColour(
) {
return this._has_maxColour;
}
/**
* Method hasMinColour.
*
* @return true if at least one MinColour has been added
*/
public boolean hasMinColour(
) {
return this._has_minColour;
}
/**
* Method hasThreshold.
*
* @return true if at least one Threshold has been added
*/
public boolean hasThreshold(
) {
return this._has_threshold;
}
/**
* Method isValid.
*
* @return true if this object is valid according to the schema
*/
public boolean isValid(
) {
try {
validate();
} catch (org.exolab.castor.xml.ValidationException vex) {
return false;
}
return true;
}
/**
*
*
* @param out
* @throws org.exolab.castor.xml.MarshalException if object is
* null or if any SAXException is thrown during marshaling
* @throws org.exolab.castor.xml.ValidationException if this
* object is an invalid instance according to the schema
*/
public void marshal(
final java.io.Writer out)
throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
Marshaller.marshal(this, out);
}
/**
*
*
* @param handler
* @throws java.io.IOException if an IOException occurs during
* marshaling
* @throws org.exolab.castor.xml.ValidationException if this
* object is an invalid instance according to the schema
* @throws org.exolab.castor.xml.MarshalException if object is
* null or if any SAXException is thrown during marshaling
*/
public void marshal(
final org.xml.sax.ContentHandler handler)
throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
Marshaller.marshal(this, handler);
}
/**
* Sets the value of field 'aboveThreshold'.
*
* @param aboveThreshold the value of field 'aboveThreshold'.
*/
public void setAboveThreshold(
final int aboveThreshold) {
this._aboveThreshold = aboveThreshold;
this._has_aboveThreshold = true;
}
/**
* Sets the value of field 'annotation'.
*
* @param annotation the value of field 'annotation'.
*/
public void setAnnotation(
final java.lang.String annotation) {
this._annotation = annotation;
}
/**
* Sets the value of field 'colourScheme'.
*
* @param colourScheme the value of field 'colourScheme'.
*/
public void setColourScheme(
final java.lang.String colourScheme) {
this._colourScheme = colourScheme;
}
/**
* Sets the value of field 'maxColour'.
*
* @param maxColour the value of field 'maxColour'.
*/
public void setMaxColour(
final int maxColour) {
this._maxColour = maxColour;
this._has_maxColour = true;
}
/**
* Sets the value of field 'minColour'.
*
* @param minColour the value of field 'minColour'.
*/
public void setMinColour(
final int minColour) {
this._minColour = minColour;
this._has_minColour = true;
}
/**
* Sets the value of field 'threshold'.
*
* @param threshold the value of field 'threshold'.
*/
public void setThreshold(
final float threshold) {
this._threshold = threshold;
this._has_threshold = true;
}
/**
* Method unmarshal.
*
* @param reader
* @throws org.exolab.castor.xml.MarshalException if object is
* null or if any SAXException is thrown during marshaling
* @throws org.exolab.castor.xml.ValidationException if this
* object is an invalid instance according to the schema
* @return the unmarshaled
* jalview.schemabinding.version2.AnnotationColours
*/
public static jalview.schemabinding.version2.AnnotationColours unmarshal(
final java.io.Reader reader)
throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
return (jalview.schemabinding.version2.AnnotationColours) Unmarshaller.unmarshal(jalview.schemabinding.version2.AnnotationColours.class, reader);
}
/**
*
*
* @throws org.exolab.castor.xml.ValidationException if this
* object is an invalid instance according to the schema
*/
public void validate(
)
throws org.exolab.castor.xml.ValidationException {
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
validator.validate(this);
}
}