/*
 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
 * Copyright (C) 2014 The Jalview Authors
 * 
 * This file is part of Jalview.
 * 
 * Jalview is free software: you can redistribute it and/or
 * modify it under the terms of the GNU General Public License 
 * as published by the Free Software Foundation, either version 3
 * of the License, or (at your option) any later version.
 *  
 * Jalview is distributed in the hope that it will be useful, but 
 * WITHOUT ANY WARRANTY; without even the implied warranty 
 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
 * PURPOSE.  See the GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License
 * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
 * The Jalview Authors are detailed in the 'AUTHORS' file.
 */
package jalview.schemabinding.version2.descriptors;

  //---------------------------------/
 //- Imported classes and packages -/
//---------------------------------/

import jalview.schemabinding.version2.Annotation;

/**
 * Class AnnotationDescriptor.
 * 
 * @version $Revision$ $Date$
 */
public class AnnotationDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {


      //--------------------------/
     //- Class/Member Variables -/
    //--------------------------/

    /**
     * Field _elementDefinition.
     */
    private boolean _elementDefinition;

    /**
     * Field _nsPrefix.
     */
    private java.lang.String _nsPrefix;

    /**
     * Field _nsURI.
     */
    private java.lang.String _nsURI;

    /**
     * Field _xmlName.
     */
    private java.lang.String _xmlName;


      //----------------/
     //- Constructors -/
    //----------------/

    public AnnotationDescriptor() {
        super();
        _nsURI = "www.vamsas.ac.uk/jalview/version2";
        _xmlName = "Annotation";
        _elementDefinition = true;
        
        //-- set grouping compositor
        setCompositorAsSequence();
        org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;
        org.exolab.castor.mapping.FieldHandler             handler        = null;
        org.exolab.castor.xml.FieldValidator               fieldValidator = null;
        //-- initialize attribute descriptors
        
        //-- _graph
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_graph", "graph", org.exolab.castor.xml.NodeType.Attribute);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                if (!target.hasGraph()) { return null; }
                return (target.getGraph() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    // ignore null values for non optional primitives
                    if (value == null) { return; }
                    
                    target.setGraph( ((java.lang.Boolean) value).booleanValue());
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setRequired(true);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _graph
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        fieldValidator.setMinOccurs(1);
        { //-- local scope
            org.exolab.castor.xml.validators.BooleanValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
            fieldValidator.setValidator(typeValidator);
        }
        desc.setValidator(fieldValidator);
        //-- _graphType
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphType", "graphType", org.exolab.castor.xml.NodeType.Attribute);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                if (!target.hasGraphType()) { return null; }
                return new java.lang.Integer(target.getGraphType());
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    // if null, use delete method for optional primitives 
                    if (value == null) {
                        target.deleteGraphType();
                        return;
                    }
                    target.setGraphType( ((java.lang.Integer) value).intValue());
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _graphType
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.IntValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.IntValidator();
            fieldValidator.setValidator(typeValidator);
            typeValidator.setMinInclusive(-2147483648);
            typeValidator.setMaxInclusive(2147483647);
        }
        desc.setValidator(fieldValidator);
        //-- _sequenceRef
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_sequenceRef", "sequenceRef", org.exolab.castor.xml.NodeType.Attribute);
        desc.setImmutable(true);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                return target.getSequenceRef();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    target.setSequenceRef( (java.lang.String) value);
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _sequenceRef
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.StringValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.StringValidator();
            fieldValidator.setValidator(typeValidator);
            typeValidator.setWhiteSpace("preserve");
        }
        desc.setValidator(fieldValidator);
        //-- _groupRef
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_groupRef", "groupRef", org.exolab.castor.xml.NodeType.Attribute);
        desc.setImmutable(true);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                return target.getGroupRef();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    target.setGroupRef( (java.lang.String) value);
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _groupRef
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.StringValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.StringValidator();
            fieldValidator.setValidator(typeValidator);
            typeValidator.setWhiteSpace("preserve");
        }
        desc.setValidator(fieldValidator);
        //-- _graphColour
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphColour", "graphColour", org.exolab.castor.xml.NodeType.Attribute);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                if (!target.hasGraphColour()) { return null; }
                return new java.lang.Integer(target.getGraphColour());
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    // if null, use delete method for optional primitives 
                    if (value == null) {
                        target.deleteGraphColour();
                        return;
                    }
                    target.setGraphColour( ((java.lang.Integer) value).intValue());
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _graphColour
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.IntValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.IntValidator();
            fieldValidator.setValidator(typeValidator);
            typeValidator.setMinInclusive(-2147483648);
            typeValidator.setMaxInclusive(2147483647);
        }
        desc.setValidator(fieldValidator);
        //-- _graphGroup
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphGroup", "graphGroup", org.exolab.castor.xml.NodeType.Attribute);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                if (!target.hasGraphGroup()) { return null; }
                return new java.lang.Integer(target.getGraphGroup());
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    // if null, use delete method for optional primitives 
                    if (value == null) {
                        target.deleteGraphGroup();
                        return;
                    }
                    target.setGraphGroup( ((java.lang.Integer) value).intValue());
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _graphGroup
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.IntValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.IntValidator();
            fieldValidator.setValidator(typeValidator);
            typeValidator.setMinInclusive(-2147483648);
            typeValidator.setMaxInclusive(2147483647);
        }
        desc.setValidator(fieldValidator);
        //-- _graphHeight
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphHeight", "graphHeight", org.exolab.castor.xml.NodeType.Attribute);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                if (!target.hasGraphHeight()) { return null; }
                return new java.lang.Integer(target.getGraphHeight());
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    // if null, use delete method for optional primitives 
                    if (value == null) {
                        target.deleteGraphHeight();
                        return;
                    }
                    target.setGraphHeight( ((java.lang.Integer) value).intValue());
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _graphHeight
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.IntValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.IntValidator();
            fieldValidator.setValidator(typeValidator);
            typeValidator.setMinInclusive(-2147483648);
            typeValidator.setMaxInclusive(2147483647);
        }
        desc.setValidator(fieldValidator);
        //-- _id
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
        desc.setImmutable(true);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                return target.getId();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    target.setId( (java.lang.String) value);
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _id
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.StringValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.StringValidator();
            fieldValidator.setValidator(typeValidator);
            typeValidator.setWhiteSpace("preserve");
        }
        desc.setValidator(fieldValidator);
        //-- _scoreOnly
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_scoreOnly", "scoreOnly", org.exolab.castor.xml.NodeType.Attribute);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                if (!target.hasScoreOnly()) { return null; }
                return (target.getScoreOnly() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    // if null, use delete method for optional primitives 
                    if (value == null) {
                        target.deleteScoreOnly();
                        return;
                    }
                    target.setScoreOnly( ((java.lang.Boolean) value).booleanValue());
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _scoreOnly
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.BooleanValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
            fieldValidator.setValidator(typeValidator);
        }
        desc.setValidator(fieldValidator);
        //-- _score
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Double.TYPE, "_score", "score", org.exolab.castor.xml.NodeType.Attribute);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                if (!target.hasScore()) { return null; }
                return new java.lang.Double(target.getScore());
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    // if null, use delete method for optional primitives 
                    if (value == null) {
                        target.deleteScore();
                        return;
                    }
                    target.setScore( ((java.lang.Double) value).doubleValue());
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _score
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.DoubleValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.DoubleValidator();
            fieldValidator.setValidator(typeValidator);
            typeValidator.setMinInclusive(-1.7976931348623157E308);
            typeValidator.setMaxInclusive(1.7976931348623157E308);
        }
        desc.setValidator(fieldValidator);
        //-- _visible
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_visible", "visible", org.exolab.castor.xml.NodeType.Attribute);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                if (!target.hasVisible()) { return null; }
                return (target.getVisible() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    // if null, use delete method for optional primitives 
                    if (value == null) {
                        target.deleteVisible();
                        return;
                    }
                    target.setVisible( ((java.lang.Boolean) value).booleanValue());
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _visible
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.BooleanValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
            fieldValidator.setValidator(typeValidator);
        }
        desc.setValidator(fieldValidator);
        //-- _centreColLabels
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_centreColLabels", "centreColLabels", org.exolab.castor.xml.NodeType.Attribute);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                if (!target.hasCentreColLabels()) { return null; }
                return (target.getCentreColLabels() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    // if null, use delete method for optional primitives 
                    if (value == null) {
                        target.deleteCentreColLabels();
                        return;
                    }
                    target.setCentreColLabels( ((java.lang.Boolean) value).booleanValue());
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _centreColLabels
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.BooleanValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
            fieldValidator.setValidator(typeValidator);
        }
        desc.setValidator(fieldValidator);
        //-- _scaleColLabels
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_scaleColLabels", "scaleColLabels", org.exolab.castor.xml.NodeType.Attribute);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                if (!target.hasScaleColLabels()) { return null; }
                return (target.getScaleColLabels() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    // if null, use delete method for optional primitives 
                    if (value == null) {
                        target.deleteScaleColLabels();
                        return;
                    }
                    target.setScaleColLabels( ((java.lang.Boolean) value).booleanValue());
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _scaleColLabels
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.BooleanValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
            fieldValidator.setValidator(typeValidator);
        }
        desc.setValidator(fieldValidator);
        //-- _showAllColLabels
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showAllColLabels", "showAllColLabels", org.exolab.castor.xml.NodeType.Attribute);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                if (!target.hasShowAllColLabels()) { return null; }
                return (target.getShowAllColLabels() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    // if null, use delete method for optional primitives 
                    if (value == null) {
                        target.deleteShowAllColLabels();
                        return;
                    }
                    target.setShowAllColLabels( ((java.lang.Boolean) value).booleanValue());
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _showAllColLabels
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.BooleanValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
            fieldValidator.setValidator(typeValidator);
        }
        desc.setValidator(fieldValidator);
        //-- _autoCalculated
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_autoCalculated", "autoCalculated", org.exolab.castor.xml.NodeType.Attribute);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                if (!target.hasAutoCalculated()) { return null; }
                return (target.getAutoCalculated() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    // if null, use delete method for optional primitives 
                    if (value == null) {
                        target.deleteAutoCalculated();
                        return;
                    }
                    target.setAutoCalculated( ((java.lang.Boolean) value).booleanValue());
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _autoCalculated
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.BooleanValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
            fieldValidator.setValidator(typeValidator);
        }
        desc.setValidator(fieldValidator);
        //-- _belowAlignment
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_belowAlignment", "belowAlignment", org.exolab.castor.xml.NodeType.Attribute);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                if (!target.hasBelowAlignment()) { return null; }
                return (target.getBelowAlignment() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    // if null, use delete method for optional primitives 
                    if (value == null) {
                        target.deleteBelowAlignment();
                        return;
                    }
                    target.setBelowAlignment( ((java.lang.Boolean) value).booleanValue());
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _belowAlignment
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.BooleanValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
            fieldValidator.setValidator(typeValidator);
        }
        desc.setValidator(fieldValidator);
        //-- _calcId
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_calcId", "calcId", org.exolab.castor.xml.NodeType.Attribute);
        desc.setImmutable(true);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                return target.getCalcId();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    target.setCalcId( (java.lang.String) value);
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _calcId
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.StringValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.StringValidator();
            fieldValidator.setValidator(typeValidator);
            typeValidator.setWhiteSpace("preserve");
        }
        desc.setValidator(fieldValidator);
        //-- initialize element descriptors
        
        //-- _annotationElementList
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.AnnotationElement.class, "_annotationElementList", "annotationElement", org.exolab.castor.xml.NodeType.Element);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                return target.getAnnotationElement();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    target.addAnnotationElement( (jalview.schemabinding.version2.AnnotationElement) value);
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
                try {
                    Annotation target = (Annotation) object;
                    target.removeAllAnnotationElement();
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return new jalview.schemabinding.version2.AnnotationElement();
            }
        };
        desc.setHandler(handler);
        desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
        desc.setMultivalued(true);
        addFieldDescriptor(desc);
        
        //-- validation code for: _annotationElementList
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        fieldValidator.setMinOccurs(0);
        { //-- local scope
        }
        desc.setValidator(fieldValidator);
        //-- _label
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_label", "label", org.exolab.castor.xml.NodeType.Element);
        desc.setImmutable(true);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                return target.getLabel();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    target.setLabel( (java.lang.String) value);
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
        desc.setRequired(true);
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _label
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        fieldValidator.setMinOccurs(1);
        { //-- local scope
            org.exolab.castor.xml.validators.StringValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.StringValidator();
            fieldValidator.setValidator(typeValidator);
            typeValidator.setWhiteSpace("preserve");
        }
        desc.setValidator(fieldValidator);
        //-- _description
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_description", "description", org.exolab.castor.xml.NodeType.Element);
        desc.setImmutable(true);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                return target.getDescription();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    target.setDescription( (java.lang.String) value);
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return null;
            }
        };
        desc.setHandler(handler);
        desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _description
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
            org.exolab.castor.xml.validators.StringValidator typeValidator;
            typeValidator = new org.exolab.castor.xml.validators.StringValidator();
            fieldValidator.setValidator(typeValidator);
            typeValidator.setWhiteSpace("preserve");
        }
        desc.setValidator(fieldValidator);
        //-- _thresholdLine
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.ThresholdLine.class, "_thresholdLine", "thresholdLine", org.exolab.castor.xml.NodeType.Element);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                return target.getThresholdLine();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    target.setThresholdLine( (jalview.schemabinding.version2.ThresholdLine) value);
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return new jalview.schemabinding.version2.ThresholdLine();
            }
        };
        desc.setHandler(handler);
        desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
        desc.setMultivalued(false);
        addFieldDescriptor(desc);
        
        //-- validation code for: _thresholdLine
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        { //-- local scope
        }
        desc.setValidator(fieldValidator);
        //-- _propertyList
        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Property.class, "_propertyList", "property", org.exolab.castor.xml.NodeType.Element);
        handler = new org.exolab.castor.xml.XMLFieldHandler() {
            public java.lang.Object getValue( java.lang.Object object ) 
                throws IllegalStateException
            {
                Annotation target = (Annotation) object;
                return target.getProperty();
            }
            public void setValue( java.lang.Object object, java.lang.Object value) 
                throws IllegalStateException, IllegalArgumentException
            {
                try {
                    Annotation target = (Annotation) object;
                    target.addProperty( (jalview.schemabinding.version2.Property) value);
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
                try {
                    Annotation target = (Annotation) object;
                    target.removeAllProperty();
                } catch (java.lang.Exception ex) {
                    throw new IllegalStateException(ex.toString());
                }
            }
            public java.lang.Object newInstance(java.lang.Object parent) {
                return new jalview.schemabinding.version2.Property();
            }
        };
        desc.setHandler(handler);
        desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
        desc.setMultivalued(true);
        addFieldDescriptor(desc);
        
        //-- validation code for: _propertyList
        fieldValidator = new org.exolab.castor.xml.FieldValidator();
        fieldValidator.setMinOccurs(0);
        { //-- local scope
        }
        desc.setValidator(fieldValidator);
    }


      //-----------/
     //- Methods -/
    //-----------/

    /**
     * Method getAccessMode.
     * 
     * @return the access mode specified for this class.
     */
    public org.exolab.castor.mapping.AccessMode getAccessMode(
    ) {
        return null;
    }

    /**
     * Method getIdentity.
     * 
     * @return the identity field, null if this class has no
     * identity.
     */
    public org.exolab.castor.mapping.FieldDescriptor getIdentity(
    ) {
        return super.getIdentity();
    }

    /**
     * Method getJavaClass.
     * 
     * @return the Java class represented by this descriptor.
     */
    public java.lang.Class getJavaClass(
    ) {
        return jalview.schemabinding.version2.Annotation.class;
    }

    /**
     * Method getNameSpacePrefix.
     * 
     * @return the namespace prefix to use when marshaling as XML.
     */
    public java.lang.String getNameSpacePrefix(
    ) {
        return _nsPrefix;
    }

    /**
     * Method getNameSpaceURI.
     * 
     * @return the namespace URI used when marshaling and
     * unmarshaling as XML.
     */
    public java.lang.String getNameSpaceURI(
    ) {
        return _nsURI;
    }

    /**
     * Method getValidator.
     * 
     * @return a specific validator for the class described by this
     * ClassDescriptor.
     */
    public org.exolab.castor.xml.TypeValidator getValidator(
    ) {
        return this;
    }

    /**
     * Method getXMLName.
     * 
     * @return the XML Name for the Class being described.
     */
    public java.lang.String getXMLName(
    ) {
        return _xmlName;
    }

    /**
     * Method isElementDefinition.
     * 
     * @return true if XML schema definition of this Class is that
     * of a global
     * element or element with anonymous type definition.
     */
    public boolean isElementDefinition(
    ) {
        return _elementDefinition;
    }

}