/* * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.schemabinding.version2.descriptors; //---------------------------------/ //- Imported classes and packages -/ //---------------------------------/ import jalview.schemabinding.version2.Feature; /** * Class FeatureDescriptor. * * @version $Revision$ $Date$ */ public class FeatureDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl { // --------------------------/ // - Class/Member Variables -/ // --------------------------/ /** * Field _elementDefinition. */ private boolean _elementDefinition; /** * Field _nsPrefix. */ private java.lang.String _nsPrefix; /** * Field _nsURI. */ private java.lang.String _nsURI; /** * Field _xmlName. */ private java.lang.String _xmlName; // ----------------/ // - Constructors -/ // ----------------/ public FeatureDescriptor() { super(); _nsURI = "www.jalview.org"; _xmlName = "feature"; _elementDefinition = false; // -- set grouping compositor setCompositorAsSequence(); org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null; org.exolab.castor.mapping.FieldHandler handler = null; org.exolab.castor.xml.FieldValidator fieldValidator = null; // -- initialize attribute descriptors // -- _begin desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.Integer.TYPE, "_begin", "begin", org.exolab.castor.xml.NodeType.Attribute); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { Feature target = (Feature) object; if (!target.hasBegin()) { return null; } return new java.lang.Integer(target.getBegin()); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Feature target = (Feature) object; // ignore null values for non optional primitives if (value == null) { return; } target.setBegin(((java.lang.Integer) value).intValue()); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setRequired(true); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _begin fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(1); { // -- local scope org.exolab.castor.xml.validators.IntValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.IntValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setMinInclusive(-2147483648); typeValidator.setMaxInclusive(2147483647); } desc.setValidator(fieldValidator); // -- _end desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.Integer.TYPE, "_end", "end", org.exolab.castor.xml.NodeType.Attribute); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { Feature target = (Feature) object; if (!target.hasEnd()) { return null; } return new java.lang.Integer(target.getEnd()); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Feature target = (Feature) object; // ignore null values for non optional primitives if (value == null) { return; } target.setEnd(((java.lang.Integer) value).intValue()); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setRequired(true); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _end fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(1); { // -- local scope org.exolab.castor.xml.validators.IntValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.IntValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setMinInclusive(-2147483648); typeValidator.setMaxInclusive(2147483647); } desc.setValidator(fieldValidator); // -- _type desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_type", "type", org.exolab.castor.xml.NodeType.Attribute); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { Feature target = (Feature) object; return target.getType(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Feature target = (Feature) object; target.setType((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setRequired(true); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _type fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(1); { // -- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); // -- _description desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_description", "description", org.exolab.castor.xml.NodeType.Attribute); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { Feature target = (Feature) object; return target.getDescription(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Feature target = (Feature) object; target.setDescription((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _description fieldValidator = new org.exolab.castor.xml.FieldValidator(); { // -- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); // -- _status desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_status", "status", org.exolab.castor.xml.NodeType.Attribute); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { Feature target = (Feature) object; return target.getStatus(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Feature target = (Feature) object; target.setStatus((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _status fieldValidator = new org.exolab.castor.xml.FieldValidator(); { // -- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); // -- _featureGroup desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_featureGroup", "featureGroup", org.exolab.castor.xml.NodeType.Attribute); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { Feature target = (Feature) object; return target.getFeatureGroup(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Feature target = (Feature) object; target.setFeatureGroup((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _featureGroup fieldValidator = new org.exolab.castor.xml.FieldValidator(); { // -- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); // -- _score desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.Float.TYPE, "_score", "score", org.exolab.castor.xml.NodeType.Attribute); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { Feature target = (Feature) object; if (!target.hasScore()) { return null; } return new java.lang.Float(target.getScore()); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Feature target = (Feature) object; // if null, use delete method for optional primitives if (value == null) { target.deleteScore(); return; } target.setScore(((java.lang.Float) value).floatValue()); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setMultivalued(false); addFieldDescriptor(desc); // -- validation code for: _score fieldValidator = new org.exolab.castor.xml.FieldValidator(); { // -- local scope org.exolab.castor.xml.validators.FloatValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.FloatValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setMinInclusive((float) -3.4028235E38); typeValidator.setMaxInclusive((float) 3.4028235E38); } desc.setValidator(fieldValidator); // -- initialize element descriptors // -- _otherDataList desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( jalview.schemabinding.version2.OtherData.class, "_otherDataList", "otherData", org.exolab.castor.xml.NodeType.Element); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { Feature target = (Feature) object; return target.getOtherData(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { Feature target = (Feature) object; target.addOtherData((jalview.schemabinding.version2.OtherData) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException { try { Feature target = (Feature) object; target.removeAllOtherData(); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new jalview.schemabinding.version2.OtherData(); } }; desc.setHandler(handler); desc.setNameSpaceURI("www.jalview.org"); desc.setMultivalued(true); addFieldDescriptor(desc); // -- validation code for: _otherDataList fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(0); { // -- local scope } desc.setValidator(fieldValidator); } // -----------/ // - Methods -/ // -----------/ /** * Method getAccessMode. * * @return the access mode specified for this class. */ public org.exolab.castor.mapping.AccessMode getAccessMode() { return null; } /** * Method getIdentity. * * @return the identity field, null if this class has no identity. */ public org.exolab.castor.mapping.FieldDescriptor getIdentity() { return super.getIdentity(); } /** * Method getJavaClass. * * @return the Java class represented by this descriptor. */ public java.lang.Class getJavaClass() { return jalview.schemabinding.version2.Feature.class; } /** * Method getNameSpacePrefix. * * @return the namespace prefix to use when marshaling as XML. */ public java.lang.String getNameSpacePrefix() { return _nsPrefix; } /** * Method getNameSpaceURI. * * @return the namespace URI used when marshaling and unmarshaling as XML. */ public java.lang.String getNameSpaceURI() { return _nsURI; } /** * Method getValidator. * * @return a specific validator for the class described by this * ClassDescriptor. */ public org.exolab.castor.xml.TypeValidator getValidator() { return this; } /** * Method getXMLName. * * @return the XML Name for the Class being described. */ public java.lang.String getXMLName() { return _xmlName; } /** * Method isElementDefinition. * * @return true if XML schema definition of this Class is that of a global * element or element with anonymous type definition. */ public boolean isElementDefinition() { return _elementDefinition; } }