/* * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.schemabinding.version2.descriptors; //---------------------------------/ //- Imported classes and packages -/ //---------------------------------/ import jalview.schemabinding.version2.VAMSAS; /** * Class VAMSASDescriptor. * * @version $Revision$ $Date$ */ public class VAMSASDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl { // --------------------------/ // - Class/Member Variables -/ // --------------------------/ /** * Field _elementDefinition. */ private boolean _elementDefinition; /** * Field _nsPrefix. */ private java.lang.String _nsPrefix; /** * Field _nsURI. */ private java.lang.String _nsURI; /** * Field _xmlName. */ private java.lang.String _xmlName; // ----------------/ // - Constructors -/ // ----------------/ public VAMSASDescriptor() { super(); _nsURI = "www.vamsas.ac.uk/jalview/version2"; _xmlName = "VAMSAS"; _elementDefinition = false; // -- set grouping compositor setCompositorAsSequence(); org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null; org.exolab.castor.mapping.FieldHandler handler = null; org.exolab.castor.xml.FieldValidator fieldValidator = null; // -- initialize attribute descriptors // -- initialize element descriptors // -- _treeList desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( java.lang.String.class, "_treeList", "Tree", org.exolab.castor.xml.NodeType.Element); desc.setImmutable(true); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { VAMSAS target = (VAMSAS) object; return target.getTree(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { VAMSAS target = (VAMSAS) object; target.addTree((java.lang.String) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException { try { VAMSAS target = (VAMSAS) object; target.removeAllTree(); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return null; } }; desc.setHandler(handler); desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2"); desc.setMultivalued(true); addFieldDescriptor(desc); // -- validation code for: _treeList fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(0); { // -- local scope org.exolab.castor.xml.validators.StringValidator typeValidator; typeValidator = new org.exolab.castor.xml.validators.StringValidator(); fieldValidator.setValidator(typeValidator); typeValidator.setWhiteSpace("preserve"); } desc.setValidator(fieldValidator); // -- _sequenceSetList desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl( jalview.schemabinding.version2.SequenceSet.class, "_sequenceSetList", "SequenceSet", org.exolab.castor.xml.NodeType.Element); handler = new org.exolab.castor.xml.XMLFieldHandler() { public java.lang.Object getValue(java.lang.Object object) throws IllegalStateException { VAMSAS target = (VAMSAS) object; return target.getSequenceSet(); } public void setValue(java.lang.Object object, java.lang.Object value) throws IllegalStateException, IllegalArgumentException { try { VAMSAS target = (VAMSAS) object; target.addSequenceSet((jalview.schemabinding.version2.SequenceSet) value); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException { try { VAMSAS target = (VAMSAS) object; target.removeAllSequenceSet(); } catch (java.lang.Exception ex) { throw new IllegalStateException(ex.toString()); } } public java.lang.Object newInstance(java.lang.Object parent) { return new jalview.schemabinding.version2.SequenceSet(); } }; desc.setHandler(handler); desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2"); desc.setMultivalued(true); addFieldDescriptor(desc); // -- validation code for: _sequenceSetList fieldValidator = new org.exolab.castor.xml.FieldValidator(); fieldValidator.setMinOccurs(0); { // -- local scope } desc.setValidator(fieldValidator); } // -----------/ // - Methods -/ // -----------/ /** * Method getAccessMode. * * @return the access mode specified for this class. */ public org.exolab.castor.mapping.AccessMode getAccessMode() { return null; } /** * Method getIdentity. * * @return the identity field, null if this class has no identity. */ public org.exolab.castor.mapping.FieldDescriptor getIdentity() { return super.getIdentity(); } /** * Method getJavaClass. * * @return the Java class represented by this descriptor. */ public java.lang.Class getJavaClass() { return jalview.schemabinding.version2.VAMSAS.class; } /** * Method getNameSpacePrefix. * * @return the namespace prefix to use when marshaling as XML. */ public java.lang.String getNameSpacePrefix() { return _nsPrefix; } /** * Method getNameSpaceURI. * * @return the namespace URI used when marshaling and unmarshaling as XML. */ public java.lang.String getNameSpaceURI() { return _nsURI; } /** * Method getValidator. * * @return a specific validator for the class described by this * ClassDescriptor. */ public org.exolab.castor.xml.TypeValidator getValidator() { return this; } /** * Method getXMLName. * * @return the XML Name for the Class being described. */ public java.lang.String getXMLName() { return _xmlName; } /** * Method isElementDefinition. * * @return true if XML schema definition of this Class is that of a global * element or element with anonymous type definition. */ public boolean isElementDefinition() { return _elementDefinition; } }