/* * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1) * Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.ws.dbsources; import java.io.BufferedReader; import java.io.File; import java.io.FileReader; import jalview.ws.seqfetcher.DbSourceProxyImpl; public abstract class EbiFileRetrievedProxy extends DbSourceProxyImpl { /** * temp path to retrieved file */ protected String file = null; public StringBuffer getRawRecords() { if (file == null) return null; StringBuffer bf = null; try { File f = new File(file); if (f.exists()) { bf = new StringBuffer(); BufferedReader breader = new BufferedReader(new FileReader(f)); String line = null; while (breader.ready() && (line = breader.readLine()) != null) { bf.append(line); } breader.close(); } } catch (Exception e) { System.err.println("Warning: problems reading temp file " + file); return null; } return bf; } }