/* * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9) * Copyright (C) 2015 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.ws.dbsources; import jalview.ws.seqfetcher.DbSourceProxy; /** * flyweight class specifying retrieval of Seed alignments from PFAM * * @author JimP * */ public class PfamSeed extends Pfam implements DbSourceProxy { public PfamSeed() { super(); } /* * (non-Javadoc) * * @see jalview.ws.dbsources.Pfam#getPFAMURL() */ protected String getXFAMURL() { return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&format=stockholm&order=t&case=l&gaps=default&entry="; } /* * (non-Javadoc) * * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() */ public String getDbName() { return "PFAM (Seed)"; } public String getDbSource() { return jalview.datamodel.DBRefSource.PFAM; // archetype source } public String getTestQuery() { return "PF03760"; } @Override public int getTier() { return 0; } }