/* * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License along with Jalview. If not, see . */ package jalview.ws.dbsources; import jalview.ws.seqfetcher.DbSourceProxy; /** * Flyweight class specifying retrieval of Full family alignments from RFAM * * @author Lauren Michelle Lui * */ public class RfamFull extends Rfam implements DbSourceProxy { public RfamFull() { super(); } /* * (non-Javadoc) * * @see jalview.ws.dbsources.Rfam#getXFAMURL() */ protected String getXFAMURL() { return "http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=full&nseLabels=0&format=stockholm&acc="; } /* * (non-Javadoc) * * @see jalview.ws.seqfetcher.DbSourceProxy#getDbName() */ public String getDbName() { return "RFAM (Full)"; } public String getDbSource() { return getDbName(); // so we have unique DbSource string. } public String getTestQuery() { // Can be retrieved from http://rfam.janelia.org/cgi-bin/getdesc?acc=RF00014 // or // http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=full&nseLabels=0&format=stockholm&acc=RF00014 return "RF00014"; } public String getDbVersion() { return null; } }