/* * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9) * Copyright (C) 2015 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.ws.jws2.jabaws2; import jalview.ws.jws2.AAConClient; import jalview.ws.jws2.JPred301Client; import jalview.ws.jws2.RNAalifoldClient; import jalview.ws.uimodel.AlignAnalysisUIText; import java.util.HashMap; import java.util.HashSet; import compbio.data.msa.JABAService; public class Jws2InstanceFactory { private static HashMap aaConGUI; private static HashSet ignoreGUI; private static String category_rewrite(String cat_name) { return (cat_name != null && cat_name.equals("Prediction")) ? "Secondary Structure Prediction" : cat_name; } private static void init() { if (aaConGUI == null) { aaConGUI = new HashMap(); aaConGUI.put(compbio.ws.client.Services.AAConWS.toString(), AAConClient.getAlignAnalysisUITest()); aaConGUI.put(compbio.ws.client.Services.RNAalifoldWS.toString(), RNAalifoldClient.getAlignAnalysisUITest()); // disable the JPred301 client in jalview ... ignoreGUI = new HashSet(); ignoreGUI.add(compbio.ws.client.Services.JpredWS.toString()); aaConGUI.put(compbio.ws.client.Services.JpredWS.toString(), JPred301Client.getAlignAnalysisUITest()); } } /** * exclusion list to avoid creating GUI elements for services we don't fully * support * * @param serviceType * @return */ public static boolean ignoreService(String serviceType) { init(); return (ignoreGUI.contains(serviceType.toString())); } /** * construct a service instance and configure it with any additional * properties needed so Jalview can access it correctly * * @param jwsservers * @param serviceType * @param name * @param description * @param service * @return */ public static Jws2Instance newJws2Instance(String jwsservers, String serviceType, String name, String description, JABAService service) { init(); Jws2Instance svc = new Jws2Instance(jwsservers, serviceType, category_rewrite(name), description, service); svc.aaui = aaConGUI.get(serviceType.toString()); return svc; } }