/* * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.ws.rest.params; import jalview.util.MessageManager; import jalview.ws.params.OptionI; import jalview.ws.rest.InputType; import jalview.ws.rest.RestJob; import java.io.UnsupportedEncodingException; import java.util.ArrayList; import java.util.List; import org.apache.http.entity.mime.content.ContentBody; /** * format a tree for input to a rest service * * @author JimP * */ public class Tree extends InputType { public Tree() { super(new Class[] { jalview.analysis.NJTree.class }); } // TODO specify modifiers for tree output format @Override public ContentBody formatForInput(RestJob rj) throws UnsupportedEncodingException { // TODO: implement tree inputType /* * rj.getTreeForInput(token); return new StringBody(new ) */ throw new Error(MessageManager.getString("error.tree_inputtype_not_yet_implemented")); // return null; } public String getURLtokenPrefix() { return "NEWICK"; } @Override public List getURLEncodedParameter() { ArrayList prms = new ArrayList(); super.addBaseParams(prms); return prms; } @Override public boolean configureProperty(String tok, String val, StringBuffer warnings) { return true; } @Override public List getOptions() { return getBaseOptions(); } }