/*
 * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
 * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
 * 
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
 */
package jalview.ws.seqfetcher;

import jalview.datamodel.AlignmentI;

import java.util.Hashtable;

import com.stevesoft.pat.Regex;

/**
 * generic Reference Retrieval interface for a particular database
 * source/version as cited in DBRefEntry. TODO: add/define property to describe
 * max number of queries that this source can cope with at once. TODO:
 * add/define mechanism for retrieval of Trees and distance matrices from a
 * database (unify with io)
 * 
 * @author JimP
 * 
 */
public interface DbSourceProxy
{
  /**
   * 
   * @return source string constant used for this DB source
   */
  public String getDbSource();

  /**
   * Short meaningful name for this data source for display in menus or
   * selection boxes.
   * 
   * @return String
   */
  public String getDbName();

  /**
   * 
   * @return version string for this database.
   */
  public String getDbVersion();

  /**
   * Separator between individual accession queries for a database that allows
   * multiple IDs to be fetched in a single query. Null implies that only a
   * single ID can be fetched at a time.
   * 
   * @return string for separating concatenated queries (as individually
   *         validated by the accession validator)
   */
  public String getAccessionSeparator();

  /**
   * Regular expression for checking form of query string understood by this
   * source.
   * 
   * @return null or a validation regex
   */
  public Regex getAccessionValidator();

  /**
   * DbSource properties hash - define the capabilities of this source Property
   * hash methods defined in DbSourceProxyImpl. See constants in
   * jalview.datamodel.DBRefSource for definition of properties.
   * 
   * @return
   */
  public Hashtable getDbSourceProperties();

  /**
   * 
   * @return a test/example query that can be used to validate retrieval and
   *         parsing mechanisms
   */
  public String getTestQuery();

  /**
   * optionally implemented
   * 
   * @param accession
   * @return
   */
  public boolean isValidReference(String accession);

  /**
   * make one or more queries to the database and attempt to parse the response
   * into an alignment
   * 
   * @param queries
   * @return null if queries were successful but result was not parsable
   * @throws Exception
   *                 TODO
   */
  public AlignmentI getSequenceRecords(String queries) throws Exception;

  /**
   * 
   * @return true if a query is currently being made
   */
  public boolean queryInProgress();

  /**
   * get the raw reponse from the last set of queries
   * 
   * @return one or more string buffers for each individual query
   */
  public StringBuffer getRawRecords();
}