/*
 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
 * Copyright (C) 2015 The Jalview Authors
 * 
 * This file is part of Jalview.
 * 
 * Jalview is free software: you can redistribute it and/or
 * modify it under the terms of the GNU General Public License 
 * as published by the Free Software Foundation, either version 3
 * of the License, or (at your option) any later version.
 *  
 * Jalview is distributed in the hope that it will be useful, but 
 * WITHOUT ANY WARRANTY; without even the implied warranty 
 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
 * PURPOSE.  See the GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License
 * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
 * The Jalview Authors are detailed in the 'AUTHORS' file.
 */
package jalview.analysis;

import static org.testng.AssertJUnit.assertEquals;
import static org.testng.AssertJUnit.assertSame;

import jalview.datamodel.DBRefEntry;

import org.testng.annotations.Test;

public class CrossRefTest
{
  @Test(groups = { "Functional" })
  public void testFindXDbRefs()
  {
    DBRefEntry ref1 = new DBRefEntry("UNIPROT", "1", "A123");
    DBRefEntry ref2 = new DBRefEntry("UNIPROTKB/TREMBL", "1", "A123");
    DBRefEntry ref3 = new DBRefEntry("pdb", "1", "A123");
    DBRefEntry ref4 = new DBRefEntry("EMBLCDSPROTEIN", "1", "A123");
    DBRefEntry ref5 = new DBRefEntry("embl", "1", "A123");
    DBRefEntry ref6 = new DBRefEntry("emblCDS", "1", "A123");
    DBRefEntry ref7 = new DBRefEntry("GeneDB", "1", "A123");
    DBRefEntry ref8 = new DBRefEntry("PFAM", "1", "A123");
    DBRefEntry[] refs = new DBRefEntry[] { ref1, ref2, ref3, ref4, ref5,
        ref6, ref7, ref8 };

    /*
     * Just the DNA refs:
     */
    DBRefEntry[] found = CrossRef.findXDbRefs(false, refs);
    assertEquals(3, found.length);
    assertSame(ref5, found[0]);
    assertSame(ref6, found[1]);
    assertSame(ref7, found[2]);

    /*
     * Just the protein refs:
     */
    found = CrossRef.findXDbRefs(true, refs);
    assertEquals(4, found.length);
    assertSame(ref1, found[0]);
    assertSame(ref2, found[1]);
    assertSame(ref3, found[2]);
    assertSame(ref4, found[3]);
  }

}