/*
 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
 * Copyright (C) $$Year-Rel$$ The Jalview Authors
 * 
 * This file is part of Jalview.
 * 
 * Jalview is free software: you can redistribute it and/or
 * modify it under the terms of the GNU General Public License 
 * as published by the Free Software Foundation, either version 3
 * of the License, or (at your option) any later version.
 *  
 * Jalview is distributed in the hope that it will be useful, but 
 * WITHOUT ANY WARRANTY; without even the implied warranty 
 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
 * PURPOSE.  See the GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License
 * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
 * The Jalview Authors are detailed in the 'AUTHORS' file.
 */
package jalview.datamodel;

import static org.testng.Assert.assertEquals;

import org.testng.annotations.Test;

public class AlignmentViewTest
{
  @Test(groups = { "Functional" })
  public void testGetVisibleAlignmentGapChar()
  {
    SeqCigar ss = new SeqCigar(new Sequence("One", "A..CDE"));
    CigarArray ca = new CigarArray(new CigarSimple[] { ss });
    AlignmentView av = new AlignmentView(ca);
    String dots = av.getSequenceStrings('.')[0];
    assertEquals(dots, "A..CDE");
    String dollars = av.getSequenceStrings('$')[0];
    assertEquals(dollars, "A$$CDE");
    assertEquals(av.getVisibleAlignment('$').getSequenceAt(0)
            .getSequenceAsString(), "A$$CDE");
  }
}