/* * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.gui; import static org.testng.AssertJUnit.assertEquals; import jalview.datamodel.Alignment; import jalview.datamodel.AlignmentI; import jalview.datamodel.Sequence; import jalview.datamodel.SequenceI; import jalview.schemes.ZappoColourScheme; import java.awt.Color; import org.testng.annotations.Test; public class SequenceRendererTest { @Test(groups = { "Functional" }) public void testGetResidueBoxColour_zappo() { SequenceI seq = new Sequence("name", "MATVLGSPRAPAFF"); // FER1_MAIZE... AlignmentI al = new Alignment(new SequenceI[] { seq }); final AlignViewport av = new AlignViewport(al); SequenceRenderer sr = new SequenceRenderer(av); av.setGlobalColourScheme(new ZappoColourScheme()); // @see ResidueProperties.zappo assertEquals(Color.pink, sr.getResidueColour(seq, 0, null)); // M assertEquals(Color.green, sr.getResidueColour(seq, 2, null)); // T assertEquals(Color.magenta, sr.getResidueColour(seq, 5, null)); // G assertEquals(Color.orange, sr.getResidueColour(seq, 12, null)); // F } // TODO more tests for getResidueBoxColour covering groups, feature rendering, // gaps, overview... }