ID J03321; SV 1; circular; genomic DNA; STD; PRO; 7502 BP. XX AC J03321; XX DT 27-JUL-1990 (Rel. 24, Created) DT 10-APR-2020 (Rel. 144, Last updated, Version 9) XX DE Chlamydia trachomatis plasmid pCHL1, complete sequence. XX KW . XX OS Chlamydia trachomatis OC Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; OC Chlamydia/Chlamydophila group; Chlamydia. OG Plasmid pCHL1 XX RN [1] RP 1-7502 RX DOI; 10.1016/0147-619X(90)90034-A. RX PUBMED; 2194229. RA Comanducci M., Ricci S., Cevenini R., Ratti G.; RT "Diversity of the Chlamydia trachomatis common plasmid in biovars with RT different pathogenicity"; RL Plasmid 23(2):149-154(1990). XX RN [2] RP 1-7502 RA Comanducci M., Ricci S., Cevenini R., Ratti G.; RT ; RL Submitted (23-JUN-2010) to the INSDC. RL Sclavo Research Centre, Siena, Italy XX DR MD5; d4c4942a634e3df4995fd5ac75c26a61. DR BioSample; SAMN14225621. DR EuropePMC; PMC4450983; 26031715. DR EuropePMC; PMC87941; 11283058. XX CC Draft entry and computer-readable sequence kindly submitted by CC G.Ratti, 28-MAR-1990. XX FH Key Location/Qualifiers FH FT source 1..7502 FT /organism="Chlamydia trachomatis" FT /plasmid="pCHL1" FT /isolate="G0/86" FT /serotype="D" FT /mol_type="genomic DNA" FT /isolation_source="trachoma" FT /db_xref="taxon:813" XX next line artificially split for test purposes! FT CDS join(7022..7502, FT 1..437) FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /note="pGP7-D" FT /db_xref="GOA:P0CE19" FT /db_xref="InterPro:IPR002104" FT /db_xref="InterPro:IPR011010" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/Swiss-Prot:P0CE19" FT /protein_id="AAA91567.1" FT /translation="MGSMAFHKSRLFLTFGDASEIWLSTLSYLTRKNYASGINFLVSLE FT ILDLSETLIKAISLDHSESLFKIKSLDVFNGKVVSEASKQARAACYISFTKFLYRLTKG FT YIKPAIPLKDFGNTTFFKIRDKIKTESISKQEWTVFFEALRIVNYRDYLIGKLIVQGIR FT KLDEILSLRTDDLFFASNQISFRIKKRQNKETKILITFPISLMEELQKYTCGRNGRVFV FT SKIGIPVTTSQVAHNFRLAEFHSAMKIKITPRVLRASALIHLKQIGLKDEEIMRISCLS FT SRQSVCSYCSGEEVIPLVQTPTIL" FT CDS complement(488..1480) FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /note="pGP8-D" FT /db_xref="GOA:P0CE20" FT /db_xref="InterPro:IPR002104" FT /db_xref="InterPro:IPR011010" FT /db_xref="InterPro:IPR013762" FT /db_xref="UniProtKB/Swiss-Prot:P0CE20" FT /protein_id="AAA91568.1" FT /translation="MGKGILSLQQEMSLEYSEKSYQEVLKIRQESYWKRMKSFSLFEVI FT MHWTASLNKHTCRSYRGSFLSLEKIGLLSLDMNLQEFSLLNHNLILDAIKKVSSAKTSW FT TEGTKQVRAASYISLTRFLNRMTQGIVAIAQPSKQENSRTFFKTREIVKTDAMNSLQTA FT SFLKELKKINARDWLIAQTMLQGGKRSSEVLSLEISQICFQQATISFSQLKNRQTEKRI FT IITYPQKFMHFLQEYIGQRRGFVFVTRSGKMVGLRQIARTFSQAGLQAAIPFKITPHVL FT RATAVTEYKRLGCSDSDIMKVTGHATAKMIFAYDKSSREDNASKKMALI" FT CDS 1579..2934 FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /note="pGP1-D" FT /db_xref="GOA:P0CE16" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR007693" FT /db_xref="InterPro:IPR007694" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR036185" FT /db_xref="UniProtKB/Swiss-Prot:P0CE16" FT /protein_id="AAA91569.1" FT /translation="MKTRSEIENRMQDIEYALLGKALIFEDSTEYILRQLANYEFKCSH FT HKNIFIVFKHLKDNGLPITVDSAWEELLRRRIKDMDKSYLGLMLHDALSNDKLRSVSHT FT VFLDDLSVCSAEENLSNFIFRSFNEYNENPLRRSPFLLLERIKGRLDSAIAKTFSIRSA FT RGRSIYDIFSQSEIGVLARIKKRRVAFSENQNSFFDGFPTGYKDIDDKGVILAKGNFVI FT IAARPSIGKTALAIDMAINLAVTQQRRVGFLSLEMSAGQIVERIIANLTGISGEKLQRG FT DLSKEELFRVEEAGETVRESHFYICSDSQYKLNLIANQIRLLRKEDRVDVIFIDYLQLI FT NSSVGENRQNEIADISRTLRGLASELNIPIVCLSQLSRKVEDRANKVPMLSDLRDSGQI FT EQDADVILFINRKESSSNCEITVGKNRHGSVFSSVLHFDPKISKFSAIKKVW" FT CDS 2928..3992 FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /note="pGP2-D" FT /db_xref="InterPro:IPR040719" FT /db_xref="UniProtKB/Swiss-Prot:P0CE17" FT /protein_id="AAA91570.1" FT /translation="MVNYSNCHFIKSPIHLENQKFGRRPGQSIKISPKLAQNGMVEVIG FT LDFLSSHYHALAAIQRLLTATNYKGNTKGVVLSRESNSFQFEGWIPRIRFTKTEFLEAY FT GVKRYKTSRNKYEFSGKEAETALEALYHLGHQPFLIVATRTRWTNGTQIVDRYQTLSPI FT IRIYEGWEGLTDEENIDIDLTPFNSPPTRKHKGFVVEPCPILVDQIESYFVIKPANVYQ FT EIKMRFPNASKYAYTFIDWVITAAAKKRRKLTKDNSWPENLLLNVNVKSLAYILRMNRY FT ICTRNWKKIELAIDKCIEIAIQLGWLSRRKRIEFLDSSKLSKKEILYLNKERFEEITKK FT SKEQMEQLEQESIN" FT CDS 4054..4848 FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /note="pGP3-D" FT /db_xref="InterPro:IPR008444" FT /db_xref="InterPro:IPR033758" FT /db_xref="InterPro:IPR038264" FT /db_xref="PDB:6GJT" FT /db_xref="UniProtKB/Swiss-Prot:P0CE18" FT /protein_id="AAA91571.1" FT /translation="MGNSGFYLYNTENCVFADNIKVGQMTEPLKDQQIILGTTSTPVAA FT KMTASDGISLTVSNNSSTNASITIGLDAEKAYQLILEKLGDQILDGIADTIVDSTVQDI FT LDKIKTDPSLGLLKAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSMF FT LVSADIIASRMEGGVVLALVREGDSKPCAISYGYSSGIPNLCSLRTSITNTGLTPTTYS FT LRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQTNA" FT CDS 4918..5226 FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /note="pGP4-D" FT /db_xref="UniProtKB/Swiss-Prot:P0CE23" FT /protein_id="AAA91572.1" FT /translation="MQNKRKVRDDFIKIVKDVKKDFPELDLKIRVNKEKVTFLNSPLEL FT YHKSVSLILGLLQQIENSLGLFPDSPVLEKLEDNSLKLKKALIMLILSRKDMFSKAE" FT CDS 5317..6048 FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /note="pGP5-D (gtg start codon)" FT /db_xref="GOA:P10559" FT /db_xref="InterPro:IPR025669" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P10559" FT /protein_id="AAA91573.1" FT /translation="MGCNLAQFLGKKVLLADLDPQSNLSSGLGASVRSDQKGLHDIVYT FT SNDLKSIICETKKDSVDLIPASFSSEQFRELDIHRGPSNNLKLFLNEYCAPFYDICIID FT TPPSLGGLTKEAFVAGDKLIACLTPEPFSILGLQKIREFLSSVGKPEEEHILGIALSFW FT DDRNSTNQMYIDIIESIYKNKLFSTKIRRDISLSRSLLKEDSVANVYPNSRAAEDILKL FT THEIANILHIEYERDYSQRTT" FT CDS 6045..6788 FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /note="pGP6-D (gtg start codon)" FT /db_xref="InterPro:IPR005350" FT /db_xref="UniProtKB/Swiss-Prot:P10560" FT /protein_id="AAA91574.1" FT /translation="MNKLKKEADVFFKKNQTAASLDFKKTLPSIELFSATLNSEESQSL FT DRLFLSESQNYSDEEFYQEDILAVKLLTGQIKSIQKQHVLLLGEKIYNARKILSKDHFS FT STTFSSWIELVFRTKSSAYNALAYYELFINLPNQTLQKEFQSIPYKSAYILAARKGDLK FT TKVDVIGKVCGMSNSSAIRVLDQFLPSSRNKDVRETIDKSDSEKNRQLSDFLIEILRIM FT CSGVSLSSYNENLLQQLFELFKQKS" FT repeat_region 6857..6945 FT /note="four tandem 22bp repeats" XX SQ Sequence 7502 BP; 2460 A; 1285 C; 1433 G; 2324 T; 0 other; ggatccgtaa gttagacgaa attttgtctt tgcgcacaga cgatctattt tttgcatcca 60 atcagatttc ctttcgcatt aaaaaaagac agaataaaga aaccaaaatt ctaatcacat 120 ttcctatcag cttaatggaa gagttgcaaa aatacacttg tgggagaaat gggagagtat 180 ttgtttctaa aatagggatt cctgtaacaa caagtcaggt tgcgcataat tttaggcttg 240 cagagttcca tagtgctatg aaaataaaaa ttactcccag agtacttcgt gcaagcgctt 300 tgattcattt aaagcaaata ggattaaaag atgaggaaat catgcgtatt tcctgtcttt 360 catcgagaca aagtgtgtgt tcttattgtt ctggggaaga ggtaattcct ctagtacaaa 420 cacccacaat attgtgatat aattaaaatt atattcatat tctgttgcca gaaaaaacac 480 ctttaggcta tattagagcc atcttctttg aagcgttgtc ttctcgagaa gatttatcgt 540 acgcaaatat catctttgcg gttgcgtgtc ctgtgacctt cattatgtcg gagtctgagc 600 accctaggcg tttgtactcc gtcacagcgg ttgctcgaag cacgtgcggg gttattttaa 660 aagggattgc agcttgtagt cctgcttgag agaacgtgcg ggcgatttgc cttaacccca 720 ccatttttcc ggagcgagtt acgaagacaa aacctcttcg ttgaccgatg tactcttgta 780 gaaagtgcat aaacttctga ggataagtta taataatcct cttttctgtc tgacggttct 840 taagctggga gaaagaaatg gtagcttgtt ggaaacaaat ctgactaatc tccaagctta 900 agacttcaga ggagcgttta cctccttgga gcattgtctg ggcgatcaac caatcccggg 960 cattgatttt ttttagctct tttaggaagg atgctgtttg caaactgttc atcgcatccg 1020 tttttactat ttccctggtt ttaaaaaatg ttcgactatt ttcttgttta gaaggttgcg 1080 ctatagcgac tattccttga gtcatcctgt ttaggaatct tgttaaggaa atatagcttg 1140 ctgctcgaac ttgtttagta ccttcggtcc aagaagtctt ggcagaggaa acttttttaa 1200 tcgcatctag gattagatta tgatttaaaa gggaaaactc ttgcagattc atatccaagg 1260 acaatagacc aatcttttct aaagacaaaa aagatcctcg atatgatcta caagtatgtt 1320 tgttgagtga tgcggtccaa tgcataataa cttcgaataa ggagaagctt ttcatgcgtt 1380 tccaatagga ttcttggcga atttttaaaa cttcctgata agacttttca ctatattcta 1440 acgacatttc ttgctgcaaa gataaaatcc ctttacccat gaaatccctc gtgatataac 1500 ctatccgtaa aatgtcctga ttagtgaaat aatcaggttg ttaacaggat agcacgctcg 1560 gtattttttt atataaacat gaaaactcgt tccgaaatag aaaatcgcat gcaagatatc 1620 gagtatgcgt tgttaggtaa agctctgata tttgaagact ctactgagta tattctgagg 1680 cagcttgcta attatgagtt taagtgttct catcataaaa acatattcat agtatttaaa 1740 cacttaaaag acaatggatt acctataact gtagactcgg cttgggaaga gcttttgcgg 1800 cgtcgtatca aagatatgga caaatcgtat ctcgggttaa tgttgcatga tgctttatca 1860 aatgacaagc ttagatccgt ttctcatacg gttttcctcg atgatttgag cgtgtgtagc 1920 gctgaagaaa atttgagtaa tttcattttc cgctcgttta atgagtacaa tgaaaatcca 1980 ttgcgtagat ctccgtttct attgcttgag cgtataaagg gaaggcttga tagtgctata 2040 gcaaagactt tttctattcg cagcgctaga ggccggtcta tttatgatat attctcacag 2100 tcagaaattg gagtgctggc tcgtataaaa aaaagacgag tagcgttctc tgagaatcaa 2160 aattctttct ttgatggctt cccaacagga tacaaggata ttgatgataa aggagttatc 2220 ttagctaaag gtaatttcgt gattatagca gctagaccat ctatagggaa aacagcttta 2280 gctatagaca tggcgataaa tcttgcggtt actcaacagc gtagagttgg tttcctatct 2340 ctagaaatga gcgcaggtca aattgttgag cggattattg ctaatttaac aggaatatct 2400 ggtgaaaaat tacaaagagg ggatctctct aaagaagaat tattccgagt agaagaagct 2460 ggagaaacgg ttagagaatc acatttttat atctgcagtg atagtcagta taagcttaac 2520 ttaatcgcga atcagatccg gttgctgaga aaagaagatc gagtagacgt aatatttatc 2580 gattacttgc agttgatcaa ctcatcggtt ggagaaaatc gtcaaaatga aatagcagat 2640 atatctagaa ccttaagagg tttagcctca gagctaaaca ttcctatagt ttgtttatcc 2700 caactatcta gaaaagttga ggatagagca aataaagttc ccatgctttc agatttgcga 2760 gacagcggtc aaatagagca agacgcagat gtgattttgt ttatcaatag gaaggaatcg 2820 tcttctaatt gtgagataac tgttgggaaa aatagacatg gatcggtttt ctcttcggta 2880 ttacatttcg atccaaaaat tagtaaattc tccgctatta aaaaagtatg gtaaattata 2940 gtaactgcca cttcatcaaa agtcctatcc accttgaaaa tcagaagttt ggaagaagac 3000 ctggtcaatc tattaagata tctcccaaat tggctcaaaa tgggatggta gaagttatag 3060 gtcttgattt tctttcatct cattaccatg cattagcagc tatccaaaga ttactgaccg 3120 caacgaatta caaggggaac acaaaagggg ttgttttatc cagagaatca aatagttttc 3180 aatttgaagg atggatacca agaatccgtt ttacaaaaac tgaattctta gaggcttatg 3240 gagttaagcg gtataaaaca tccagaaata agtatgagtt tagtggaaaa gaagctgaaa 3300 ctgctttaga agccttatac catttaggac atcaaccgtt tttaatagtg gcaactagaa 3360 ctcgatggac taatggaaca caaatagtag accgttacca aactctttct ccgatcatta 3420 ggatttacga aggatgggaa ggtttaactg acgaagaaaa tatagatata gacttaacac 3480 cttttaattc accacctaca cggaaacata aagggttcgt tgtagagcca tgtcctatct 3540 tggtagatca aatagaatcc tactttgtaa tcaagcctgc aaatgtatac caagaaataa 3600 aaatgcgttt cccaaatgca tcaaagtatg cttacacatt tatcgactgg gtgattacag 3660 cagctgcgaa aaagagacga aaattaacta aggataattc ttggccagaa aacttgttat 3720 taaacgttaa cgttaaaagt cttgcatata ttttaaggat gaatcggtac atctgtacaa 3780 ggaactggaa aaaaatcgag ttagctatcg ataaatgtat agaaatcgcc attcagcttg 3840 gctggttatc tagaagaaaa cgcattgaat ttctggattc ttctaaactc tctaaaaaag 3900 aaattctata tctaaataaa gagcgctttg aagaaataac taagaaatct aaagaacaaa 3960 tggaacaatt agaacaagaa tctattaatt aatagcaagc ttgaaactaa aaacctaatt 4020 tatttaaagc tcaaaataaa aaagagtttt aaaatgggaa attctggttt ttatttgtat 4080 aacactgaaa actgcgtctt tgctgataat atcaaagttg ggcaaatgac agagccgctc 4140 aaggaccagc aaataatcct tgggacaaca tcaacacctg tcgcagccaa aatgacagct 4200 tctgatggaa tatctttaac agtctccaat aattcatcaa ccaatgcttc tattacaatt 4260 ggtttggatg cggaaaaagc ttaccagctt attctagaaa agttgggaga tcaaattctt 4320 gatggaattg ctgatactat tgttgatagt acagtccaag atattttaga caaaatcaaa 4380 acagaccctt ctctaggttt gttgaaagct tttaacaact ttccaatcac taataaaatt 4440 caatgcaacg ggttattcac tcccagtaac attgaaactt tattaggagg aactgaaata 4500 ggaaaattca cagtcacacc caaaagctct gggagcatgt tcttagtctc agcagatatt 4560 attgcatcaa gaatggaagg cggcgttgtt ctagctttgg tacgagaagg tgattctaag 4620 ccctgcgcga ttagttatgg atactcatca ggcattccta atttatgtag tctaagaacc 4680 agtattacta atacaggatt gactccgaca acgtattcat tacgtgtagg cggtttagaa 4740 agcggtgtgg tatgggttaa tgccctttct aatggcaatg atattttagg aataacaaat 4800 acttctaatg tatctttttt agaggtaata cctcaaacaa acgcttaaac aatttttatt 4860 ggatttttct tataggtttt atatttagag aaaacagttc gaattacggg gtttgttatg 4920 caaaataaaa gaaaagtgag ggacgatttt attaaaattg ttaaagatgt gaaaaaagat 4980 ttccccgaat tagacctaaa aatacgagta aacaaggaaa aagtaacttt cttaaattct 5040 cccttagaac tctaccataa aagtgtctca ctaattctag gactgcttca acaaatagaa 5100 aactctttag gattattccc agactctcct gttcttgaaa aattagagga taacagttta 5160 aagctaaaaa aggctttgat tatgcttatc ttgtctagaa aagacatgtt ttccaaggct 5220 gaatagacaa cttactctaa cgttggagtt gatttgcaca ccttagtttt ttgctctttt 5280 aagggaggaa ctggaaaaac aacactttct ctaaacgtgg gatgcaactt ggcccaattt 5340 ttagggaaaa aagtgttact tgctgaccta gacccgcaat ccaatttatc ttctggattg 5400 ggggctagtg tcagaagtga ccaaaaaggc ttgcacgaca tagtatacac atcaaacgat 5460 ttaaaatcaa tcatttgcga aacaaaaaaa gatagtgtgg acctaattcc tgcatcattt 5520 tcatccgaac agtttagaga attggatatt catagaggac ctagtaacaa cttaaagtta 5580 tttctgaatg agtactgcgc tcctttttat gacatctgca taatagacac tccacctagc 5640 ctaggagggt taacgaaaga agcttttgtt gcaggagaca aattaattgc ttgtttaact 5700 ccagaacctt tttctattct agggttacaa aagatacgtg aattcttaag ttcggtcgga 5760 aaacctgaag aagaacacat tcttggaata gctttgtctt tttgggatga tcgtaactcg 5820 actaaccaaa tgtatataga cattatcgag tctatttaca aaaacaagct tttttcaaca 5880 aaaattcgtc gagatatttc tctcagccgt tctcttctta aagaagattc tgtagctaat 5940 gtctatccaa attctagggc cgcagaagat attctgaagt taacgcatga aatagcaaat 6000 attttgcata tcgaatatga acgagattac tctcagagga caacgtgaac aaactaaaaa 6060 aagaagcgga tgtctttttt aaaaaaaatc aaactgccgc ttctctagat tttaagaaga 6120 cgcttccctc cattgaacta ttctcagcaa ctttgaattc tgaggaaagt cagagtttgg 6180 atcgattatt tttatcagag tcccaaaact attcggatga agaattttat caagaagaca 6240 tcctagcggt aaaactgctt actggtcaga taaaatccat acagaagcaa cacgtacttc 6300 ttttaggaga aaaaatctat aatgctagaa aaatcctgag taaggatcac ttctcctcaa 6360 caactttttc atcttggata gagttagttt ttagaactaa gtcttctgct tacaatgctc 6420 ttgcatatta cgagcttttt ataaacctcc ccaaccaaac tctacaaaaa gagtttcaat 6480 cgatccccta taaatccgca tatattttgg ccgctagaaa aggcgattta aaaaccaagg 6540 tcgatgtgat agggaaagta tgtggaatgt cgaactcatc ggcgataagg gtgttggatc 6600 aatttcttcc ttcatctaga aacaaagacg ttagagaaac gatagataag tctgattcag 6660 agaagaatcg ccaattatct gatttcttaa tagagatact tcgcatcatg tgttccggag 6720 tttctttgtc ctcctataac gaaaatcttc tacaacagct ttttgaactt tttaagcaaa 6780 agagctgatc ctccgtcagc tcatatatat atatctatta tatatatata tttagggatt 6840 tgatttcacg agagagattt gcaactcttg gtggtagact ttgcaactct tggtggtaga 6900 ctttgcaact cttggtggta gactttgcaa ctcttggtgg tagacttggt cataatggac 6960 ttttgttaaa aaatttatta aaatcttaga gctccgattt tgaatagctt tggttaagaa 7020 aatgggctcg atggctttcc ataaaagtag attgttttta acttttgggg acgcgtcgga 7080 aatttggtta tctactttat cttatctaac tagaaaaaat tatgcgtctg ggattaactt 7140 tcttgtttct ttagagattc tggatttatc ggaaaccttg ataaaggcta tttctcttga 7200 ccacagcgaa tctttgttta aaatcaagtc tctagatgtt tttaatggaa aagttgtttc 7260 agaggcatct aaacaggcta gagcggcatg ctacatatct ttcacaaagt ttttgtatag 7320 attgaccaag ggatatatta aacccgctat tccattgaaa gattttggaa acactacatt 7380 ttttaaaatc cgagacaaaa tcaaaacaga atcgatttct aagcaggaat ggacagtttt 7440 ttttgaagcg ctccggatag tgaattatag agactattta atcggtaaat tgattgtaca 7500 ag 7502 //