X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=JalviewX.jpx;h=cb2e19b44d791c9e91fa9f6648b34262e6415f4a;hp=4179212b136de7278e98b79a36d83e2ae4a0a103;hb=1778cdd563831459f049be5864f04581c2f32187;hpb=1ecf6419aba86993b3c223bf5ec0fa79427baf85

diff --git a/JalviewX.jpx b/JalviewX.jpx
index 4179212..cb2e19b 100755
--- a/JalviewX.jpx
+++ b/JalviewX.jpx
@@ -1,59 +1,47 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--JBuilder XML Project-->
-<project>
-  <property category="debug.0" name="SmartStepRedefineClasses" value="0"/>
-  <property category="debug.0" name="SmartStepSkipStaticInitializers" value="0"/>
-  <property category="debug.0" name="SmartStepSkipSynthetics" value="0"/>
-  <property category="javaFormatting" name="EventStyle" value="0"/>
-  <property category="javaFormatting" name="classBraceNextLine" value="1"/>
-  <property category="javaFormatting" name="methodBraceNextLine" value="1"/>
-  <property category="javaFormatting" name="otherBraceNextLine" value="1"/>
-  <property category="javaFormatting" name="throwsOnNewLine" value="1"/>
-  <property category="javadoc" name="custom.tags.1" value="todo;a;To Do:"/>
-  <property category="optimize.0" name="OptimizableType" value="com.borland.jbuilder.optimize.IntroOptimizeitProfiler"/>
-  <property category="personality" name="personality" value=""/>
-  <property category="runtime" name="DefaultConfiguration" value="-1"/>
-  <property category="runtime.0" name="BuildTargetOnRun" value="com.borland.jbuilder.build.ProjectBuilder$ProjectBuildAction;make"/>
-  <property category="runtime.0" name="ConfigurationName" value="From the top"/>
-  <property category="runtime.0" name="ExclusionFilter" value="3"/>
-  <property category="runtime.0" name="RunnableType" value="com.borland.jbuilder.runtime.ApplicationRunner"/>
-  <property category="runtime.0" name="application.class" value="jalview.bin.Jalview"/>
-  <property category="runtime.0" name="application.parameters" value="C:\JalviewX\fasta"/>
-  <property category="serverservices" name="single.server.name" value="Tomcat 4.0"/>
-  <property category="sys" name="AuthorLabel" value="@author"/>
-  <property category="sys" name="BackupPath" value="bak"/>
-  <property category="sys" name="CheckStable" value="1"/>
-  <property category="sys" name="Company" value="Dundee University"/>
-  <property category="sys" name="CompanyLabel" value="Company:"/>
-  <property category="sys" name="Copyright" value="Copyright (c) 2004"/>
-  <property category="sys" name="CopyrightLabel" value="Copyright:"/>
-  <property category="sys" name="DefaultPath" value="src"/>
-  <property category="sys" name="Description" value="Jalview Re-engineered"/>
-  <property category="sys" name="DescriptionLabel" value="Description:"/>
-  <property category="sys" name="DocPath" value="doc"/>
-  <property category="sys" name="ExcludeClassEnabled" value="0"/>
-  <property category="sys" name="IncludeTestPath" value="1"/>
-  <property category="sys" name="InstanceVisibility" value="2"/>
-  <property category="sys" name="JDK" value="java version 1.4.2_01-b06"/>
-  <property category="sys" name="JvmVersion" value="1.2"/>
-  <property category="sys" name="LastTag" value="0"/>
-  <property category="sys" name="Libraries" value=""/>
-  <property category="sys" name="MakeStable" value="0"/>
-  <property category="sys" name="OutPath" value="classes"/>
-  <property category="sys" name="SourcePath" value="src;test"/>
-  <property category="sys" name="TestPath" value="test"/>
-  <property category="sys" name="Title" value="JalviewX"/>
-  <property category="sys" name="TitleLabel" value="Title:"/>
-  <property category="sys" name="Version" value="1.0"/>
-  <property category="sys" name="VersionLabel" value="@version"/>
-  <property category="sys" name="WorkingDirectory" value="."/>
-  <property category="sys" name="uidesign.size.jalview.gimp.GCutAndPasteTransfer" value="400,436"/>
-  <property category="sys" name="uidesign.size.jalview.gimp.GUserDefinedColours" value="464,485"/>
-  <property category="sys" name="uidesign.size.jalview.gui.GAlignmentPanel" value="573,436"/>
-  <property category="sys" name="uidesign.size.jalview.gui.GColorKey" value="442,252"/>
-  <property category="sys" name="uidesign.size.jalview.gui.GColourKey" value="400,400"/>
-  <property category="sys" name="uidesign.size.jalview.gui.GCutAndPasteTransfer" value="400,300"/>
-  <property category="sys" name="uidesign.size.jalview.gui.GTreePanel" value="529,329"/>
-  <property category="sys" name="uidesign.size.jalview.gui.GUserDefinedColours" value="447,499"/>
-  <property category="sys" name="uidesign.size.jalview.gui.TreePanel" value="402,303"/>
-</project>
+<?xml version="1.0" encoding="UTF-8"?>
+<!--JBuilder XML Project-->
+<project>
+  <property category="debug.0" name="SmartStepRedefineClasses" value="0"/>
+  <property category="debug.0" name="SmartStepSkipStaticInitializers" value="0"/>
+  <property category="debug.0" name="SmartStepSkipSynthetics" value="0"/>
+  <property category="generalFormatting2" name="overrideBasicFormatting" value="1"/>
+  <property category="javaFormatting" name="EventStyle" value="0"/>
+  <property category="javaFormatting" name="classBraceNextLine" value="1"/>
+  <property category="javaFormatting" name="methodBraceNextLine" value="1"/>
+  <property category="javaFormatting" name="otherBraceNextLine" value="1"/>
+  <property category="javaFormatting" name="packagePrefixGroups" value="java;javax;BLANK_LINE;java.awt;javax.swing;BLANK_LINE;org;(*)"/>
+  <property category="javaFormatting" name="throwsOnNewLine" value="1"/>
+  <property category="optimize.0" name="OptimizableType" value="com.borland.jbuilder.optimize.IntroOptimizeitProfiler"/>
+  <property category="runtime.0" name="BuildTargetOnRun" value="com.borland.jbuilder.build.ProjectBuilder$ProjectBuildAction;make"/>
+  <property category="runtime.0" name="ConfigurationName" value="JalviewX"/>
+  <property category="runtime.0" name="RunnableType" value="com.borland.jbuilder.runtime.ApplicationRunner"/>
+  <property category="runtime.0" name="application.class" value="jalview.bin.Jalview"/>
+  <property category="serverservices" name="single.server.name" value="Tomcat 4.0"/>
+  <property category="sys" name="AuthorLabel" value="@author"/>
+  <property category="sys" name="BackupPath" value="bak"/>
+  <property category="sys" name="Company" value="Dundee University"/>
+  <property category="sys" name="CompanyLabel" value="Company:"/>
+  <property category="sys" name="Copyright" value="Copyright (c) 2004"/>
+  <property category="sys" name="CopyrightLabel" value="Copyright:"/>
+  <property category="sys" name="DefaultPath" value="src"/>
+  <property category="sys" name="Description" value=""/>
+  <property category="sys" name="DescriptionLabel" value="Description:"/>
+  <property category="sys" name="DocPath" value="doc"/>
+  <property category="sys" name="ExcludeClassEnabled" value="0"/>
+  <property category="sys" name="IncludeTestPath" value="1"/>
+  <property category="sys" name="JDK" value="java version 1.4.2_04-b05"/>
+  <property category="sys" name="JvmVersion" value="1.4"/>
+  <property category="sys" name="Libraries" value="all"/>
+  <property category="sys" name="OutPath" value="classes"/>
+  <property category="sys" name="SourcePath" value="src;test"/>
+  <property category="sys" name="SourceVersion" value="1.4"/>
+  <property category="sys" name="TestPath" value="test"/>
+  <property category="sys" name="Title" value=""/>
+  <property category="sys" name="TitleLabel" value="Title:"/>
+  <property category="sys" name="Version" value="1.0"/>
+  <property category="sys" name="VersionLabel" value="@version"/>
+  <property category="sys" name="WorkingDirectory" value="."/>
+  <property category="sys" name="uidesign.size.jalview.jbgui.GPreferences" value="453,333"/>
+  <property category="sys" name="uidesign.size.jalview.jbgui.GSequenceLink" value="400,112"/>
+  <file path="build.xml"/>
+</project>