X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=build.xml;h=5816100c3342c4b530cc67a72ab5b7573b8742ff;hp=f99025b1195bc9c598d13d4f8524cfe8dfa3bd70;hb=270f99f51c90e60f050a64f3d44ba44c7eb1436d;hpb=cacfbefae9f0543f184e34cc3691691854330995

diff --git a/build.xml b/build.xml
index f99025b..5816100 100755
--- a/build.xml
+++ b/build.xml
@@ -412,9 +412,13 @@
 				<include name="*.jar"/>
 			</fileset>
 		</delete>
-		<jar destfile="${packageDir}/${outputJar}">
+		<jar destfile="${packageDir}/${outputJar}" index="true">
 			<manifest>
 				<attribute name="Main-Class" value="jalview.bin.Jalview" />
+        <attribute name="Permissions" value="all-permissions" />
+        <!--<attribute name="Trusted-Lib" value="true" /> -->
+        <attribute name="Application-Name" value="Jalview Desktop"/>
+        <attribute name="Codebase" value="*"/>
 			</manifest>
 			<fileset dir="${outputDir}/">
 				<exclude name="cache*/**" />
@@ -460,9 +464,13 @@
 	<target name="packageApplet" depends="compileApplet, buildPropertiesFile">
 		<copy file="${resourceDir}/images/idwidth.gif" toFile="${outputDir}/images/idwidth.gif" />
 		<copy file="${resourceDir}/images/link.gif" toFile="${outputDir}/images/link.gif" />
-		<jar destfile="in.jar">
+		<jar destfile="in.jar" index="true">
 			<manifest>
 				<attribute name="Main-Class" value="jalview.bin.JalviewLite" />
+			  	<attribute name="Permissions" value="sandbox" /> 
+        <!--<attribute name="Trusted-Lib" value="true" /> -->
+				<attribute name="Application-Name" value="JalviewLite Applet"/>
+				<attribute name="Codebase" value="www.jalview.org"/>
 			</manifest>
 			<fileset dir="${outputDir}">
 				<include name="com/**" />
@@ -585,7 +593,14 @@
 	  	      <include name="**/*"/>
 	  	        </fileset>
 	  </copy>
-	  		
+	    <jar update="true" index="true" jarfile="${packageDir}/examples/${jalviewLiteJar}"/>
+	    <jar update="true" index="true" jarfile="${packageDir}/examples/$(jmolJar}"/>
+    <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false">
+
+      <fileset dir="${packageDir}/examples">
+        <include name="*.jar" />
+      </fileset>
+    </signjar>
 	</target>
 	<target name="sourcedoc" description="Create jalview source documentation pages" depends="init">
 	 <javadoc destdir="${javadocDir}">