X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=eb4a68fff41c8d040fa9a83fdf9e5bfb981a78d6;hp=9aec5fa5b87844cec5564a2c40052fc05c9d226b;hb=376327b9f7ecbe5f33164ecfb43c53541272dc97;hpb=e94c33abc7983e947f64803ab294282a236bf671

diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 9aec5fa..eb4a68f 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -1,3 +1,4 @@
+
 <html>
 <!--
  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
@@ -51,10 +52,124 @@ li:before {
   </p>
   <table border="1">
     <tr>
-      <th nowrap><em>Release</em></th>
+      <th nowrap><a id="Jalview.$$Version-Rel$$"><em>Release</em></th>
       <th><em>New Features</em></th>
       <th><em>Issues Resolved</em></th>
     </tr>
+      <tr>
+        <td width="60" align="center" nowrap><strong><a
+            id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.7">.7</a><br />
+            <em>18/01/2022</em></strong>
+        </td>
+        <td>
+        </td>
+      <td align="left" valign="top">
+        <ul>
+          <li>
+            <!-- JAL-3703, JAL-3935 -->Files open in Jalview cannot be
+            updated by Jalview or other applications (Windows, other non
+            Unix/BSD OSs)
+          </li>
+        </ul> <em>Security</em>
+        <ul>
+          <li>
+            <!-- JAL-3937 -->Enable AIA download of HTTPS intermediate
+            certificates.
+          </li>
+        </ul>
+      </td>
+    </tr>
+      <tr>
+      <td width="60" align="center" nowrap><strong><a
+          id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.6">.6</a><br />
+          <em>6/01/2022</em></strong></td>
+
+      <td align="left" valign="top"><em>Security</em>
+        <ul>
+          <li>
+            <!-- JAL-3934 -->Version bump library dependency: Log4j 2.16.0 to 2.17.0.
+            </li>
+        </ul></td>
+      <td>
+      </td>
+    </tr>
+    <tr>
+      <td width="60" align="center" nowrap><strong><a
+          id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.5">.5</a><br />
+          <em>20/12/2021</em></strong></td>
+
+      <td align="left" valign="top"><em>Security</em>
+        <ul>
+          <li>
+            <!-- JAL-3933 -->Update library dependency: Log4j 2.16.0
+            (was log4j 1.2.x).
+        </ul> <em>Development</em>
+        <ul>
+          <li>Updated building instructions</li>
+        </ul></td>
+      <td>
+        <ul>
+          <li>
+            <!-- JAL-3840 -->Occupancy calculation is incorrect for
+            alignment columns with over -1+2^32 gaps (breaking filtering
+            and display)
+          </li>
+          <li>
+            <!-- JAL-3833 -->Caps on Hi-DPI scaling to prevent crazy
+            scale factors being set with buggy window-managers (linux
+            only)
+          </li>
+        </ul> <em>Development</em>
+        <ul>
+          <li>Fixed non-fatal gradle errors during build</li>
+        </ul>
+      </td>
+    </tr>
+    <tr>
+      <td width="60" align="center" nowrap><strong><a
+          id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.4">.4</a><br />
+          <em>09/03/2021</em></strong></td>
+      <td align="left" valign="top"><em>Improved control of
+          Jalview's use of network services via jalview_properties</em>
+        <ul>
+          <li>
+            <!-- JAL-3814 -->New .jalview_properties token controlling
+            launch of the news browser (like -nonews argument)
+          </li>
+          <li>
+            <!-- JAL-3813 -->New .jalview_properties token controlling
+            download of linkout URLs from
+            www.jalview.org/services/identifiers
+          </li>
+          <li>
+            <!-- JAL-3812 -->New .jalview_properties token controlling
+            download of BIOJSHTML templates
+          </li>
+          <li>
+            <!-- JAL-3811 -->New 'Discover Web Services' option to
+            trigger a one off JABAWS discovery if autodiscovery was
+            disabled
+          </li>
+        </ul></td>
+      <td align="left" valign="top">
+        <ul>
+          <li>
+            <!-- JAL-3818 -->Intermittent deadlock opening structure in
+            Jmol
+          </li>
+        </ul> <em>New Known defects</em>
+        <ul>
+          <li>
+            <!-- JAL-3705 -->Protein Cross-Refs for Gene Sequence not
+            always restored from project (since 2.10.3)
+          </li>
+          <li>
+            <!-- JAL-3806 -->Selections from tree built from CDS aren't
+            propagated to Protein alignment (since 2.11.1.3)
+          </li>
+        </ul>
+      </td>
+    </tr>
     <tr>
       <td width="60" align="center" nowrap><strong><a
           id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.3">.3</a><br />
@@ -80,8 +195,8 @@ li:before {
             first reported for 2.11.1.0)
           </li>
           <li>
-            <!-- JAL-3725 -->No tooltip or popup menu for genomic features
-            outwith CDS shown overlaid on protein
+            <!-- JAL-3725 -->No tooltip or popup menu for genomic
+            features outwith CDS shown overlaid on protein
           </li>
           <li>
             <!-- JAL-3751 -->Overlapping CDS in ENA accessions are not
@@ -97,9 +212,8 @@ li:before {
             always select corresponding protein sequences
           </li>
           <li>
-            <!-- JAL-3759 -->
-            <em>Make groups from selection</em> for a column selection
-            doesn't always ignore hidden columns
+            <!-- JAL-3759 --> <em>Make groups from selection</em> for a
+            column selection doesn't always ignore hidden columns
           </li>
         </ul> <em>Installer</em>
         <ul>
