X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2FwhatsNew.html;h=2bfed88900e97c7c1c04899126e9d1bb56ae1d94;hp=d849aa21925ef290b1c7de5c335642e49dfa855d;hb=a8e52ab26dc6d12c8c18844ed29b9e604f6f4522;hpb=d08dd6439589ba0ed4b683301dffbd19d7d68c79 diff --git a/help/help/html/whatsNew.html b/help/help/html/whatsNew.html old mode 100755 new mode 100644 index d849aa2..2bfed88 --- a/help/help/html/whatsNew.html +++ b/help/help/html/whatsNew.html @@ -24,18 +24,16 @@

- Welcome to Jalview Version $$Version-Rel$$ !!
Please - take a look at the release - notes for this build. Read on for the highlights. -

- Highlights in 2.11.2 + Welcome to Jalview Version $$Version-Rel$$ !!

19 April 2022

Jalview 2.11.2.2 is the second patch release in the 2.11.2 series.

- New features for working with 3D Structure
- Jalview 2.11.2 features a number of new capabilities described - below. -

+ This release series provides support for two popular 3D + structure visualisation tools, new features for discovery of 3D + structures, improved platform integration and a new command line + tool allowing Jalview to be more easily called from scripts.

View predicted protein structures via 3D-Beacons
@@ -59,37 +57,41 @@ href="https://doi.org/10.1093/bioinformatics/btm329">doi:10.1093/bioinformatics/btm329).

The Structures Preferences tab provides new options allowing ChimeraX and - Pymol to be used for visualising external 3D structures. Jalview - 2.11.2 has been tested with Pymol 2.5.0 (community) and 2.5.2 - (incentive). For ChimeraX, we recommend using v1.3 or later.
Views + Pymol to be used for visualising external 3D structures. Views from all structure viewers are saved in Jalview Projects, allowing them to be shared with others using Jalview 2.11.2 or later, providing they have the same viewer installed and configured to be - used with Jalview. + used with Jalview.

Jalview + 2.11.2 has been tested with Pymol 2.5.0 (community) and 2.5.2 + (incentive). For ChimeraX, we recommend using v1.3 or later.

Other highlights include:

Import of annotated DNA and RNA loci via GenBank and EMBL + style flatfile
Easier configuration of Jalview's memory allocation
Import of annotated DNA and RNA loci via GenBank and EMBL - style flatfile
New command line launcher scripts (.sh, .ps1, .bat) usable on - macOS, Linux/Unix, Windows and documentation in Help +
Scripts for running + Jalview via the command line on macOS, Linux/Unix and Windows.

- - -

- For the full release notes, see the Jalview 2.11.2.0 +

+ For the full details, see the Jalview 2.11.2.1 release notes.

- Known Issues -

+ Known Issues
The following known issues will + be addressed in a minor patch release. + +

Display of RESNUM sequence features are not suppressed when + structures associated with a sequence are viewed with an external + viewer (Regression from 2.11.1 series)