X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=help%2Fhtml%2Ffeatures%2FannotationsFormat.html;h=033d133c5fee5ec95ce0b4d05e7644d696ce0f83;hp=e5d30f83fd19969d5298948856bed6684f17dd33;hb=db93a1adcbe0a4eaaf06e0a70ade0d6c5c1961c3;hpb=a90e2fe3cc3b779521a81cf8de410936f3a777c1 diff --git a/help/html/features/annotationsFormat.html b/help/html/features/annotationsFormat.html index e5d30f8..033d133 100755 --- a/help/html/features/annotationsFormat.html +++ b/help/html/features/annotationsFormat.html @@ -31,9 +31,8 @@ Alignment annotations can be imported onto an alignment since version 2.08 of Jalview, via an annotations file. It is a simple ASCII text file consisting of tab delimited records similar to the Sequence Features File, and introduced primarily for use with the - Jalview applet. + href="featuresFormat.html">Sequence Features File, and + introduced primarily for use with the Jalview applet.
@@ -55,8 +54,8 @@ alignment window.
- THE ANNOTATION FILE FORMAT
An annotation file
- consists of lines containing an instruction followed by tab
+ THE ANNOTATION FILE FORMAT
An annotation
+ file consists of lines containing an instruction followed by tab
delimited fields. Any lines starting with "#" are
considered comments, and ignored. The sections below describe the
structure of an annotation file.
@@ -83,11 +82,10 @@
At the end of this document, you can also find notes on compatibility of annotation files across different versions of - Jalview. An example annotation file is - also provided along with instructions on how to import it to - Jalview. + href="#compatibility">compatibility of annotation files + across different versions of Jalview. An example + annotation file is also provided along with instructions on how to + import it to Jalview.
@@ -110,8 +108,9 @@ followed by a description for the row, which is shown in a tooltip when the user mouses over the annotation row's label. Since Jalview 2.7, the description field may also contain HTML tags (in - the same way as a sequence feature's - label), providing the text is enclosed in an <html/> tag. + the same way as a sequence + feature's label), providing the text is enclosed in an + <html/> tag.
- SEQUENCE_GROUP
Groups
- of sequences and column ranges can be defined using a tab delimited
- statement like:
+ SEQUENCE_GROUP
+ Groups of sequences and column ranges can be defined using a tab
+ delimited statement like:
SEQUENCE_GROUP Group_Name Group_Start Group_End Sequences@@ -296,8 +296,8 @@ GRAPHLINE graph_name value label colo