X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=resources%2FGeneticCodes.dat;h=4735cf274ddbcfa986f7cb0f367dba1cea8efe82;hp=4a739b7149c8442133a143fcc0d06700b1c4c951;hb=2c1fabdc3d0b711ebcc844c846fefa61d4e58bd8;hpb=a97dbd3e6e9707de13f47c66beaa15df8ea24d0e diff --git a/resources/GeneticCodes.dat b/resources/GeneticCodes.dat index 4a739b7..4735cf2 100644 --- a/resources/GeneticCodes.dat +++ b/resources/GeneticCodes.dat @@ -1,166 +1,327 @@ -# -# Genetic code translation tables -# Standard code comes first -# Other codes only list deviations from the standard -# Columns are tab separated -# source: https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi (July 2017) -# -Ambiguity Codes -R AG -Y TC -W AT -S GC -M AC -K GT -H ATC -B GTC -V GAC -D GAT -N GATC -Table 1 Standard -AAA K -AAG K -AAC N -AAT N -CAA Q -CAG Q -CAC H -CAT H -GAA E -GAG E -GAC D -GAT D -TAC Y -TAT Y -ACA T -ACC T -ACT T -ACG T -CCA P -CCG P -CCC P -CCT P -GCA A -GCG A -GCC A -GCT A -TCA S -TCG S -TCC S -TCT S -AGC S -AGT S -AGA R -AGG R -CGA R -CGG R -CGC R -CGT R -GGA G -GGG G -GGC G -GGT G -TGA * -TAA * -TAG * -TGG W -TGC C -TGT C -ATA I -ATC I -ATT I -ATG M -CTA L -CTG L -CTC L -CTT L -TTA L -TTG L -GTA V -GTG V -GTC V -GTT V -TTC F -TTT F -Table 2 Vertebrate Mitochondrial -AGA * # R -AGG * # R -ATA M # I -TGA W # * -Table 3 Yeast Mitochondrial -ATA M # I -CTT T # L -CTC T # L -CTA T # L -CTG T # L -TGA W # * -Table 4 Mold, Protozoan, and Coelenterate Mitochondrial -TGA W # * -Table 5 Invertebrate Mitochondrial -AGA S # R -AGG S # R -ATA M # I -TGA W # * -Table 6 Ciliate, Dasycladacean and Hexamita Nuclear -TAA Q # * -TAG Q # * -Table 9 Echinoderm and Flatworm Mitochondrial -AAA N # K -AGA S # R -AGG S # R -TGA W # * -Table 10 Euplotid Nuclear -TGA C # * -Table 11 Bacterial, Archaeal and Plant Plastid -Table 12 Alternative Yeast Nuclear -CTG S # L -Table 13 Ascidian Mitochondrial -AGA G # R -AGG G # R -ATA M # I -TGA W # * -Table 14 Alternative Flatworm Mitochondrial -AAA N # K -AGA S # R -AGG S # R -TAA Y # * -TGA W # * -Table 16 Chlorophycean Mitochondrial -TAG L # * -Table 21 Trematode Mitochondrial -TGA W # * -ATA M # I -AGA S # R -AGG S # R -AAA N # K -Table 22 Scenedesmus obliquus Mitochondrial -TCA * # S -TAG L # * -Table 23 Thraustochytrium Mitochondrial -TTA * # L -Table 24 Pterobranchia Mitochondrial -AGA S # R -AGG K # R -TGA W # * -Table 25 Candidate Division SR1 and Gracilibacteria -TGA G # * -Table 26 Pachysolen tannophilus Nuclear -CTG A # L -Table 27 Karyorelict Nuclear -TAG Q # * -TAA Q # * -TGA W # or STOP # * -Table 28 Condylostoma Nuclear -TAA Q # or STOP # * -TAG Q # or STOP # * -TGA W # or STOP # * -Table 29 Mesodinium Nuclear -TAA Y # * -TAG Y # * -Table 30 Peritrich Nuclear -TAA E # * -TAG E # * -Table 31 Blastocrithidia Nuclear -TGA W # * -TAG E # or STOP # * -TAA E # or STOP # * +-- source: ftp://ftp.ncbi.nih.gov/entrez/misc/data/gc.prt (19th March 2018) +-- SGC3 name edited slightly so as to fit all on one line +--************************************************************************** +-- This is the NCBI genetic code table +-- Initial base data set from Andrzej Elzanowski while at PIR International +-- Addition of Eubacterial and Alternative Yeast by J.Ostell at NCBI +-- Base 1-3 of each codon have been added as comments to facilitate +-- readability at the suggestion of Peter Rice, EMBL +-- Later additions by Taxonomy Group staff at NCBI +-- +-- Version 4.2 +-- Added Karyorelict nuclear genetic code 27 +-- Added Condylostoma nuclear genetic code 28 +-- Added Mesodinium nuclear genetic code 29 +-- Added Peritrich nuclear genetic code 30 +-- Added Blastocrithidia nuclear genetic code 31 +-- +-- Version 4.1 +-- Added Pachysolen tannophilus nuclear genetic code 26 +-- +-- Version 4.0 +-- Updated version to reflect numerous undocumented changes: +-- Corrected start codons for genetic code 25 +-- Name of new genetic code is Candidate Division SR1 and Gracilibacteria +-- Added candidate division SR1 nuclear genetic code 25 +-- Added GTG as start codon for genetic code 24 +-- Corrected Pterobranchia Mitochondrial genetic code (24) +-- Added genetic code 24, Pterobranchia Mitochondrial +-- Genetic code 11 is now Bacterial, Archaeal and Plant Plastid +-- Fixed capitalization of mitochondrial in codes 22 and 23 +-- Added GTG, ATA, and TTG as alternative start codons to code 13 +-- +-- Version 3.9 +-- Code 14 differs from code 9 only by translating UAA to Tyr rather than +-- STOP. A recent study (Telford et al, 2000) has found no evidence that +-- the codon UAA codes for Tyr in the flatworms, but other opinions exist. +-- There are very few GenBank records that are translated with code 14, +-- but a test translation shows that retranslating these records with code +-- 9 can cause premature terminations. Therefore, GenBank will maintain +-- code 14 until further information becomes available. +-- +-- Version 3.8 +-- Added GTG start to Echinoderm mitochondrial code, code 9 +-- +-- Version 3.7 +-- Added code 23 Thraustochytrium mitochondrial code +-- formerly OGMP code 93 +-- submitted by Gertraude Berger, Ph.D. +-- +-- Version 3.6 +-- Added code 22 TAG-Leu, TCA-stop +-- found in mitochondrial DNA of Scenedesmus obliquus +-- submitted by Gertraude Berger, Ph.D. +-- Organelle Genome Megasequencing Program, Univ Montreal +-- +-- Version 3.5 +-- Added code 21, Trematode Mitochondrial +-- (as deduced from: Garey & Wolstenholme,1989; Ohama et al, 1990) +-- Added code 16, Chlorophycean Mitochondrial +-- (TAG can translated to Leucine instaed to STOP in chlorophyceans +-- and fungi) +-- +-- Version 3.4 +-- Added CTG,TTG as allowed alternate start codons in Standard code. +-- Prats et al. 1989, Hann et al. 1992 +-- +-- Version 3.3 - 10/13/95 +-- Added alternate intiation codon ATC to code 5 +-- based on complete mitochondrial genome of honeybee +-- Crozier and Crozier (1993) +-- +-- Version 3.2 - 6/24/95 +-- Code Comments +-- 10 Alternative Ciliate Macronuclear renamed to Euplotid Macro... +-- 15 Blepharisma Macro.. code added +-- 5 Invertebrate Mito.. GTG allowed as alternate initiator +-- 11 Eubacterial renamed to Bacterial as most alternate starts +-- have been found in Archea +-- +-- +-- Version 3.1 - 1995 +-- Updated as per Andrzej Elzanowski at NCBI +-- Complete documentation in NCBI toolkit documentation +-- Note: 2 genetic codes have been deleted +-- +-- Old id Use id - Notes +-- +-- id 7 id 4 - Kinetoplast code now merged in code id 4 +-- id 8 id 1 - all plant chloroplast differences due to RNA edit +-- +--************************************************************************* + +Genetic-code-table ::= { + { + name "Standard" , + name "SGC0" , + id 1 , + ncbieaa "FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "---M------**--*----M---------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Vertebrate Mitochondrial" , + name "SGC1" , + id 2 , + ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSS**VVVVAAAADDEEGGGG", + sncbieaa "----------**--------------------MMMM----------**---M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Yeast Mitochondrial" , + name "SGC2" , + id 3 , + ncbieaa "FFLLSSSSYY**CCWWTTTTPPPPHHQQRRRRIIMMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "----------**----------------------MM----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Mold / Protozoan / Coelenterate Mitochondrial; Mycoplasma; Spiroplasma" , + name "SGC3" , + id 4 , + ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "--MM------**-------M------------MMMM---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Invertebrate Mitochondrial" , + name "SGC4" , + id 5 , + ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSSSVVVVAAAADDEEGGGG", + sncbieaa "---M------**--------------------MMMM---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Ciliate Nuclear; Dasycladacean Nuclear; Hexamita Nuclear" , + name "SGC5" , + id 6 , + ncbieaa "FFLLSSSSYYQQCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "--------------*--------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Echinoderm Mitochondrial; Flatworm Mitochondrial" , + name "SGC8" , + id 9 , + ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG", + sncbieaa "----------**-----------------------M---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Euplotid Nuclear" , + name "SGC9" , + id 10 , + ncbieaa "FFLLSSSSYY**CCCWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "----------**-----------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Bacterial, Archaeal and Plant Plastid" , + id 11 , + ncbieaa "FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "---M------**--*----M------------MMMM---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Alternative Yeast Nuclear" , + id 12 , + ncbieaa "FFLLSSSSYY**CC*WLLLSPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "----------**--*----M---------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Ascidian Mitochondrial" , + id 13 , + ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSGGVVVVAAAADDEEGGGG", + sncbieaa "---M------**----------------------MM---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + }, + { + name "Alternative Flatworm Mitochondrial" , + id 14 , + ncbieaa "FFLLSSSSYYY*CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG", + sncbieaa "-----------*-----------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Blepharisma Macronuclear" , + id 15 , + ncbieaa "FFLLSSSSYY*QCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "----------*---*--------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Chlorophycean Mitochondrial" , + id 16 , + ncbieaa "FFLLSSSSYY*LCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "----------*---*--------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Trematode Mitochondrial" , + id 21 , + ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNNKSSSSVVVVAAAADDEEGGGG", + sncbieaa "----------**-----------------------M---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Scenedesmus obliquus Mitochondrial" , + id 22 , + ncbieaa "FFLLSS*SYY*LCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "------*---*---*--------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Thraustochytrium Mitochondrial" , + id 23 , + ncbieaa "FF*LSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "--*-------**--*-----------------M--M---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Pterobranchia Mitochondrial" , + id 24 , + ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSSKVVVVAAAADDEEGGGG", + sncbieaa "---M------**-------M---------------M---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Candidate Division SR1 and Gracilibacteria" , + id 25 , + ncbieaa "FFLLSSSSYY**CCGWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "---M------**-----------------------M---------------M------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Pachysolen tannophilus Nuclear" , + id 26 , + ncbieaa "FFLLSSSSYY**CC*WLLLAPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "----------**--*----M---------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Karyorelict Nuclear" , + id 27 , + ncbieaa "FFLLSSSSYYQQCCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "--------------*--------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Condylostoma Nuclear" , + id 28 , + ncbieaa "FFLLSSSSYYQQCCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "----------**--*--------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Mesodinium Nuclear" , + id 29 , + ncbieaa "FFLLSSSSYYYYCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "--------------*--------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Peritrich Nuclear" , + id 30 , + ncbieaa "FFLLSSSSYYEECC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "--------------*--------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } , + { + name "Blastocrithidia Nuclear" , + id 31 , + ncbieaa "FFLLSSSSYYEECCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG", + sncbieaa "----------**-----------------------M----------------------------" + -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG + -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG + -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG + } +}