X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;fp=resources%2Flang%2FMessages.properties;h=2d48face96b245a9a62e45db2bbbf614267a3a7d;hp=7a89b71ec6e51605371046049a89b9e63c7dc751;hb=994a386819147f73fa47f3c29ba6c438f0e4b15a;hpb=3c9b34b64cf5d2fe58383817a9ac512b1ad9c1b6

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index 7a89b71..2d48fac 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -30,6 +30,7 @@ action.minimize_associated_windows = Minimize Associated Windows
 action.close_all = Close all
 action.load_project = Load Project
 action.save_project = Save Project
+action.save_project_as = Save Project as...
 action.quit = Quit
 label.quit_jalview = Quit Jalview?
 action.expand_views = Expand Views
@@ -119,10 +120,8 @@ action.select = Select
 action.new_view = New View
 action.close = Close
 action.add = Add
-action.save_as_default = Save as default
 action.save_as = Save as...
 action.save = Save
-action.cancel_fetch = Cancel Fetch
 action.change_font = Change Font
 action.change_font_tree_panel = Change Font (Tree Panel)
 action.colour = Colour
@@ -141,7 +140,6 @@ action.fetch_db_references = Fetch DB References
 action.view_flanking_regions = Show flanking regions
 label.view_flanking_regions = Show sequence data either side of the subsequences involved in this alignment
 label.structures_manager = Structures Manager
-label.nickname = Nickname:
 label.url = URL
 label.url\: = URL:
 label.input_file_url = Enter URL or Input File
@@ -163,7 +161,6 @@ label.current_parameter_set_name = Current parameter set name:
 label.service_action = Service Action:
 label.post_url = POST URL:
 label.url_suffix = URL Suffix
-label.sequence_source = Sequence Source
 label.per_seq = per Sequence
 label.result_vertically_separable = Results are vertically separable
 label.amend = Amend
@@ -173,10 +170,9 @@ label.principal_component_analysis = Principal Component Analysis
 label.average_distance_identity = Average Distance Using % Identity
 label.neighbour_joining_identity = Neighbour Joining Using % Identity
 label.choose_calculation = Choose Calculation
-label.treecalc_title = {0} Using {1}
+label.calc_title = {0} Using {1}
 label.tree_calc_av = Average Distance
 label.tree_calc_nj = Neighbour Joining
-label.select_score_model = Select score model
 label.score_model_pid = % Identity
 label.score_model_blosum62 = BLOSUM62
 label.score_model_pam250 = PAM 250
@@ -204,6 +200,7 @@ label.colourScheme_purine/pyrimidine = Purine/Pyrimidine
 label.colourScheme_nucleotide = Nucleotide
 label.colourScheme_t-coffee_scores = T-Coffee Scores
 label.colourScheme_rna_helices = By RNA Helices
+label.colourScheme_sequence_id = Sequence ID Colour
 label.blc = BLC
 label.fasta = Fasta
 label.msf = MSF
@@ -354,7 +351,6 @@ label.status = Status
 label.channels = Channels
 label.channel_title_item_count = {0} ({1})
 label.blog_item_published_on_date = {0} {1} 
-label.select_das_service_from_table = Select a DAS service from the table to read a full description here.</font></html>
 label.session_update = Session Update
 label.new_vamsas_session = New Vamsas Session
 action.load_vamsas_session = Load Vamsas Session...
@@ -372,7 +368,6 @@ label.load_colours = Load Colours
 label.save_colours = Save Colours
 label.load_colours_tooltip = Load feature colours and filters from file
 label.save_colours_tooltip = Save feature colours and filters to file
-label.fetch_das_features = Fetch DAS Features
 label.selected_database_to_fetch_from = Selected {0} database {1} to fetch from {2} 
 label.database_param = Database: {0}
 label.example = Example
@@ -410,14 +405,11 @@ label.couldnt_find_pdb_id_in_file = Couldn't find a PDB id in the file supplied.
 label.no_pdb_id_in_file = No PDB Id in File
 label.couldnt_read_pasted_text = Couldn't read the pasted text {0}
 label.error_parsing_text = Error parsing text
-label.enter_local_das_source = Enter Nickname & URL of Local DAS Source
-label.you_can_only_edit_or_remove_local_das_sources = You can only edit or remove local DAS Sources!
-label.public_das_source = Public DAS source - not editable
 label.input_alignment_from_url = Input Alignment From URL
 label.input_alignment = Input Alignment
 label.couldnt_import_as_vamsas_session = Couldn't import {0} as a new vamsas session.
 label.vamsas_document_import_failed = Vamsas Document Import Failed
-label.couldnt_locate = Couldn't locate {0}
+label.couldnt_locate = Could not locate {0}
 label.url_not_found = URL not found
 label.new_sequence_url_link = New sequence URL link
 label.cannot_edit_annotations_in_wrapped_view = Cannot edit annotations in wrapped view
@@ -429,8 +421,6 @@ label.invalid_url = Invalid URL !
 label.error_loading_file = Error loading file
 label.problems_opening_file = Encountered problems opening {0}!!
 label.file_open_error = File open error
-label.no_das_sources_selected_warn = No das sources were selected.\nPlease select some sources and\ntry again.
-label.no_das_sources_selected_title = No DAS Sources Selected
 label.colour_scheme_exists_overwrite = Colour scheme {0} exists.\nContinue saving colour scheme as {1}?"
 label.duplicate_scheme_name = Duplicate scheme name
 label.jalview_new_questionnaire = There is a new Questionnaire available. Would you like to complete it now ?\n
@@ -503,6 +493,10 @@ label.edit_name_description = Edit Name/Description...
 label.create_sequence_feature = Create Sequence Feature...
 label.edit_sequence = Edit Sequence
 label.edit_sequences = Edit Sequences
+label.insert_gap = Insert 1 gap
+label.insert_gaps = Insert {0} gaps
+label.delete_gap = Delete 1 gap
+label.delete_gaps = Delete {0} gaps
 label.sequence_details = Sequence Details
 label.jmol_help = Jmol Help
 label.chimera_help = Chimera Help
@@ -623,7 +617,6 @@ label.visual = Visual
 label.connections = Connections
 label.output = Output
 label.editing = Editing
-label.das_settings = DAS Settings
 label.web_services = Web Services
 label.right_click_to_edit_currently_selected_parameter = Right click to edit currently selected parameter.
 label.let_jmol_manage_structure_colours = Let Jmol manage structure colours
@@ -639,10 +632,6 @@ label.delete_service_url = Delete Service URL
 label.details = Details
 label.options = Options
 label.parameters = Parameters
-label.available_das_sources = Available DAS Sources
-label.full_details = Full Details
-label.authority = Authority
-label.type = Type
 label.proxy_server = Proxy Server
 label.file_output = File Output
 label.select_input_type = Select input type
@@ -711,9 +700,6 @@ label.sort_alignment_new_tree = Sort Alignment With New Tree
 label.add_sequences = Add Sequences
 label.new_window = New Window
 label.split_window = Split Window
-label.refresh_available_sources = Refresh Available Sources
-label.use_registry = Use Registry
-label.add_local_source = Add Local Source
 label.set_as_default = Set as Default
 label.show_labels = Show labels
 action.background_colour = Background Colour...
@@ -772,7 +758,7 @@ label.run_with_preset_params = Run {0} with preset
 label.view_and_change_parameters_before_running_calculation = View and change parameters before running calculation
 label.view_documentation = View documentation
 label.select_return_type = Select return type
-label.translation_of_params = Translation of {0}
+label.translation_of_params = Translation of {0} (Table {1})
 label.features_for_params = Features for - {0}
 label.annotations_for_params = Annotations for - {0}
 label.generating_features_for_params = Generating features for - {0}
@@ -854,7 +840,6 @@ label.multiharmony = Multi-Harmony
 label.unable_start_web_service_analysis = Unable to start web service analysis
 label.job_couldnt_be_started_check_input = The Job couldn't be started. Please check your input, and the Jalview console for any warning messages.
 label.prompt_each_time = Prompt each time
-label.use_source = Use Source
 label.couldnt_save_project = Couldn't save project
 label.error_whilst_saving_current_state_to = Error whilst saving current state to {0}
 label.error_whilst_loading_project_from = Error whilst loading project from {0}
@@ -880,7 +865,6 @@ label.error_unsupported_owwner_user_colour_scheme = Unsupported owner for User C
 label.save_alignment_to_file = Save Alignment to file
 label.save_features_to_file = Save Features to File
 label.save_annotation_to_file = Save Annotation to File
-label.no_features_on_alignment = No features found on alignment
 label.save_pdb_file = Save PDB File
 label.save_text_to_file = Save Text to File
 label.save_state = Save State
@@ -1080,8 +1064,6 @@ exception.unable_to_create_internet_config = Unable to create an Internet Config
 exception.invocation_target_calling_url = InvocationTargetException while calling openURL: {0}
 exception.illegal_access_calling_url = IllegalAccessException while calling openURL: {0}
 exception.interrupted_launching_browser = InterruptedException while launching browser: {0}
-exception.das_source_doesnt_support_sequence_command = Source {0} does not support the sequence command.
-exception.invalid_das_source = Invalid das source: {0}
 exception.ebiembl_retrieval_failed_on = EBI EMBL XML retrieval failed on {0}:{1}
 exception.no_pdb_records_for_chain = No PDB Records for {0} chain {1}
 exception.unexpected_handling_rnaml_translation_for_pdb = Unexpected exception when handling RNAML translation of PDB data
@@ -1136,10 +1118,6 @@ status.parsing_results = Parsing results.
 status.processing = Processing...
 status.refreshing_web_service_menus = Refreshing Web Service Menus
 status.collecting_job_results = Collecting job results.
-status.fetching_das_sequence_features = Fetching DAS Sequence Features
-status.no_das_sources_active = No DAS Sources Active
-status.das_feature_fetching_cancelled = DAS Feature Fetching Cancelled
-status.das_feature_fetching_complete = DAS Feature Fetching Complete
 status.fetching_db_refs = Fetching db refs
 status.loading_cached_pdb_entries = Loading Cached PDB Entries
 status.searching_for_pdb_structures = Searching for PDB Structures
@@ -1162,8 +1140,6 @@ warn.urls_not_contacted = URLs that could not be contacted
 warn.urls_no_jaba = URLs without any JABA Services
 info.validate_jabaws_server = Validate JabaWS Server ?\n(Look in console output for results)
 label.test_server = Test Server?
-info.you_want_jalview_to_find_uniprot_accessions = Do you want Jalview to find\nUniprot Accession ids for given sequence names?
-label.find_uniprot_accession_ids = Find Uniprot Accession Ids
 label.new_sequence_fetcher = New Sequence Fetcher
 label.additional_sequence_fetcher = Additional Sequence Fetcher
 label.select_database_retrieval_source = Select Database Retrieval Source
@@ -1285,7 +1261,6 @@ label.SEQUENCE_ID_for_DB_ACCESSION1 = Please review your URL links in the 'Conne
 label.SEQUENCE_ID_for_DB_ACCESSION2 = URL links using '$SEQUENCE_ID$' for DB accessions now use '$DB_ACCESSION$'.
 label.do_not_display_again = Do not display this message again
 exception.url_cannot_have_duplicate_id = {0} cannot be used as a label for more than one line
-label.filter = Filter text:
 action.customfilter = Custom only
 action.showall = Show All
 label.insert = Insert:
@@ -1300,7 +1275,6 @@ label.edit_sequence_url_link = Edit sequence URL link
 warn.name_cannot_be_duplicate = User-defined URL names must be unique and cannot be MIRIAM ids
 label.output_seq_details = Output Sequence Details to list all database references
 label.urllinks = Links
-label.default_cache_size = Default Cache Size
 action.clear_cached_items = Clear Cached Items
 label.togglehidden = Show hidden regions
 label.quality_descr = Alignment Quality based on Blosum62 scores
@@ -1353,7 +1327,6 @@ label.colour_by_text = Colour by text
 label.graduated_colour = Graduated Colour
 label.by_text_of = By text of
 label.by_range_of = By range of
-label.filters_tooltip = Click to set or amend filters
 label.or = Or
 label.and = And
 label.sequence_feature_colours = Sequence Feature Colours
@@ -1364,3 +1337,60 @@ label.most_bound_molecules = Most Bound Molecules
 label.most_polymer_residues = Most Polymer Residues
 label.cached_structures = Cached Structures
 label.free_text_search = Free Text Search
+label.backupfiles_confirm_delete = Confirm delete
+label.backupfiles_confirm_delete_old_files = Delete the following older backup files? (see the Backups tab in Preferences for more options)
+label.backupfiles_confirm_save_file = Confirm save file
+label.backupfiles_confirm_save_file_backupfiles_roll_wrong = Something possibly went wrong with the backups of this file.
+label.backupfiles_confirm_save_new_saved_file_ok = The new saved file seems okay.
+label.backupfiles_confirm_save_new_saved_file_not_ok = The new saved file might not be okay.
+label.backups = Backups
+label.backup = Backup
+label.backup_files = Backup Files
+label.enable_backupfiles = Enable backup files
+label.backup_filename_strategy = Backup filename strategy
+label.append_to_filename = Append to filename (%n is replaced by the backup number)
+label.append_to_filename_tooltip = %n in the text will be replaced by the backup number. The text will appear after the filename. See the summary box above.
+label.index_digits = Number of digits to use for the backup number (%n)
+label.summary_of_backups_scheme = Summary of backup scheme
+label.increment_index = Increase appended text numbers - newest file has largest number.
+label.reverse_roll = "Roll" appended text numbers - newest backup file is always number 1.
+label.keep_files = Deleting old backup files
+label.keep_all_backup_files = Do not delete old backup files
+label.keep_only_this_number_of_backup_files = Keep only this number of most recent backup files
+label.autodelete_old_backup_files = Autodelete old backup files:
+label.always_ask = Always ask
+label.auto_delete = Automatically delete
+label.filename = filename
+label.braced_oldest = (oldest)
+label.braced_newest = (most recent)
+label.configuration = Configuration
+label.configure_feature_tooltip = Click to configure variable colour or filters
+label.schemes = Schemes
+label.customise = Customise
+label.default = Default
+label.single_file = Single backup
+label.keep_all_versions = Keep all versions
+label.rolled_backups = Rolled backup files
+label.previously_saved_scheme = Previously saved scheme
+label.no_backup_files = NO BACKUP FILES
+label.include_backup_files = Include backup files
+label.cancel_changes = Cancel changes
+label.warning_confirm_change_reverse = Warning!\nIf you change the increment/decrement of the backup filename number, without changing the suffix or number of digits,\nthis may cause loss of backup files created with the previous backup filename scheme.\nAre you sure you wish to do this?
+label.change_increment_decrement = Change increment/decrement?
+label.was_previous = was {0}
+label.newerdelete_replacement_line = Backup file\n''{0}''\t(modified {2}, size {4})\nis to be deleted and replaced by apparently older file\n''{1}''\t(modified {3}, size {5}).
+label.confirm_deletion_or_rename = Confirm deletion of ''{0}'' or rename to ''{1}''?
+label.newerdelete_line = Backup file\n''{0}''\t(modified {2}, size {4})\nis to be deleted but is newer than the oldest remaining backup file\n''{1}''\t(modified {3}, size {5}).
+label.confirm_deletion = Confirm deletion of ''{0}''?
+label.delete = Delete
+label.rename = Rename
+label.keep = Keep
+label.file_info = (modified {0}, size {1})
+label.annotation_name = Annotation Name
+label.annotation_description = Annotation Description 
+label.edit_annotation_name_description = Edit Annotation Name/Description
+label.alignment = alignment
+label.pca = PCA
+label.create_image_of = Create {0} image of {1}
+label.click_to_edit = Click to edit, right-click for menu
+label.by_annotation_tooltip = Annotation Colour is configured from the main Colour menu