X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FPdbentryItem.java;h=83bc40ab1ba3d9769ba5e62423eeac933a6b2887;hp=dc2314b0db8aa596e73100f6793118fe7eef5c0d;hb=cd07a161a10680208029f76aa46710c1032aae46;hpb=9f3f8923d63c90a045c1ecefa0197a2acf6c7167

diff --git a/src/jalview/binding/PdbentryItem.java b/src/jalview/binding/PdbentryItem.java
index dc2314b..83bc40a 100755
--- a/src/jalview/binding/PdbentryItem.java
+++ b/src/jalview/binding/PdbentryItem.java
@@ -1,21 +1,10 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- * 
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
  */
+
 package jalview.binding;
 
 /**
@@ -23,185 +12,181 @@ package jalview.binding;
  * 
  * @version $Revision$ $Date$
  */
-public class PdbentryItem implements java.io.Serializable
-{
-
-  // --------------------------/
-  // - Class/Member Variables -/
-  // --------------------------/
-
-  /**
-   * Field _propertyList.
-   */
-  private java.util.Vector _propertyList;
-
-  // ----------------/
-  // - Constructors -/
-  // ----------------/
-
-  public PdbentryItem()
-  {
-    super();
-    this._propertyList = new java.util.Vector();
-  }
-
-  // -----------/
-  // - Methods -/
-  // -----------/
-
-  /**
-   * 
-   * 
-   * @param vProperty
-   * @throws java.lang.IndexOutOfBoundsException
-   *                 if the index given is outside the bounds of the collection
-   */
-  public void addProperty(final jalview.binding.Property vProperty)
-          throws java.lang.IndexOutOfBoundsException
-  {
-    this._propertyList.addElement(vProperty);
-  }
-
-  /**
-   * 
-   * 
-   * @param index
-   * @param vProperty
-   * @throws java.lang.IndexOutOfBoundsException
-   *                 if the index given is outside the bounds of the collection
-   */
-  public void addProperty(final int index,
-          final jalview.binding.Property vProperty)
-          throws java.lang.IndexOutOfBoundsException
-  {
-    this._propertyList.add(index, vProperty);
-  }
-
-  /**
-   * Method enumerateProperty.
-   * 
-   * @return an Enumeration over all jalview.binding.Property elements
-   */
-  public java.util.Enumeration enumerateProperty()
-  {
-    return this._propertyList.elements();
-  }
-
-  /**
-   * Method getProperty.
-   * 
-   * @param index
-   * @throws java.lang.IndexOutOfBoundsException
-   *                 if the index given is outside the bounds of the collection
-   * @return the value of the jalview.binding.Property at the given index
-   */
-  public jalview.binding.Property getProperty(final int index)
-          throws java.lang.IndexOutOfBoundsException
-  {
-    // check bounds for index
-    if (index < 0 || index >= this._propertyList.size())
-    {
-      throw new IndexOutOfBoundsException("getProperty: Index value '"
-              + index + "' not in range [0.."
-              + (this._propertyList.size() - 1) + "]");
+public class PdbentryItem implements java.io.Serializable {
+
+
+      //--------------------------/
+     //- Class/Member Variables -/
+    //--------------------------/
+
+    /**
+     * Field _propertyList.
+     */
+    private java.util.Vector _propertyList;
+
+
+      //----------------/
+     //- Constructors -/
+    //----------------/
+
+    public PdbentryItem() {
+        super();
+        this._propertyList = new java.util.Vector();
+    }
+
+
+      //-----------/
+     //- Methods -/
+    //-----------/
+
+    /**
+     * 
+     * 
+     * @param vProperty
+     * @throws java.lang.IndexOutOfBoundsException if the index
+     * given is outside the bounds of the collection
+     */
+    public void addProperty(
+            final jalview.binding.Property vProperty)
+    throws java.lang.IndexOutOfBoundsException {
+        this._propertyList.addElement(vProperty);
+    }
+
+    /**
+     * 
+     * 
+     * @param index
+     * @param vProperty
+     * @throws java.lang.IndexOutOfBoundsException if the index
+     * given is outside the bounds of the collection
+     */
+    public void addProperty(
+            final int index,
+            final jalview.binding.Property vProperty)
+    throws java.lang.IndexOutOfBoundsException {
+        this._propertyList.add(index, vProperty);
+    }
+
+    /**
+     * Method enumerateProperty.
+     * 
+     * @return an Enumeration over all jalview.binding.Property
+     * elements
+     */
+    public java.util.Enumeration enumerateProperty(
+    ) {
+        return this._propertyList.elements();
+    }
+
+    /**
+     * Method getProperty.
+     * 
+     * @param index
+     * @throws java.lang.IndexOutOfBoundsException if the index
+     * given is outside the bounds of the collection
+     * @return the value of the jalview.binding.Property at the
+     * given index
+     */
+    public jalview.binding.Property getProperty(
+            final int index)
+    throws java.lang.IndexOutOfBoundsException {
+        // check bounds for index
+        if (index < 0 || index >= this._propertyList.size()) {
+            throw new IndexOutOfBoundsException("getProperty: Index value '" + index + "' not in range [0.." + (this._propertyList.size() - 1) + "]");
+        }
+        
+        return (jalview.binding.Property) _propertyList.get(index);
+    }
+
+    /**
+     * Method getProperty.Returns the contents of the collection in
+     * an Array.  <p>Note:  Just in case the collection contents
+     * are changing in another thread, we pass a 0-length Array of
+     * the correct type into the API call.  This way we <i>know</i>
+     * that the Array returned is of exactly the correct length.
+     * 
+     * @return this collection as an Array
+     */
+    public jalview.binding.Property[] getProperty(
+    ) {
+        jalview.binding.Property[] array = new jalview.binding.Property[0];
+        return (jalview.binding.Property[]) this._propertyList.toArray(array);
+    }
+
+    /**
+     * Method getPropertyCount.
+     * 
+     * @return the size of this collection
+     */
+    public int getPropertyCount(
+    ) {
+        return this._propertyList.size();
+    }
+
+    /**
+     */
+    public void removeAllProperty(
+    ) {
+        this._propertyList.clear();
+    }
+
+    /**
+     * Method removeProperty.
+     * 
+     * @param vProperty
+     * @return true if the object was removed from the collection.
+     */
+    public boolean removeProperty(
+            final jalview.binding.Property vProperty) {
+        boolean removed = _propertyList.remove(vProperty);
+        return removed;
+    }
+
+    /**
+     * Method removePropertyAt.
+     * 
+     * @param index
+     * @return the element removed from the collection
+     */
+    public jalview.binding.Property removePropertyAt(
+            final int index) {
+        java.lang.Object obj = this._propertyList.remove(index);
+        return (jalview.binding.Property) obj;
     }
 
-    return (jalview.binding.Property) _propertyList.get(index);
-  }
-
-  /**
-   * Method getProperty.Returns the contents of the collection in an Array.
-   * <p>
-   * Note: Just in case the collection contents are changing in another thread,
-   * we pass a 0-length Array of the correct type into the API call. This way we
-   * <i>know</i> that the Array returned is of exactly the correct length.
-   * 
-   * @return this collection as an Array
-   */
-  public jalview.binding.Property[] getProperty()
-  {
-    jalview.binding.Property[] array = new jalview.binding.Property[0];
-    return (jalview.binding.Property[]) this._propertyList.toArray(array);
-  }
-
-  /**
-   * Method getPropertyCount.
-   * 
-   * @return the size of this collection
-   */
-  public int getPropertyCount()
-  {
-    return this._propertyList.size();
-  }
-
-  /**
-   */
-  public void removeAllProperty()
-  {
-    this._propertyList.clear();
-  }
-
-  /**
-   * Method removeProperty.
-   * 
-   * @param vProperty
-   * @return true if the object was removed from the collection.
-   */
-  public boolean removeProperty(final jalview.binding.Property vProperty)
-  {
-    boolean removed = _propertyList.remove(vProperty);
-    return removed;
-  }
-
-  /**
-   * Method removePropertyAt.
-   * 
-   * @param index
-   * @return the element removed from the collection
-   */
-  public jalview.binding.Property removePropertyAt(final int index)
-  {
-    java.lang.Object obj = this._propertyList.remove(index);
-    return (jalview.binding.Property) obj;
-  }
-
-  /**
-   * 
-   * 
-   * @param index
-   * @param vProperty
-   * @throws java.lang.IndexOutOfBoundsException
-   *                 if the index given is outside the bounds of the collection
-   */
-  public void setProperty(final int index,
-          final jalview.binding.Property vProperty)
-          throws java.lang.IndexOutOfBoundsException
-  {
-    // check bounds for index
-    if (index < 0 || index >= this._propertyList.size())
-    {
-      throw new IndexOutOfBoundsException("setProperty: Index value '"
-              + index + "' not in range [0.."
-              + (this._propertyList.size() - 1) + "]");
+    /**
+     * 
+     * 
+     * @param index
+     * @param vProperty
+     * @throws java.lang.IndexOutOfBoundsException if the index
+     * given is outside the bounds of the collection
+     */
+    public void setProperty(
+            final int index,
+            final jalview.binding.Property vProperty)
+    throws java.lang.IndexOutOfBoundsException {
+        // check bounds for index
+        if (index < 0 || index >= this._propertyList.size()) {
+            throw new IndexOutOfBoundsException("setProperty: Index value '" + index + "' not in range [0.." + (this._propertyList.size() - 1) + "]");
+        }
+        
+        this._propertyList.set(index, vProperty);
     }
 
-    this._propertyList.set(index, vProperty);
-  }
-
-  /**
-   * 
-   * 
-   * @param vPropertyArray
-   */
-  public void setProperty(final jalview.binding.Property[] vPropertyArray)
-  {
-    // -- copy array
-    _propertyList.clear();
-
-    for (int i = 0; i < vPropertyArray.length; i++)
-    {
-      this._propertyList.add(vPropertyArray[i]);
+    /**
+     * 
+     * 
+     * @param vPropertyArray
+     */
+    public void setProperty(
+            final jalview.binding.Property[] vPropertyArray) {
+        //-- copy array
+        _propertyList.clear();
+        
+        for (int i = 0; i < vPropertyArray.length; i++) {
+                this._propertyList.add(vPropertyArray[i]);
+        }
     }
-  }
 
 }