X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fcontroller%2FAlignViewController.java;h=3c766172b9b30fc6fadb48d8e8a226a35ea764a9;hp=3be32bb1e4a3e0f767415f5b6f0a5ec36b8140d7;hb=6e3194d06f60246cd6ebd05ef34b1644c46f7159;hpb=6f9acb31a9f7c8571273a141583133358a6445ce diff --git a/src/jalview/controller/AlignViewController.java b/src/jalview/controller/AlignViewController.java index 3be32bb..3c76617 100644 --- a/src/jalview/controller/AlignViewController.java +++ b/src/jalview/controller/AlignViewController.java @@ -21,6 +21,7 @@ package jalview.controller; import jalview.analysis.AlignmentSorter; +import jalview.analysis.Grouping; import jalview.api.AlignViewControllerGuiI; import jalview.api.AlignViewControllerI; import jalview.api.AlignViewportI; @@ -86,14 +87,14 @@ public class AlignViewController implements AlignViewControllerI if (sg != null && (cs == null || cs.getSelected() == null || cs.size() == 0)) { - gps = jalview.analysis.Grouping.makeGroupsFrom( + gps = Grouping.makeGroupsFrom( viewport.getSequenceSelection(), viewport.getAlignmentView(true).getSequenceStrings( viewport.getGapCharacter()), viewport.getAlignment() .getGroups()); } else { if (cs!=null) { - gps = jalview.analysis.Grouping.makeGroupsFromCols( + gps = Grouping.makeGroupsFromCols( (sg == null) ? viewport.getAlignment().getSequencesArray() : sg.getSequences().toArray(new SequenceI[0]), cs, viewport.getAlignment().getGroups());