X-Git-Url: http://source.jalview.org/gitweb/?p=jalview.git;a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignedCodonFrame.java;h=6ccc0fc0c663b6458d88377696421e0381026fde;hp=6faf7a69179a11f7a6a83c058b93bb52dcef8f6a;hb=855af27bbb88788ac9c1ee9872a43fbb333ae380;hpb=8f8ae6f88d8b6ad812dfce35713a429b8588b1eb

diff --git a/src/jalview/datamodel/AlignedCodonFrame.java b/src/jalview/datamodel/AlignedCodonFrame.java
index 6faf7a6..6ccc0fc 100644
--- a/src/jalview/datamodel/AlignedCodonFrame.java
+++ b/src/jalview/datamodel/AlignedCodonFrame.java
@@ -171,8 +171,8 @@ public class AlignedCodonFrame
 
       if (length != -1)
       {
-        // add 1 to mapped length to allow for a mapped stop codon
-        if (length + 1 >= (mend - mstart + 1))
+        // add 3 to mapped length to allow for a mapped stop codon
+        if (length + 3 >= (mend - mstart + 1))
         {
           return true;
         }